Protein–RNA interactions for Protein: S4R1G7

H2afb3, Histone H2A, mousemouse

Predictions only

Length 115 aa.

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Protein RNA Prediction (catRAPID) Interaction (Experimental data)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
H2afb3S4R1G7 Mcat-201ENSMUST00000061882 1893 ntAPPRIS P1 TSL 1 (best) BASIC21.69■■□□□ 1.06
H2afb3S4R1G7 Znrf2-201ENSMUST00000079869 5886 ntAPPRIS P1 TSL 1 (best) BASIC21.68■■□□□ 1.06
H2afb3S4R1G7 Odc1-201ENSMUST00000171737 2208 ntAPPRIS P1 TSL 1 (best) BASIC21.67■■□□□ 1.06
H2afb3S4R1G7 Mat2b-201ENSMUST00000040167 1949 ntAPPRIS P1 TSL 1 (best) BASIC21.67■■□□□ 1.06
H2afb3S4R1G7 Neurog2-201ENSMUST00000029587 2227 ntAPPRIS P1 TSL 1 (best) BASIC21.66■■□□□ 1.06
H2afb3S4R1G7 Tsc22d1-204ENSMUST00000110888 4999 ntTSL 1 (best) BASIC21.66■■□□□ 1.06
H2afb3S4R1G7 Hrh3-208ENSMUST00000171736 906 ntTSL 5 BASIC21.65■■□□□ 1.06
H2afb3S4R1G7 Ccdc122-202ENSMUST00000095625 1195 ntAPPRIS ALT2 TSL 1 (best) BASIC21.65■■□□□ 1.06
H2afb3S4R1G7 Marveld2-202ENSMUST00000163163 2187 ntTSL 1 (best) BASIC21.64■■□□□ 1.06
H2afb3S4R1G7 Fam60a-203ENSMUST00000111562 906 ntAPPRIS P1 TSL 3 BASIC21.64■■□□□ 1.05
H2afb3S4R1G7 Rtn4r-201ENSMUST00000059589 1938 ntAPPRIS P1 TSL 1 (best) BASIC21.64■■□□□ 1.05
H2afb3S4R1G7 Smurf1-203ENSMUST00000110677 5420 ntTSL 5 BASIC21.64■■□□□ 1.05
H2afb3S4R1G7 Cabp1-204ENSMUST00000112113 1621 ntTSL 1 (best) BASIC21.62■■□□□ 1.05
H2afb3S4R1G7 Tor1a-201ENSMUST00000028200 1401 ntAPPRIS P1 TSL 1 (best) BASIC21.62■■□□□ 1.05
H2afb3S4R1G7 Tmeff1-202ENSMUST00000123476 1224 ntAPPRIS P1 TSL 1 (best) BASIC21.61■■□□□ 1.05
H2afb3S4R1G7 Reep6-202ENSMUST00000105354 2208 ntAPPRIS P3 TSL 1 (best) BASIC21.61■■□□□ 1.05
H2afb3S4R1G7 Reep6-205ENSMUST00000105358 2208 ntTSL 1 (best) BASIC21.61■■□□□ 1.05
H2afb3S4R1G7 Slc16a8-201ENSMUST00000039752 1806 ntAPPRIS P1 TSL 1 (best) BASIC21.61■■□□□ 1.05
H2afb3S4R1G7 Slc35a3-202ENSMUST00000120120 1791 ntAPPRIS P1 TSL 1 (best) BASIC21.61■■□□□ 1.05
H2afb3S4R1G7 Cdc14b-207ENSMUST00000221634 1953 ntAPPRIS ALT2 TSL 1 (best) BASIC21.6■■□□□ 1.05
H2afb3S4R1G7 Tspan33-201ENSMUST00000046750 1994 ntAPPRIS P3 TSL 1 (best) BASIC21.6■■□□□ 1.05
H2afb3S4R1G7 CT030161.2-201ENSMUST00000218666 735 ntTSL 3 BASIC21.6■■□□□ 1.05
