Protein–RNA interactions for Protein: P54000

SUB1, RNA polymerase II transcriptional coactivator SUB1, yeastyeast

Known RBP Predictions only

Length 292 aa.

Download Table  
Protein RNA Prediction (catRAPID) Interaction (RIP-Chip)
Gene UniProt Accession Gene Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score Detected Interaction
SUB1P54000 YFR016CYFR016C 3702 nt2.33□□□□□ -2.04
SUB1P54000 TFC3YAL001C 3483 nt2.33□□□□□ -2.04
SUB1P54000 MSH6YDR097C 3729 nt2.33□□□□□ -2.04
SUB1P54000 SEC63YOR254C 1992 nt2.33□□□□□ -2.04
SUB1P54000 YDL118WYDL118W 381 nt2.33□□□□□ -2.04
SUB1P54000 RTR2YDR066C 591 nt2.33□□□□□ -2.04
SUB1P54000 IES5YER092W 378 nt2.33□□□□□ -2.04
SUB1P54000 GET1YGL020C 708 nt2.33□□□□□ -2.04
SUB1P54000 BER1YLR412W 825 nt2.33□□□□□ -2.04
SUB1P54000 MRPL44YMR225C 297 nt2.33□□□□□ -2.04
SUB1P54000 NOP14YDL148C 2433 nt2.32□□□□□ -2.04
SUB1P54000 YDL016CYDL016C 303 nt2.32□□□□□ -2.04
SUB1P54000 tW(CCA)G1tW(CCA)G1 72 nt2.32□□□□□ -2.04
SUB1P54000 tW(CCA)G2tW(CCA)G2 72 nt2.32□□□□□ -2.04
SUB1P54000 tW(CCA)JtW(CCA)J 72 nt2.32□□□□□ -2.04
SUB1P54000 tW(CCA)KtW(CCA)K 72 nt2.32□□□□□ -2.04
SUB1P54000 tW(CCA)MtW(CCA)M 72 nt2.32□□□□□ -2.04
SUB1P54000 tW(CCA)PtW(CCA)P 72 nt2.32□□□□□ -2.04
SUB1P54000 DGK1YOR311C 873 nt2.32□□□□□ -2.04
SUB1P54000 YPL276WYPL276W 438 nt2.32□□□□□ -2.04
SUB1P54000 HSH155YMR288W 2916 nt2.32□□□□□ -2.04
SUB1P54000 SCH9YHR205W 2475 nt2.32□□□□□ -2.04
SUB1P54000 DAS1YJL149W 1992 nt2.32□□□□□ -2.04
SUB1P54000 PKH3YDR466W 2697 nt2.32□□□□□ -2.04
SUB1P54000 SGD1YLR336C 2700 nt2.32□□□□□ -2.04
SUB1P54000 UFD4YKL010C 4452 nt2.31□□□□□ -2.04
SUB1P54000 VPS52YDR484W 1926 nt2.31□□□□□ -2.04
SUB1P54000 YDL041WYDL041W 354 nt2.31□□□□□ -2.04
SUB1P54000 TMN3YER113C 2121 nt2.31□□□□□ -2.04
SUB1P54000 IRC19YLL033W 693 nt2.31□□□□□ -2.04
SUB1P54000 IRC10YOL015W 1761 nt2.31□□□□□ -2.04
SUB1P54000 HNT1YDL125C 477 nt2.3□□□□□ -2.04
SUB1P54000 YKL044WYKL044W 321 nt2.3□□□□□ -2.04
SUB1P54000 PDR11YIL013C 4236 nt2.3□□□□□ -2.04
SUB1P54000 NOT5YPR072W 1683 nt2.3□□□□□ -2.04
SUB1P54000 FKS3YMR306W 5358 nt2.29□□□□□ -2.04
SUB1P54000 GCN2YDR283C 4980 nt2.29□□□□□ -2.04
SUB1P54000 YCR043CYCR043C 384 nt2.29□□□□□ -2.04
SUB1P54000 YDL158CYDL158C 309 nt2.29□□□□□ -2.04
SUB1P54000 LSO2YGR169C-A 279 nt2.29□□□□□ -2.04
SUB1P54000 GIC1YHR061C 945 nt2.29□□□□□ -2.04
SUB1P54000 YJR141WYJR141W 1044 nt2.29□□□□□ -2.04
SUB1P54000 RMP1YLR145W 606 nt2.29□□□□□ -2.04
SUB1P54000 ZRG8YER033C 3231 nt2.29□□□□□ -2.04
SUB1P54000 YHR214C-CYHR214C-C 1437 nt2.28□□□□□ -2.04
SUB1P54000 KAR3YPR141C 2190 nt2.28□□□□□ -2.04
SUB1P54000 YKL111CYKL111C 336 nt2.28□□□□□ -2.04
