Protein–RNA interactions for Protein: Q00578

SSL2, General transcription and DNA repair factor IIH helicase subunit XPB, yeastyeast

Predictions only

Length 843 aa.

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Protein RNA Prediction (catRAPID) Interaction (RIP-Chip)
Gene UniProt Accession Gene Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score Detected Interaction
SSL2Q00578 SGS1YMR190C 4344 nt2.71□□□□□ -1.98
SSL2Q00578 NPR3YHL023C 3441 nt2.71□□□□□ -1.98
SSL2Q00578 YGR151CYGR151C 336 nt2.71□□□□□ -1.98
SSL2Q00578 RAM2YKL019W 951 nt2.71□□□□□ -1.98
SSL2Q00578 RPL36AYMR194W 303 nt2.71□□□□□ -1.98
SSL2Q00578 FPR1YNL135C 345 nt2.71□□□□□ -1.98
SSL2Q00578 MMS1YPR164W 4224 nt2.71□□□□□ -1.98
SSL2Q00578 YBL005W-BYBL005W-B 5268 nt2.7□□□□□ -1.98
SSL2Q00578 COG8YML071C 1824 nt2.7□□□□□ -1.98
SSL2Q00578 DIS3YOL021C 3006 nt2.7□□□□□ -1.98
SSL2Q00578 PTP3YER075C 2787 nt2.7□□□□□ -1.98
SSL2Q00578 DNF1YER166W 4716 nt2.7□□□□□ -1.98
SSL2Q00578 DBP10YDL031W 2988 nt2.7□□□□□ -1.98
SSL2Q00578 RPA34YJL148W 702 nt2.7□□□□□ -1.98
SSL2Q00578 MBB1YJL199C 327 nt2.7□□□□□ -1.98
SSL2Q00578 YOR011W-AYOR011W-A 207 nt2.7□□□□□ -1.98
SSL2Q00578 SAR1YPL218W 573 nt2.7□□□□□ -1.98
SSL2Q00578 SMY2YBR172C 2223 nt2.7□□□□□ -1.98
SSL2Q00578 RLI1YDR091C 1827 nt2.7□□□□□ -1.98
SSL2Q00578 PHO91YNR013C 2685 nt2.69□□□□□ -1.98
SSL2Q00578 tC(GCA)BtC(GCA)B 72 nt2.69□□□□□ -1.98
SSL2Q00578 tC(GCA)GtC(GCA)G 72 nt2.69□□□□□ -1.98
SSL2Q00578 tC(GCA)P1tC(GCA)P1 72 nt2.69□□□□□ -1.98
SSL2Q00578 tC(GCA)P2tC(GCA)P2 72 nt2.69□□□□□ -1.98
SSL2Q00578 ATP8Q0080 147 nt2.69□□□□□ -1.98
SSL2Q00578 HYP2YEL034W 474 nt2.69□□□□□ -1.98
SSL2Q00578 YHL041WYHL041W 450 nt2.69□□□□□ -1.98
SSL2Q00578 PHS1YJL097W 654 nt2.69□□□□□ -1.98
SSL2Q00578 YJL070CYJL070C 2667 nt2.69□□□□□ -1.98
SSL2Q00578 CYR1YJL005W 6081 nt2.68□□□□□ -1.98
SSL2Q00578 AMS1YGL156W 3252 nt2.68□□□□□ -1.98
SSL2Q00578 SWA2YDR320C 2007 nt2.68□□□□□ -1.98
SSL2Q00578 YHL042WYHL042W 453 nt2.68□□□□□ -1.98
SSL2Q00578 MRPL33YMR286W 261 nt2.68□□□□□ -1.98
SSL2Q00578 EDS1YBR033W 2760 nt2.68□□□□□ -1.98
SSL2Q00578 SLN1YIL147C 3663 nt2.67□□□□□ -1.98
SSL2Q00578 KAR3YPR141C 2190 nt2.67□□□□□ -1.98
SSL2Q00578 IPT1YDR072C 1584 nt2.67□□□□□ -1.98
SSL2Q00578 YOR302WYOR302W 78 nt2.67□□□□□ -1.98
SSL2Q00578 KSP1YHR082C 3090 nt2.67□□□□□ -1.98
SSL2Q00578 SOK2YMR016C 2358 nt2.66□□□□□ -1.98
SSL2Q00578 YIL080WYIL080W 4722 nt2.66□□□□□ -1.98
SSL2Q00578 YDR239CYDR239C 2364 nt2.66□□□□□ -1.98
SSL2Q00578 SDC25YLL016W 3147 nt2.66□□□□□ -1.98
SSL2Q00578 SGM1YJR134C 2124 nt2.65□□□□□ -1.98
SSL2Q00578 YDL007C-AYDL007C-A 258 nt2.65□□□□□ -1.99
SSL2Q00578 YLR053CYLR053C 327 nt2.65□□□□□ -1.99