H2afb3S4R1G7 Srsf9-201ENSMUST00000031513 1162 ntAPPRIS P1 TSL 1 (best) BASIC21.6■■□□□ 1.05
H2afb3S4R1G7 Nelfe-204ENSMUST00000173357 1399 ntAPPRIS P1 TSL 1 (best) BASIC21.6■■□□□ 1.05
H2afb3S4R1G7 Junos-204ENSMUST00000128094 830 ntTSL 1 (best) BASIC21.59■■□□□ 1.05
H2afb3S4R1G7 Maz-202ENSMUST00000205461 796 ntTSL 5 BASIC21.59■■□□□ 1.05
H2afb3S4R1G7 Foxk2-201ENSMUST00000106113 5029 ntAPPRIS P1 TSL 1 (best) BASIC21.59■■□□□ 1.05
H2afb3S4R1G7 Stard10-202ENSMUST00000163799 1723 ntTSL 1 (best) BASIC21.58■■□□□ 1.05
H2afb3S4R1G7 Rcor2-201ENSMUST00000066646 2801 ntAPPRIS P1 TSL 1 (best) BASIC21.58■■□□□ 1.05
H2afb3S4R1G7 1700028N14Rik-201ENSMUST00000139621 747 ntTSL 1 (best) BASIC21.58■■□□□ 1.05
H2afb3S4R1G7 Fam120aos-201ENSMUST00000180775 1780 ntTSL 1 (best) BASIC21.58■■□□□ 1.04
H2afb3S4R1G7 E2f5-201ENSMUST00000029069 1779 ntAPPRIS P2 TSL 1 (best) BASIC21.58■■□□□ 1.04
H2afb3S4R1G7 Cadps-201ENSMUST00000067491 5421 ntAPPRIS P4 TSL 1 (best) BASIC21.57■■□□□ 1.04
H2afb3S4R1G7 2210008F06Rik-201ENSMUST00000180805 1082 ntTSL 1 (best) BASIC21.56■■□□□ 1.04
H2afb3S4R1G7 Srp9-201ENSMUST00000027792 1367 ntAPPRIS P1 TSL 1 (best) BASIC21.56■■□□□ 1.04
H2afb3S4R1G7 Zbtb12-201ENSMUST00000052778 1858 ntAPPRIS P1 TSL 1 (best) BASIC21.56■■□□□ 1.04
H2afb3S4R1G7 Det1-201ENSMUST00000032839 2269 ntAPPRIS P1 TSL 1 (best) BASIC21.55■■□□□ 1.04
H2afb3S4R1G7 Igfbp3-202ENSMUST00000135887 1709 ntAPPRIS P1 TSL 1 (best) BASIC21.55■■□□□ 1.04
H2afb3S4R1G7 Pcgf5-201ENSMUST00000062389 1566 ntTSL 5 BASIC21.55■■□□□ 1.04
H2afb3S4R1G7 Ier5l-201ENSMUST00000065134 2683 ntAPPRIS P1 BASIC21.55■■□□□ 1.04
H2afb3S4R1G7 Ctnnd2-201ENSMUST00000081728 5944 ntAPPRIS P2 TSL 1 (best) BASIC21.55■■□□□ 1.04
H2afb3S4R1G7 Sugct-202ENSMUST00000220514 1351 ntTSL 1 (best) BASIC21.54■■□□□ 1.04
H2afb3S4R1G7 Eif2ak3-204ENSMUST00000162950 927 ntTSL 1 (best) BASIC21.54■■□□□ 1.04
H2afb3S4R1G7 Hsd17b11-201ENSMUST00000031251 1825 ntAPPRIS P1 TSL 1 (best) BASIC21.54■■□□□ 1.04
H2afb3S4R1G7 Fbxo6-201ENSMUST00000030858 1346 ntAPPRIS P1 TSL 1 (best) BASIC21.54■■□□□ 1.04
H2afb3S4R1G7 C1ql1-201ENSMUST00000057849 1473 ntAPPRIS P1 TSL 1 (best) BASIC21.53■■□□□ 1.04
H2afb3S4R1G7 Kcmf1-204ENSMUST00000204598 1743 ntTSL 1 (best) BASIC21.53■■□□□ 1.04
H2afb3S4R1G7 Lrfn1-203ENSMUST00000189877 1852 ntAPPRIS P3 TSL 5 BASIC21.52■■□□□ 1.03