SUB1P54000 DGR1YNL130C-A 147 nt2.28□□□□□ -2.04
SUB1P54000 MNL2YLR057W 2550 nt2.28□□□□□ -2.04
SUB1P54000 VTC3YPL019C 2508 nt2.28□□□□□ -2.04
SUB1P54000 SEY1YOR165W 2331 nt2.28□□□□□ -2.05
SUB1P54000 SPR3YGR059W 1539 nt2.27□□□□□ -2.05
SUB1P54000 RPC10YHR143W-A 213 nt2.27□□□□□ -2.05
SUB1P54000 TIF11YMR260C 462 nt2.27□□□□□ -2.05
SUB1P54000 RPS12YOR369C 432 nt2.27□□□□□ -2.05
SUB1P54000 KOG1YHR186C 4674 nt2.27□□□□□ -2.05
SUB1P54000 YCR102W-AYCR102W-A 198 nt2.26□□□□□ -2.05
SUB1P54000 YER088C-AYER088C-A 324 nt2.26□□□□□ -2.05
SUB1P54000 YJR079WYJR079W 330 nt2.26□□□□□ -2.05
SUB1P54000 YBL083CYBL083C 426 nt2.26□□□□□ -2.05
SUB1P54000 YNR025CYNR025C 360 nt2.26□□□□□ -2.05
SUB1P54000 MEI5YPL121C 669 nt2.26□□□□□ -2.05
SUB1P54000 SLM1YIL105C 2061 nt2.26□□□□□ -2.05
SUB1P54000 RBK1YCR036W 1002 nt2.25□□□□□ -2.05
SUB1P54000 YJL052C-AYJL052C-A 120 nt2.25□□□□□ -2.05
SUB1P54000 YBR224WYBR224W 516 nt2.25□□□□□ -2.05
SUB1P54000 SLM6YBR266C 453 nt2.25□□□□□ -2.05
SUB1P54000 IRR1YIL026C 3453 nt2.25□□□□□ -2.05
SUB1P54000 MYO4YAL029C 4416 nt2.24□□□□□ -2.05
SUB1P54000 LYS9YNR050C 1341 nt2.24□□□□□ -2.05
SUB1P54000 YBR012W-AYBR012W-A 1323 nt2.24□□□□□ -2.05
SUB1P54000 YOR142W-AYOR142W-A 1323 nt2.24□□□□□ -2.05
SUB1P54000 YPR158W-AYPR158W-A 1323 nt2.24□□□□□ -2.05
SUB1P54000 YDR133CYDR133C 336 nt2.24□□□□□ -2.05
SUB1P54000 YER121WYER121W 345 nt2.24□□□□□ -2.05
SUB1P54000 PRM8YGL053W 714 nt2.24□□□□□ -2.05
SUB1P54000 KCS1YDR017C 3153 nt2.24□□□□□ -2.05
SUB1P54000 LHS1YKL073W 2646 nt2.23□□□□□ -2.05
SUB1P54000 HIR3YJR140C 4947 nt2.23□□□□□ -2.05
SUB1P54000 YDR210W-AYDR210W-A 1317 nt2.23□□□□□ -2.05
SUB1P54000 MET32YDR253C 576 nt2.23□□□□□ -2.05
SUB1P54000 YER188C-AYER188C-A 300 nt2.23□□□□□ -2.05
SUB1P54000 ILM1YJR118C 612 nt2.23□□□□□ -2.05
SUB1P54000 SVS1YPL163C 783 nt2.23□□□□□ -2.05
SUB1P54000 SAR1YPL218W 573 nt2.23□□□□□ -2.05
SUB1P54000 SPP41YDR464W 4308 nt2.23□□□□□ -2.05
SUB1P54000 PEP3YLR148W 2757 nt2.22□□□□□ -2.05
SUB1P54000 snR84snR84 550 nt2.22□□□□□ -2.05
SUB1P54000 YDR029WYDR029W 315 nt2.22□□□□□ -2.05
SUB1P54000 YHR210CYHR210C 1026 nt2.22□□□□□ -2.05
SUB1P54000 COA4YLR218C 453 nt2.22□□□□□ -2.05
SUB1P54000 PRE8YML092C 753 nt2.22□□□□□ -2.05
SUB1P54000 DNA2YHR164C 4569 nt2.22□□□□□ -2.05
SUB1P54000 CDC24YAL041W 2565 nt2.22□□□□□ -2.05
SUB1P54000 MDM20YOL076W 2391 nt2.21□□□□□ -2.06
SUB1P54000 YMR247W-AYMR247W-A 144 nt2.21□□□□□ -2.06
SUB1P54000 COX7YMR256C 183 nt2.21□□□□□ -2.06
SUB1P54000 LRE1YCL051W 1752 nt2.21□□□□□ -2.06
SUB1P54000 YHR214C-BYHR214C-B 5382 nt2.2□□□□□ -2.06
SUB1P54000 PEP1YBL017C 4740 nt2.2□□□□□ -2.06
Retrieved 100 of 7,029 protein–RNA pairs in 18.2 ms