Protein–RNA interactions for Protein: P06839

RAD3, General transcription and DNA repair factor IIH helicase subunit XPD, yeastyeast

Predictions only

Length 778 aa.

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Protein RNA Prediction (catRAPID) Interaction (RIP-Chip)
Gene UniProt Accession Gene Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score Detected Interaction
RAD3P06839 IFH1YLR223C 3258 nt1□□□□□ -2.25
RAD3P06839 tF(GAA)BtF(GAA)B 73 nt0.99□□□□□ -2.25
RAD3P06839 tF(GAA)FtF(GAA)F 73 nt0.99□□□□□ -2.25
RAD3P06839 tF(GAA)GtF(GAA)G 73 nt0.99□□□□□ -2.25
RAD3P06839 tF(GAA)H1tF(GAA)H1 73 nt0.99□□□□□ -2.25
RAD3P06839 tF(GAA)H2tF(GAA)H2 73 nt0.99□□□□□ -2.25
RAD3P06839 tF(GAA)MtF(GAA)M 73 nt0.99□□□□□ -2.25
RAD3P06839 tF(GAA)P1tF(GAA)P1 73 nt0.99□□□□□ -2.25
RAD3P06839 tF(GAA)P2tF(GAA)P2 73 nt0.99□□□□□ -2.25
RAD3P06839 YER087C-AYER087C-A 552 nt0.99□□□□□ -2.25
RAD3P06839 YLR171WYLR171W 390 nt0.99□□□□□ -2.25
RAD3P06839 YDR114CYDR114C 303 nt0.98□□□□□ -2.25
RAD3P06839 SDH2YLL041C 801 nt0.98□□□□□ -2.25
RAD3P06839 NUT2YPR168W 474 nt0.98□□□□□ -2.25
RAD3P06839 snR41snR41 95 nt0.98□□□□□ -2.25
RAD3P06839 CYC7YEL039C 342 nt0.97□□□□□ -2.25
RAD3P06839 QCR9YGR183C 201 nt0.97□□□□□ -2.25
RAD3P06839 YHR125WYHR125W 306 nt0.97□□□□□ -2.25
RAD3P06839 YLR146W-AYLR146W-A 189 nt0.96□□□□□ -2.26
RAD3P06839 YMR242W-AYMR242W-A 90 nt0.96□□□□□ -2.26
RAD3P06839 YBL071CYBL071C 309 nt0.96□□□□□ -2.26
RAD3P06839 ERP4YOR016C 624 nt0.96□□□□□ -2.26
RAD3P06839 snR54snR54 86 nt0.96□□□□□ -2.26
RAD3P06839 AI5_ALPHAQ0070 1893 nt0.96□□□□□ -2.26
RAD3P06839 MPT5YGL178W 2580 nt0.96□□□□□ -2.26
RAD3P06839 YJR003CYJR003C 1560 nt0.96□□□□□ -2.26
RAD3P06839 YLL032CYLL032C 2478 nt0.95□□□□□ -2.26
RAD3P06839 MRPL31YKL138C 396 nt0.95□□□□□ -2.26
RAD3P06839 YLR101CYLR101C 396 nt0.95□□□□□ -2.26
RAD3P06839 YBR012CYBR012C 420 nt0.95□□□□□ -2.26
RAD3P06839 SLD3YGL113W 2007 nt0.94□□□□□ -2.26
RAD3P06839 RFX1YLR176C 2436 nt0.94□□□□□ -2.26
RAD3P06839 CBS1YDL069C 690 nt0.94□□□□□ -2.26
RAD3P06839 KAP120YPL125W 3099 nt0.93□□□□□ -2.26
RAD3P06839 YER076W-AYER076W-A 348 nt0.93□□□□□ -2.26
RAD3P06839 YLR287CYLR287C 1068 nt0.93□□□□□ -2.26
RAD3P06839 YOR072W-AYOR072W-A 249 nt0.93□□□□□ -2.26
RAD3P06839 YPL182CYPL182C 384 nt0.93□□□□□ -2.26
RAD3P06839 SWI6YLR182W 2412 nt0.92□□□□□ -2.26
RAD3P06839 AIM44YPL158C 2277 nt0.92□□□□□ -2.26
RAD3P06839 YCK3YER123W 1575 nt0.91□□□□□ -2.26
RAD3P06839 YDL011CYDL011C 324 nt0.91□□□□□ -2.26
RAD3P06839 YDR269CYDR269C 324 nt0.91□□□□□ -2.26
RAD3P06839 ECL1YGR146C 636 nt0.9□□□□□ -2.27
RAD3P06839 YLR456WYLR456W 615 nt0.9□□□□□ -2.27
RAD3P06839 IRC23YOR044W 474 nt0.9□□□□□ -2.27
