Protein–RNA interactions for Protein: P0CH08

RPL40A, Ubiquitin-60S ribosomal protein L40, yeastyeast

Known RBP Predictions only

Length 128 aa.

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Protein RNA Prediction (catRAPID) Interaction (RIP-Chip)
Gene UniProt Accession Gene Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score Detected Interaction
RPL40AP0CH08 YAP3YHL009C 993 nt0.55□□□□□ -2.32
RPL40AP0CH08 VPS63YLR261C 327 nt0.55□□□□□ -2.32
RPL40AP0CH08 RUB1YDR139C 234 nt0.54□□□□□ -2.32
RPL40AP0CH08 RMD6YEL072W 696 nt0.54□□□□□ -2.32
RPL40AP0CH08 CRG1YHR209W 876 nt0.54□□□□□ -2.32
RPL40AP0CH08 YJL086CYJL086C 369 nt0.54□□□□□ -2.32
RPL40AP0CH08 HYM1YKL189W 1200 nt0.54□□□□□ -2.32
RPL40AP0CH08 GIM5YML094W 492 nt0.54□□□□□ -2.32
RPL40AP0CH08 YMR031W-AYMR031W-A 327 nt0.54□□□□□ -2.32
RPL40AP0CH08 YMR158C-AYMR158C-A 138 nt0.54□□□□□ -2.32
RPL40AP0CH08 BRX1YOL077C 876 nt0.54□□□□□ -2.32
RPL40AP0CH08 UFE1YOR075W 1041 nt0.54□□□□□ -2.32
RPL40AP0CH08 YPR159C-AYPR159C-A 102 nt0.54□□□□□ -2.32
RPL40AP0CH08 STB6YKL072W 2301 nt0.54□□□□□ -2.32
RPL40AP0CH08 AIM9YER080W 1884 nt0.54□□□□□ -2.32
RPL40AP0CH08 GDS1YOR355W 1569 nt0.53□□□□□ -2.32
RPL40AP0CH08 SPT21YMR179W 2277 nt0.53□□□□□ -2.32
RPL40AP0CH08 VPS74YDR372C 1038 nt0.53□□□□□ -2.32
RPL40AP0CH08 RTR1YER139C 681 nt0.53□□□□□ -2.32
RPL40AP0CH08 YGR265WYGR265W 411 nt0.53□□□□□ -2.32
RPL40AP0CH08 SLS1YLR139C 1932 nt0.52□□□□□ -2.33
RPL40AP0CH08 LSO2YGR169C-A 279 nt0.52□□□□□ -2.33
RPL40AP0CH08 RCN1YKL159C 636 nt0.52□□□□□ -2.33
RPL40AP0CH08 SEC22YLR268W 645 nt0.52□□□□□ -2.33
RPL40AP0CH08 DDR48YMR173W 1293 nt0.52□□□□□ -2.33
RPL40AP0CH08 YBR184WYBR184W 1572 nt0.52□□□□□ -2.33
RPL40AP0CH08 YLL007CYLL007C 1998 nt0.52□□□□□ -2.33
RPL40AP0CH08 CHZ1YER030W 462 nt0.51□□□□□ -2.33
RPL40AP0CH08 VMA7YGR020C 357 nt0.51□□□□□ -2.33
RPL40AP0CH08 DPB11YJL090C 2295 nt0.51□□□□□ -2.33
RPL40AP0CH08 SUS1YBR111W-A 291 nt0.51□□□□□ -2.33
RPL40AP0CH08 HAL9YOL089C 3093 nt0.51□□□□□ -2.33
RPL40AP0CH08 YDR034C-CYDR034C-C 1317 nt0.5□□□□□ -2.33
RPL40AP0CH08 YFL002W-BYFL002W-B 1317 nt0.5□□□□□ -2.33
RPL40AP0CH08 YGR161W-AYGR161W-A 1317 nt0.5□□□□□ -2.33
RPL40AP0CH08 YLR410W-AYLR410W-A 1317 nt0.5□□□□□ -2.33
RPL40AP0CH08 YBL100W-AYBL100W-A 1317 nt0.5□□□□□ -2.33
RPL40AP0CH08 YOR192C-AYOR192C-A 1317 nt0.5□□□□□ -2.33
RPL40AP0CH08 YCL020WYCL020W 1317 nt0.5□□□□□ -2.33
RPL40AP0CH08 YGL042CYGL042C 306 nt0.5□□□□□ -2.33
RPL40AP0CH08 RPL42BYHR141C 321 nt0.5□□□□□ -2.33
RPL40AP0CH08 YMR324CYMR324C 243 nt0.5□□□□□ -2.33
RPL40AP0CH08 RPL42AYNL162W 321 nt0.5□□□□□ -2.33
RPL40AP0CH08 TOF2YKR010C 2316 nt0.5□□□□□ -2.33
RPL40AP0CH08 SWI6YLR182W 2412 nt0.49□□□□□ -2.33
RPL40AP0CH08 KAR3YPR141C 2190 nt0.49□□□□□ -2.33
RPL40AP0CH08 CYC7YEL039C 342 nt0.49□□□□□ -2.33