H2afb3S4R1G7 Maz-201ENSMUST00000032916 2347 ntTSL 1 (best) BASIC21.51■■□□□ 1.03
H2afb3S4R1G7 Rab40c-209ENSMUST00000179998 2456 ntAPPRIS P1 TSL 5 BASIC21.51■■□□□ 1.03
H2afb3S4R1G7 Crim1-201ENSMUST00000112498 5995 ntAPPRIS P1 TSL 1 (best) BASIC21.51■■□□□ 1.03
H2afb3S4R1G7 Yrdc-201ENSMUST00000102628 1634 ntAPPRIS P1 TSL 1 (best) BASIC21.51■■□□□ 1.03
H2afb3S4R1G7 Eed-201ENSMUST00000107234 2067 ntAPPRIS P1 TSL 1 (best) BASIC21.5■■□□□ 1.03
H2afb3S4R1G7 Bin1-202ENSMUST00000091967 2118 ntAPPRIS ALT2 TSL 1 (best) BASIC21.5■■□□□ 1.03
H2afb3S4R1G7 Lmo2-202ENSMUST00000111140 1706 ntTSL 1 (best) BASIC21.49■■□□□ 1.03
H2afb3S4R1G7 Rcan1-202ENSMUST00000060005 2324 ntTSL 1 (best) BASIC21.48■■□□□ 1.03
H2afb3S4R1G7 Isoc1-201ENSMUST00000025503 2563 ntAPPRIS P1 TSL 1 (best) BASIC21.48■■□□□ 1.03
H2afb3S4R1G7 Irak1-207ENSMUST00000114360 2441 ntAPPRIS ALT2 TSL 1 (best) BASIC21.48■■□□□ 1.03
H2afb3S4R1G7 Pcgf5-210ENSMUST00000225411 1626 ntAPPRIS P5 BASIC21.47■■□□□ 1.03
H2afb3S4R1G7 Gm10762-201ENSMUST00000099385 1133 ntAPPRIS P1 BASIC21.47■■□□□ 1.03
H2afb3S4R1G7 Cacfd1-204ENSMUST00000114006 1648 ntAPPRIS P1 TSL 1 (best) BASIC21.47■■□□□ 1.03
H2afb3S4R1G7 Amigo1-203ENSMUST00000106659 1360 ntTSL 1 (best) BASIC21.44■■□□□ 1.02
H2afb3S4R1G7 Sos2-201ENSMUST00000035773 5607 ntAPPRIS P2 TSL 5 BASIC21.43■■□□□ 1.02
H2afb3S4R1G7 Pcf11-205ENSMUST00000208255 1720 ntBASIC21.43■■□□□ 1.02
H2afb3S4R1G7 Kcna7-201ENSMUST00000107774 2182 ntAPPRIS P1 TSL 1 (best) BASIC21.43■■□□□ 1.02
H2afb3S4R1G7 Hrk-201ENSMUST00000054836 5382 ntAPPRIS P1 TSL 1 (best) BASIC21.42■■□□□ 1.02
H2afb3S4R1G7 Wdr34-201ENSMUST00000113711 1814 ntAPPRIS P1 TSL 1 (best) BASIC21.42■■□□□ 1.02
H2afb3S4R1G7 St6galnac6-204ENSMUST00000095045 2536 ntAPPRIS ALT1 TSL 1 (best) BASIC21.42■■□□□ 1.02
H2afb3S4R1G7 Kansl2-201ENSMUST00000023727 2311 ntAPPRIS ALT2 TSL 5 BASIC21.41■■□□□ 1.02
H2afb3S4R1G7 Cdc42bpg-201ENSMUST00000025681 5995 ntAPPRIS P1 TSL 5 BASIC21.41■■□□□ 1.02
H2afb3S4R1G7 Tm6sf1-201ENSMUST00000041890 2226 ntAPPRIS P1 TSL 1 (best) BASIC21.41■■□□□ 1.02
H2afb3S4R1G7 Camsap1-212ENSMUST00000183461 5090 ntAPPRIS ALT2 TSL 5 BASIC21.4■■□□□ 1.02
H2afb3S4R1G7 Clptm1l-201ENSMUST00000022102 2340 ntAPPRIS P1 TSL 1 (best) BASIC21.4■■□□□ 1.02
H2afb3S4R1G7 Twist1-201ENSMUST00000049089 1628 ntAPPRIS P1 TSL 1 (best) BASIC21.4■■□□□ 1.02