SSL2Q00578 RGM1YMR182C 636 nt2.65□□□□□ -1.99
SSL2Q00578 HOS4YIL112W 3252 nt2.65□□□□□ -1.99
SSL2Q00578 SNU114YKL173W 3027 nt2.65□□□□□ -1.99
SSL2Q00578 TOP2YNL088W 4287 nt2.65□□□□□ -1.99
SSL2Q00578 MGM1YOR211C 2646 nt2.64□□□□□ -1.99
SSL2Q00578 RIM20YOR275C 1986 nt2.64□□□□□ -1.99
SSL2Q00578 snR55snR55 98 nt2.64□□□□□ -1.99
SSL2Q00578 YGL024WYGL024W 336 nt2.64□□□□□ -1.99
SSL2Q00578 YMR172C-AYMR172C-A 384 nt2.64□□□□□ -1.99
SSL2Q00578 RTC6YPL183W-A 282 nt2.64□□□□□ -1.99
SSL2Q00578 YPR089WYPR089W 2667 nt2.64□□□□□ -1.99
SSL2Q00578 YDR098C-BYDR098C-B 5268 nt2.63□□□□□ -1.99
SSL2Q00578 YDR210C-DYDR210C-D 5268 nt2.63□□□□□ -1.99
SSL2Q00578 YDR316W-BYDR316W-B 5268 nt2.63□□□□□ -1.99
SSL2Q00578 YDR365W-BYDR365W-B 5268 nt2.63□□□□□ -1.99
SSL2Q00578 YER138CYER138C 5268 nt2.63□□□□□ -1.99
SSL2Q00578 YER160CYER160C 5268 nt2.63□□□□□ -1.99
SSL2Q00578 YGR038C-BYGR038C-B 5268 nt2.63□□□□□ -1.99
SSL2Q00578 YGR161C-DYGR161C-D 5268 nt2.63□□□□□ -1.99
SSL2Q00578 YJR027WYJR027W 5268 nt2.63□□□□□ -1.99
SSL2Q00578 YLR157C-BYLR157C-B 5268 nt2.63□□□□□ -1.99
SSL2Q00578 YML039WYML039W 5268 nt2.63□□□□□ -1.99
SSL2Q00578 YML045WYML045W 5268 nt2.63□□□□□ -1.99
SSL2Q00578 YMR050CYMR050C 5268 nt2.63□□□□□ -1.99
SSL2Q00578 YOL103W-BYOL103W-B 5268 nt2.63□□□□□ -1.99
SSL2Q00578 YBR012W-BYBR012W-B 5271 nt2.63□□□□□ -1.99
SSL2Q00578 YOR142W-BYOR142W-B 5268 nt2.63□□□□□ -1.99
SSL2Q00578 YPL257W-BYPL257W-B 5268 nt2.63□□□□□ -1.99
SSL2Q00578 YPR158W-BYPR158W-B 5271 nt2.63□□□□□ -1.99
SSL2Q00578 SAK1YER129W 3429 nt2.63□□□□□ -1.99
SSL2Q00578 PSD2YGR170W 3417 nt2.63□□□□□ -1.99
SSL2Q00578 YRB1YDR002W 606 nt2.63□□□□□ -1.99
SSL2Q00578 YGL069CYGL069C 465 nt2.63□□□□□ -1.99
SSL2Q00578 LSM7YNL147W 348 nt2.63□□□□□ -1.99
SSL2Q00578 YNL338WYNL338W 159 nt2.63□□□□□ -1.99
SSL2Q00578 HHT1YBR010W 411 nt2.63□□□□□ -1.99
SSL2Q00578 YPR063CYPR063C 423 nt2.63□□□□□ -1.99
SSL2Q00578 MVP1YMR004W 1536 nt2.63□□□□□ -1.99
SSL2Q00578 NCL1YBL024W 2055 nt2.62□□□□□ -1.99
SSL2Q00578 ISW1YBR245C 3390 nt2.62□□□□□ -1.99
SSL2Q00578 RBK1YCR036W 1002 nt2.62□□□□□ -1.99
SSL2Q00578 GPG1YGL121C 381 nt2.62□□□□□ -1.99
SSL2Q00578 RPS29AYLR388W 171 nt2.62□□□□□ -1.99
SSL2Q00578 YBR197CYBR197C 654 nt2.62□□□□□ -1.99
SSL2Q00578 MDM20YOL076W 2391 nt2.62□□□□□ -1.99
SSL2Q00578 MPH1YIR002C 2982 nt2.61□□□□□ -1.99
SSL2Q00578 YKU80YMR106C 1890 nt2.61□□□□□ -1.99
SSL2Q00578 snR60snR60 104 nt2.61□□□□□ -1.99
SSL2Q00578 YDL185C-AYDL185C-A 228 nt2.61□□□□□ -1.99
SSL2Q00578 SPF1YEL031W 3648 nt2.61□□□□□ -1.99
SSL2Q00578 YNL018CYNL018C 1839 nt2.61□□□□□ -1.99
SSL2Q00578 FAR11YNL127W 2862 nt2.6□□□□□ -1.99
SSL2Q00578 TFC3YAL001C 3483 nt2.6□□□□□ -1.99
Retrieved 100 of 7,029 protein–RNA pairs in 75.6 ms