Protein–RNA interactions for Protein: Q9CQE8

RTRAF, RNA transcription, translation and transport factor protein, mousemouse

Predictions only

Length 244 aa.

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Protein RNA Prediction (catRAPID) Interaction (Experimental data)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
RTRAFQ9CQE8 Hoxc13-201ENSMUST00000001700 2461 ntAPPRIS P1 TSL 1 (best) BASIC19.66■□□□□ 0.74
RTRAFQ9CQE8 St7-202ENSMUST00000052113 2046 ntAPPRIS P1 TSL 1 (best) BASIC19.66■□□□□ 0.74
RTRAFQ9CQE8 Tnfsf12-202ENSMUST00000181810 1435 ntAPPRIS P1 TSL 1 (best) BASIC19.65■□□□□ 0.74
RTRAFQ9CQE8 Agap2-202ENSMUST00000217941 5573 ntAPPRIS ALT2 TSL 1 (best) BASIC19.65■□□□□ 0.74
RTRAFQ9CQE8 Aspscr1-201ENSMUST00000026135 1820 ntAPPRIS P1 TSL 1 (best) BASIC19.65■□□□□ 0.74
RTRAFQ9CQE8 Snta1-202ENSMUST00000109728 2131 ntAPPRIS P2 TSL 1 (best) BASIC19.64■□□□□ 0.73
RTRAFQ9CQE8 Snta1-201ENSMUST00000028991 2125 ntAPPRIS ALT2 TSL 1 (best) BASIC19.64■□□□□ 0.73
RTRAFQ9CQE8 Pou3f3-201ENSMUST00000054883 7409 ntAPPRIS P1 BASIC19.63■□□□□ 0.73
RTRAFQ9CQE8 Cnot6-203ENSMUST00000145353 5736 ntAPPRIS P1 TSL 5 BASIC19.63■□□□□ 0.73
RTRAFQ9CQE8 Mnx1-201ENSMUST00000001608 2018 ntAPPRIS ALT2 TSL 5 BASIC19.63■□□□□ 0.73
RTRAFQ9CQE8 Eif4e2-203ENSMUST00000113230 1569 ntTSL 1 (best) BASIC19.62■□□□□ 0.73
RTRAFQ9CQE8 Ksr1-201ENSMUST00000018478 5495 ntAPPRIS P1 TSL 5 BASIC19.62■□□□□ 0.73
RTRAFQ9CQE8 Stat5b-201ENSMUST00000004143 5062 ntAPPRIS P1 TSL 1 (best) BASIC19.61■□□□□ 0.73
RTRAFQ9CQE8 Crebl2-202ENSMUST00000111937 612 ntTSL 3 BASIC19.61■□□□□ 0.73
RTRAFQ9CQE8 Brd1-203ENSMUST00000109381 4886 ntTSL 5 BASIC19.61■□□□□ 0.73
RTRAFQ9CQE8 Ralgapa1-204ENSMUST00000219432 6631 ntTSL 5 BASIC19.61■□□□□ 0.73
RTRAFQ9CQE8 B4galt6-201ENSMUST00000070080 5808 ntAPPRIS P1 TSL 1 (best) BASIC19.6■□□□□ 0.73
RTRAFQ9CQE8 Otud5-205ENSMUST00000115668 2543 ntTSL 1 (best) BASIC19.6■□□□□ 0.73
RTRAFQ9CQE8 B3gat3-201ENSMUST00000096243 1601 ntAPPRIS P1 TSL 1 (best) BASIC19.6■□□□□ 0.73
RTRAFQ9CQE8 Dpy19l1-206ENSMUST00000170356 4715 ntAPPRIS P1 TSL 5 BASIC19.6■□□□□ 0.73
RTRAFQ9CQE8 Cdan1-201ENSMUST00000110700 5996 ntAPPRIS ALT2 TSL 5 BASIC19.6■□□□□ 0.73
RTRAFQ9CQE8 Neurl4-202ENSMUST00000108617 4892 ntAPPRIS ALT2 TSL 5 BASIC19.59■□□□□ 0.73
RTRAFQ9CQE8 Cdc14b-207ENSMUST00000221634 1953 ntAPPRIS ALT2 TSL 1 (best) BASIC19.59■□□□□ 0.73
RTRAFQ9CQE8 Galnt12-202ENSMUST00000107744 2077 ntTSL 1 (best) BASIC19.59■□□□□ 0.73
RTRAFQ9CQE8 Sept11-208ENSMUST00000202308 1792 ntAPPRIS ALT1 TSL 5 BASIC19.59■□□□□ 0.73
RTRAFQ9CQE8 Tm6sf1-201ENSMUST00000041890 2226 ntAPPRIS P1 TSL 1 (best) BASIC19.59■□□□□ 0.73