RAD3P06839 SCW11YGL028C 1629 nt0.89□□□□□ -2.27
RAD3P06839 SET3YKR029C 2256 nt0.89□□□□□ -2.27
RAD3P06839 TIM13YGR181W 318 nt0.89□□□□□ -2.27
RAD3P06839 YJL020W-AYJL020W-A 258 nt0.89□□□□□ -2.27
RAD3P06839 YBR221W-AYBR221W-A 105 nt0.89□□□□□ -2.27
RAD3P06839 YAR009CYAR009C 3591 nt0.89□□□□□ -2.27
RAD3P06839 YER006C-AYER006C-A 318 nt0.88□□□□□ -2.27
RAD3P06839 RPL26AYLR344W 384 nt0.88□□□□□ -2.27
RAD3P06839 MRPL50YNR022C 420 nt0.88□□□□□ -2.27
RAD3P06839 NUP157YER105C 4176 nt0.88□□□□□ -2.27
RAD3P06839 DIE2YGR227W 1578 nt0.87□□□□□ -2.27
RAD3P06839 ALY2YJL084C 3141 nt0.87□□□□□ -2.27
RAD3P06839 SAS3YBL052C 2496 nt0.87□□□□□ -2.27
RAD3P06839 YAP6YDR259C 1152 nt0.87□□□□□ -2.27
RAD3P06839 YIL059CYIL059C 366 nt0.87□□□□□ -2.27
RAD3P06839 UPS1YLR193C 528 nt0.87□□□□□ -2.27
RAD3P06839 ISF1YMR081C 1017 nt0.87□□□□□ -2.27
RAD3P06839 YBR200W-AYBR200W-A 165 nt0.87□□□□□ -2.27
RAD3P06839 SDH7YDR511W 402 nt0.86□□□□□ -2.27
RAD3P06839 YHL041WYHL041W 450 nt0.86□□□□□ -2.27
RAD3P06839 SLY1YDR189W 2001 nt0.85□□□□□ -2.27
RAD3P06839 AIM9YER080W 1884 nt0.85□□□□□ -2.27
RAD3P06839 YOR199WYOR199W 330 nt0.85□□□□□ -2.27
RAD3P06839 STO1YMR125W 2586 nt0.85□□□□□ -2.27
RAD3P06839 PDE2YOR360C 1581 nt0.84□□□□□ -2.27
RAD3P06839 FIG4YNL325C 2640 nt0.84□□□□□ -2.27
RAD3P06839 snR72snR72 98 nt0.84□□□□□ -2.27
RAD3P06839 RRT1YBL048W 312 nt0.84□□□□□ -2.27
RAD3P06839 YOL014WYOL014W 375 nt0.84□□□□□ -2.27
RAD3P06839 MMS4YBR098W 2076 nt0.84□□□□□ -2.28
RAD3P06839 YDL073WYDL073W 2955 nt0.83□□□□□ -2.28
RAD3P06839 LCD1YDR499W 2244 nt0.83□□□□□ -2.28
RAD3P06839 NPC2YDL046W 522 nt0.83□□□□□ -2.28
RAD3P06839 YGR042WYGR042W 816 nt0.83□□□□□ -2.28
RAD3P06839 YIL142C-AYIL142C-A 333 nt0.83□□□□□ -2.28
RAD3P06839 YBL008W-AYBL008W-A 240 nt0.83□□□□□ -2.28
RAD3P06839 Q0017Q0017 162 nt0.83□□□□□ -2.28
RAD3P06839 YDL206WYDL206W 2289 nt0.83□□□□□ -2.28
RAD3P06839 EFR3YMR212C 2349 nt0.82□□□□□ -2.28
RAD3P06839 RPS24BYIL069C 408 nt0.82□□□□□ -2.28
RAD3P06839 YJL135WYJL135W 318 nt0.82□□□□□ -2.28
RAD3P06839 RPS27AYKL156W 249 nt0.82□□□□□ -2.28
RAD3P06839 YLR202CYLR202C 327 nt0.82□□□□□ -2.28
RAD3P06839 RIM20YOR275C 1986 nt0.82□□□□□ -2.28
RAD3P06839 ZIP2YGL249W 2115 nt0.81□□□□□ -2.28
RAD3P06839 YKL145W-AYKL145W-A 93 nt0.81□□□□□ -2.28
RAD3P06839 YKL202WYKL202W 582 nt0.81□□□□□ -2.28
RAD3P06839 YLR434CYLR434C 384 nt0.81□□□□□ -2.28
RAD3P06839 snR51snR51 107 nt0.81□□□□□ -2.28
RAD3P06839 YLR406C-AYLR406C-A 150 nt0.8□□□□□ -2.28
RAD3P06839 YOL160WYOL160W 342 nt0.8□□□□□ -2.28
RAD3P06839 RKR1YMR247C 4689 nt0.8□□□□□ -2.28
RAD3P06839 YJR157WYJR157W 363 nt0.79□□□□□ -2.28
RAD3P06839 YKL083WYKL083W 615 nt0.79□□□□□ -2.28
Retrieved 100 of 7,029 protein–RNA pairs in 18.1 ms