Protein–RNA interactions for Protein: P40968

CDC40, Pre-mRNA-processing factor 17, yeastyeast

Predicted RBP Predictions only

Length 455 aa.

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Protein RNA Prediction (catRAPID) Interaction (RIP-Chip)
Gene UniProt Accession Gene Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score Detected Interaction
CDC40P40968 SDH2YLL041C 801 nt1.13□□□□□ -2.23
CDC40P40968 YNL303WYNL303W 348 nt1.13□□□□□ -2.23
CDC40P40968 NUT2YPR168W 474 nt1.13□□□□□ -2.23
CDC40P40968 PXA2YKL188C 2562 nt1.13□□□□□ -2.23
CDC40P40968 NUP192YJL039C 5052 nt1.13□□□□□ -2.23
CDC40P40968 SPT21YMR179W 2277 nt1.13□□□□□ -2.23
CDC40P40968 AIM44YPL158C 2277 nt1.13□□□□□ -2.23
CDC40P40968 SAC3YDR159W 3906 nt1.12□□□□□ -2.23
CDC40P40968 YER076W-AYER076W-A 348 nt1.12□□□□□ -2.23
CDC40P40968 YHR125WYHR125W 306 nt1.12□□□□□ -2.23
CDC40P40968 AIM29YKR074W 468 nt1.12□□□□□ -2.23
CDC40P40968 CDC33YOL139C 642 nt1.12□□□□□ -2.23
CDC40P40968 YBR076C-AYBR076C-A 267 nt1.12□□□□□ -2.23
CDC40P40968 PIP2YOR363C 2991 nt1.12□□□□□ -2.23
CDC40P40968 TRM3YDL112W 4311 nt1.12□□□□□ -2.23
CDC40P40968 YOL159CYOL159C 516 nt1.11□□□□□ -2.23
CDC40P40968 YOR161W-BYOR161W-B 261 nt1.11□□□□□ -2.23
CDC40P40968 ADR1YDR216W 3972 nt1.11□□□□□ -2.23
CDC40P40968 MDS3YGL197W 4464 nt1.11□□□□□ -2.23
CDC40P40968 MPT5YGL178W 2580 nt1.1□□□□□ -2.23
CDC40P40968 SEC3YER008C 4011 nt1.1□□□□□ -2.23
CDC40P40968 RTR1YER139C 681 nt1.1□□□□□ -2.23
CDC40P40968 YHL037CYHL037C 402 nt1.1□□□□□ -2.23
CDC40P40968 RUF22RUF22 515 nt1.1□□□□□ -2.23
CDC40P40968 YNL122CYNL122C 348 nt1.1□□□□□ -2.23
CDC40P40968 SCW11YGL028C 1629 nt1.1□□□□□ -2.23
CDC40P40968 YER087C-AYER087C-A 552 nt1.09□□□□□ -2.23
CDC40P40968 YIL059CYIL059C 366 nt1.09□□□□□ -2.23
CDC40P40968 YIL066W-AYIL066W-A 444 nt1.09□□□□□ -2.23
CDC40P40968 YMR175W-AYMR175W-A 195 nt1.09□□□□□ -2.23
CDC40P40968 SLY1YDR189W 2001 nt1.09□□□□□ -2.24
CDC40P40968 YLL032CYLL032C 2478 nt1.09□□□□□ -2.24
CDC40P40968 APL1YJR005W 2103 nt1.09□□□□□ -2.24
CDC40P40968 RFX1YLR176C 2436 nt1.08□□□□□ -2.24
CDC40P40968 CAT8YMR280C 4302 nt1.08□□□□□ -2.24
CDC40P40968 EFR3YMR212C 2349 nt1.08□□□□□ -2.24
CDC40P40968 HIT1YJR055W 495 nt1.08□□□□□ -2.24
CDC40P40968 MRPL31YKL138C 396 nt1.08□□□□□ -2.24
CDC40P40968 CDC31YOR257W 486 nt1.08□□□□□ -2.24
CDC40P40968 YPL182CYPL182C 384 nt1.08□□□□□ -2.24
CDC40P40968 YPR177CYPR177C 372 nt1.08□□□□□ -2.24
CDC40P40968 SWI4YER111C 3282 nt1.08□□□□□ -2.24
CDC40P40968 YDR269CYDR269C 324 nt1.07□□□□□ -2.24
CDC40P40968 PFD1YJL179W 330 nt1.07□□□□□ -2.24
CDC40P40968 NFU1YKL040C 771 nt1.07□□□□□ -2.24
CDC40P40968 BI2Q0110 1272 nt1.06□□□□□ -2.24
CDC40P40968 YGR045CYGR045C 363 nt1.06□□□□□ -2.24