H2afb3S4R1G7 Mnx1-201ENSMUST00000001608 2018 ntAPPRIS ALT2 TSL 5 BASIC21.39■■□□□ 1.01
H2afb3S4R1G7 Cpsf4-201ENSMUST00000070487 1606 ntTSL 1 (best) BASIC21.38■■□□□ 1.01
H2afb3S4R1G7 1700016A09Rik-201ENSMUST00000192004 835 ntBASIC21.38■■□□□ 1.01
H2afb3S4R1G7 Ryk-201ENSMUST00000035142 2852 ntAPPRIS ALT2 TSL 1 (best) BASIC21.38■■□□□ 1.01
H2afb3S4R1G7 March2-205ENSMUST00000173015 1418 ntTSL 3 BASIC21.38■■□□□ 1.01
H2afb3S4R1G7 Dedd-201ENSMUST00000064950 1618 ntAPPRIS P1 TSL 1 (best) BASIC21.37■■□□□ 1.01
H2afb3S4R1G7 Rnf19b-201ENSMUST00000030584 2414 ntAPPRIS ALT2 TSL 5 BASIC21.37■■□□□ 1.01
H2afb3S4R1G7 Panx2-202ENSMUST00000161372 2314 ntTSL 1 (best) BASIC21.37■■□□□ 1.01
H2afb3S4R1G7 Il3ra-201ENSMUST00000090591 1614 ntAPPRIS P2 TSL 1 (best) BASIC21.37■■□□□ 1.01
H2afb3S4R1G7 Itpka-201ENSMUST00000028758 1818 ntAPPRIS P1 TSL 1 (best) BASIC21.36■■□□□ 1.01
H2afb3S4R1G7 Smurf1-202ENSMUST00000100461 2725 ntAPPRIS ALT1 TSL 1 (best) BASIC21.36■■□□□ 1.01
H2afb3S4R1G7 Yars2-201ENSMUST00000059955 1574 ntAPPRIS P1 TSL 1 (best) BASIC21.36■■□□□ 1.01
H2afb3S4R1G7 Bcl7b-201ENSMUST00000031692 1758 ntAPPRIS P2 TSL 1 (best) BASIC21.36■■□□□ 1.01
H2afb3S4R1G7 Fgf20-201ENSMUST00000034014 1476 ntAPPRIS P1 TSL 1 (best) BASIC21.35■■□□□ 1.01
H2afb3S4R1G7 Prr3-201ENSMUST00000055454 2727 ntAPPRIS P3 TSL 1 (best) BASIC21.35■■□□□ 1.01
H2afb3S4R1G7 Eid2-201ENSMUST00000059596 1392 ntAPPRIS P1 BASIC21.35■■□□□ 1.01
H2afb3S4R1G7 Gm43863-201ENSMUST00000203822 1192 ntBASIC21.34■■□□□ 1.01
H2afb3S4R1G7 Zfp131-205ENSMUST00000223812 663 ntBASIC21.34■■□□□ 1.01
H2afb3S4R1G7 Dazap1-202ENSMUST00000105361 1537 ntAPPRIS ALT1 TSL 1 (best) BASIC21.34■■□□□ 1.01
H2afb3S4R1G7 E2f5-202ENSMUST00000165922 1751 ntAPPRIS ALT2 TSL 5 BASIC21.33■■□□□ 1.01
H2afb3S4R1G7 Pom121-201ENSMUST00000111171 5580 ntAPPRIS P1 TSL 1 (best) BASIC21.33■■□□□ 1.01
H2afb3S4R1G7 Ssbp4-205ENSMUST00000210369 1828 ntTSL 2 BASIC21.33■■□□□ 1.01
H2afb3S4R1G7 Tsg101-201ENSMUST00000014546 1949 ntAPPRIS P1 TSL 1 (best) BASIC21.32■■□□□ 1
H2afb3S4R1G7 Syndig1l-204ENSMUST00000222422 1758 ntAPPRIS P1 TSL 1 (best) BASIC21.32■■□□□ 1
H2afb3S4R1G7 Heca-201ENSMUST00000037879 5098 ntAPPRIS P1 TSL 1 (best) BASIC21.31■■□□□ 1
H2afb3S4R1G7 Zfp422-201ENSMUST00000057540 2375 ntAPPRIS P1 TSL 1 (best) BASIC21.31■■□□□ 1
Retrieved 100 of 76,532 protein–RNA pairs in 28.4 ms