RPL40AP0CH08 IES5YER092W 378 nt0.49□□□□□ -2.33
RPL40AP0CH08 YDL068WYDL068W 330 nt0.48□□□□□ -2.33
RPL40AP0CH08 RPS30AYLR287C-A 192 nt0.48□□□□□ -2.33
RPL40AP0CH08 NBP1YLR457C 960 nt0.48□□□□□ -2.33
RPL40AP0CH08 15S_rRNA15S_rRNA 1649 nt0.48□□□□□ -2.33
RPL40AP0CH08 REF2YDR195W 1602 nt0.48□□□□□ -2.33
RPL40AP0CH08 NUP82YJL061W 2142 nt0.47□□□□□ -2.33
RPL40AP0CH08 SWT1YOR166C 1377 nt0.47□□□□□ -2.33
RPL40AP0CH08 PXA2YKL188C 2562 nt0.47□□□□□ -2.33
RPL40AP0CH08 YBR063CYBR063C 1215 nt0.47□□□□□ -2.33
RPL40AP0CH08 UTP10YJL109C 5310 nt0.47□□□□□ -2.33
RPL40AP0CH08 AIM44YPL158C 2277 nt0.47□□□□□ -2.33
RPL40AP0CH08 CSE1YGL238W 2883 nt0.46□□□□□ -2.34
RPL40AP0CH08 RPS7BYNL096C 573 nt0.46□□□□□ -2.34
RPL40AP0CH08 MPT5YGL178W 2580 nt0.46□□□□□ -2.34
RPL40AP0CH08 SLY1YDR189W 2001 nt0.45□□□□□ -2.34
RPL40AP0CH08 YDR248CYDR248C 582 nt0.45□□□□□ -2.34
RPL40AP0CH08 TIM8YJR135W-A 264 nt0.45□□□□□ -2.34
RPL40AP0CH08 YPR172WYPR172W 603 nt0.45□□□□□ -2.34
RPL40AP0CH08 DAD1YDR016C 285 nt0.44□□□□□ -2.34
RPL40AP0CH08 SMB1YER029C 591 nt0.44□□□□□ -2.34
RPL40AP0CH08 RPL22BYFL034C-A 369 nt0.44□□□□□ -2.34
RPL40AP0CH08 YGR270C-AYGR270C-A 219 nt0.44□□□□□ -2.34
RPL40AP0CH08 YIL030W-AYIL030W-A 339 nt0.44□□□□□ -2.34
RPL40AP0CH08 YBR200W-AYBR200W-A 165 nt0.44□□□□□ -2.34
RPL40AP0CH08 NOC3YLR002C 1992 nt0.44□□□□□ -2.34
RPL40AP0CH08 MXR1YER042W 555 nt0.43□□□□□ -2.34
RPL40AP0CH08 DFG10YIL049W 762 nt0.43□□□□□ -2.34
RPL40AP0CH08 RPL37AYLR185W 267 nt0.43□□□□□ -2.34
RPL40AP0CH08 YPL080CYPL080C 327 nt0.43□□□□□ -2.34
RPL40AP0CH08 YPL119C-AYPL119C-A 264 nt0.43□□□□□ -2.34
RPL40AP0CH08 WAR1YML076C 2835 nt0.43□□□□□ -2.34
RPL40AP0CH08 RSM23YGL129C 1353 nt0.43□□□□□ -2.34
RPL40AP0CH08 YDL206WYDL206W 2289 nt0.43□□□□□ -2.34
RPL40AP0CH08 YGR290WYGR290W 444 nt0.42□□□□□ -2.34
RPL40AP0CH08 ARV1YLR242C 966 nt0.42□□□□□ -2.34
RPL40AP0CH08 YBR012CYBR012C 420 nt0.42□□□□□ -2.34
RPL40AP0CH08 YBR221W-AYBR221W-A 105 nt0.42□□□□□ -2.34
RPL40AP0CH08 NNF2YGR089W 2811 nt0.42□□□□□ -2.34
RPL40AP0CH08 ZIP1YDR285W 2628 nt0.41□□□□□ -2.34
RPL40AP0CH08 SRP14YDL092W 441 nt0.41□□□□□ -2.34
RPL40AP0CH08 YGL109WYGL109W 324 nt0.41□□□□□ -2.34
RPL40AP0CH08 IES4YOR189W 351 nt0.41□□□□□ -2.34
RPL40AP0CH08 SPR2YOR214C 711 nt0.41□□□□□ -2.34
RPL40AP0CH08 SAG1YJR004C 1953 nt0.41□□□□□ -2.34
RPL40AP0CH08 HDA3YPR179C 1968 nt0.41□□□□□ -2.34
RPL40AP0CH08 ENV11YGR071C 2583 nt0.41□□□□□ -2.34
RPL40AP0CH08 YOR192C-BYOR192C-B 5313 nt0.4□□□□□ -2.34
RPL40AP0CH08 RKR1YMR247C 4689 nt0.39□□□□□ -2.35
RPL40AP0CH08 SWI5YDR146C 2130 nt0.39□□□□□ -2.35
RPL40AP0CH08 YER038W-AYER038W-A 381 nt0.39□□□□□ -2.35
RPL40AP0CH08 RPL38YLR325C 237 nt0.39□□□□□ -2.35
RPL40AP0CH08 NUT2YPR168W 474 nt0.39□□□□□ -2.35
Retrieved 100 of 7,029 protein–RNA pairs in 42.7 ms