CDC40P40968 ANS1YHR126C 480 nt1.06□□□□□ -2.24
CDC40P40968 FYV7YLR068W 456 nt1.06□□□□□ -2.24
CDC40P40968 FIG4YNL325C 2640 nt1.06□□□□□ -2.24
CDC40P40968 CYC7YEL039C 342 nt1.05□□□□□ -2.24
CDC40P40968 snR54snR54 86 nt1.05□□□□□ -2.24
CDC40P40968 MAD1YGL086W 2250 nt1.04□□□□□ -2.24
CDC40P40968 YDR182W-AYDR182W-A 204 nt1.04□□□□□ -2.24
CDC40P40968 ECL1YGR146C 636 nt1.04□□□□□ -2.24
CDC40P40968 TIM13YGR181W 318 nt1.04□□□□□ -2.24
CDC40P40968 UPS1YLR193C 528 nt1.04□□□□□ -2.24
CDC40P40968 YOL013W-BYOL013W-B 291 nt1.04□□□□□ -2.24
CDC40P40968 ZEO1YOL109W 342 nt1.04□□□□□ -2.24
CDC40P40968 DOP1YDR141C 5097 nt1.04□□□□□ -2.24
CDC40P40968 NUT1YGL151W 3399 nt1.03□□□□□ -2.24
CDC40P40968 YBL071CYBL071C 309 nt1.03□□□□□ -2.24
CDC40P40968 CDC25YLR310C 4770 nt1.03□□□□□ -2.24
CDC40P40968 SPC98YNL126W 2541 nt1.03□□□□□ -2.25
CDC40P40968 EAF1YDR359C 2949 nt1.02□□□□□ -2.25
CDC40P40968 YLR171WYLR171W 390 nt1.02□□□□□ -2.25
CDC40P40968 YLR287CYLR287C 1068 nt1.02□□□□□ -2.25
CDC40P40968 APL3YBL037W 3078 nt1.02□□□□□ -2.25
CDC40P40968 YBR221W-AYBR221W-A 105 nt1.02□□□□□ -2.25
CDC40P40968 GAL7YBR018C 1101 nt1.01□□□□□ -2.25
CDC40P40968 RPB10YOR210W 213 nt1.01□□□□□ -2.25
CDC40P40968 snR41snR41 95 nt1.01□□□□□ -2.25
CDC40P40968 APL2YKL135C 2181 nt1.01□□□□□ -2.25
CDC40P40968 YBR012CYBR012C 420 nt1□□□□□ -2.25
CDC40P40968 RPL33BYOR234C 324 nt1□□□□□ -2.25
CDC40P40968 STB6YKL072W 2301 nt1□□□□□ -2.25
CDC40P40968 LCD1YDR499W 2244 nt1□□□□□ -2.25
CDC40P40968 STO1YMR125W 2586 nt1□□□□□ -2.25
CDC40P40968 NPC2YDL046W 522 nt0.99□□□□□ -2.25
CDC40P40968 ZIP2YGL249W 2115 nt0.99□□□□□ -2.25
CDC40P40968 TOM22YNL131W 459 nt0.99□□□□□ -2.25
CDC40P40968 YOR192C-CYOR192C-C 237 nt0.99□□□□□ -2.25
CDC40P40968 LOA1YPR139C 903 nt0.99□□□□□ -2.25
CDC40P40968 SET3YKR029C 2256 nt0.99□□□□□ -2.25
CDC40P40968 SLI15YBR156C 2097 nt0.98□□□□□ -2.25
CDC40P40968 tH(GUG)E1tH(GUG)E1 72 nt0.98□□□□□ -2.25
CDC40P40968 tH(GUG)E2tH(GUG)E2 72 nt0.98□□□□□ -2.25
CDC40P40968 tH(GUG)G1tH(GUG)G1 72 nt0.98□□□□□ -2.25
CDC40P40968 tH(GUG)G2tH(GUG)G2 72 nt0.98□□□□□ -2.25
CDC40P40968 tH(GUG)HtH(GUG)H 72 nt0.98□□□□□ -2.25
CDC40P40968 tH(GUG)KtH(GUG)K 72 nt0.98□□□□□ -2.25
CDC40P40968 tH(GUG)MtH(GUG)M 72 nt0.98□□□□□ -2.25
CDC40P40968 RRT1YBL048W 312 nt0.98□□□□□ -2.25
CDC40P40968 YBR200W-AYBR200W-A 165 nt0.98□□□□□ -2.25
CDC40P40968 MMS4YBR098W 2076 nt0.98□□□□□ -2.25
CDC40P40968 ENV11YGR071C 2583 nt0.97□□□□□ -2.25
CDC40P40968 WIP1YDR374W-A 270 nt0.97□□□□□ -2.25
CDC40P40968 YEL030C-AYEL030C-A 315 nt0.97□□□□□ -2.25
CDC40P40968 YER006C-AYER006C-A 318 nt0.97□□□□□ -2.25
CDC40P40968 YMR141W-AYMR141W-A 225 nt0.97□□□□□ -2.25
Retrieved 100 of 7,029 protein–RNA pairs in 68.1 ms