RTRAFQ9CQE8 Nans-201ENSMUST00000030018 2179 ntAPPRIS P1 TSL 1 (best) BASIC19.58■□□□□ 0.72
RTRAFQ9CQE8 Thap4-206ENSMUST00000190116 5558 ntAPPRIS P1 TSL 1 (best) BASIC19.57■□□□□ 0.72
RTRAFQ9CQE8 Eya2-202ENSMUST00000088132 2447 ntAPPRIS P1 TSL 1 (best) BASIC19.57■□□□□ 0.72
RTRAFQ9CQE8 Fus-201ENSMUST00000077609 1831 ntAPPRIS ALT2 TSL 1 (best) BASIC19.57■□□□□ 0.72
RTRAFQ9CQE8 Ei24-202ENSMUST00000163192 2309 ntAPPRIS P1 TSL 1 (best) BASIC19.57■□□□□ 0.72
RTRAFQ9CQE8 Nisch-222ENSMUST00000172142 2780 ntAPPRIS ALT2 TSL 1 (best) BASIC19.56■□□□□ 0.72
RTRAFQ9CQE8 Ilk-201ENSMUST00000033182 1795 ntAPPRIS P1 TSL 1 (best) BASIC19.56■□□□□ 0.72
RTRAFQ9CQE8 Dapk3-202ENSMUST00000178422 1730 ntAPPRIS P1 TSL 1 (best) BASIC19.56■□□□□ 0.72
RTRAFQ9CQE8 Tmem260-208ENSMUST00000226400 2281 ntAPPRIS ALT2 BASIC19.55■□□□□ 0.72
RTRAFQ9CQE8 Gabbr2-201ENSMUST00000107749 5750 ntAPPRIS P1 TSL 2 BASIC19.55■□□□□ 0.72
RTRAFQ9CQE8 Hp1bp3-205ENSMUST00000105827 5155 ntAPPRIS ALT2 TSL 5 BASIC19.55■□□□□ 0.72
RTRAFQ9CQE8 Cntln-204ENSMUST00000169371 5365 ntAPPRIS ALT2 TSL 5 BASIC19.54■□□□□ 0.72
RTRAFQ9CQE8 Paip1-203ENSMUST00000126957 1731 ntTSL 5 BASIC19.54■□□□□ 0.72
RTRAFQ9CQE8 Mapk14-205ENSMUST00000114758 1581 ntTSL 1 (best) BASIC19.53■□□□□ 0.72
RTRAFQ9CQE8 Fam220a-205ENSMUST00000169329 2331 ntAPPRIS P1 TSL 1 (best) BASIC19.53■□□□□ 0.72
RTRAFQ9CQE8 Eml4-201ENSMUST00000049503 5109 ntAPPRIS P3 TSL 1 (best) BASIC19.53■□□□□ 0.72
RTRAFQ9CQE8 Znrf3-201ENSMUST00000109867 6311 ntAPPRIS P3 TSL 5 BASIC19.53■□□□□ 0.72
RTRAFQ9CQE8 Mpp6-209ENSMUST00000204545 2418 ntAPPRIS P1 TSL 5 BASIC19.53■□□□□ 0.72
RTRAFQ9CQE8 Fam102b-202ENSMUST00000171143 5702 ntAPPRIS P1 TSL 1 (best) BASIC19.53■□□□□ 0.72
RTRAFQ9CQE8 Kmt2b-202ENSMUST00000108154 8454 ntAPPRIS P2 TSL 1 (best) BASIC19.52■□□□□ 0.72
RTRAFQ9CQE8 Dazap1-201ENSMUST00000092305 1994 ntAPPRIS ALT1 TSL 1 (best) BASIC19.52■□□□□ 0.71
RTRAFQ9CQE8 Fam91a1-201ENSMUST00000037270 5560 ntAPPRIS P1 TSL 1 (best) BASIC19.51■□□□□ 0.71
RTRAFQ9CQE8 Adgrb1-201ENSMUST00000042035 6228 ntAPPRIS P1 TSL 1 (best) BASIC19.51■□□□□ 0.71
RTRAFQ9CQE8 Gm15688-201ENSMUST00000161394 2418 ntTSL 1 (best) BASIC19.51■□□□□ 0.71
RTRAFQ9CQE8 Mpp6-202ENSMUST00000036236 2161 ntAPPRIS P1 TSL 1 (best) BASIC19.5■□□□□ 0.71
RTRAFQ9CQE8 Mrps7-201ENSMUST00000058109 1962 ntAPPRIS P1 TSL 1 (best) BASIC19.5■□□□□ 0.71
RTRAFQ9CQE8 Rnf149-201ENSMUST00000062525 2492 ntAPPRIS P1 TSL 1 (best) BASIC19.49■□□□□ 0.71
RTRAFQ9CQE8 Rnf111-204ENSMUST00000213647 4961 ntAPPRIS ALT2 TSL 1 (best) BASIC19.49■□□□□ 0.71
RTRAFQ9CQE8 Pdia5-201ENSMUST00000023550 1808 ntAPPRIS P1 TSL 1 (best) BASIC19.48■□□□□ 0.71
RTRAFQ9CQE8 Sox3-201ENSMUST00000135107 2065 ntAPPRIS P1 BASIC19.48■□□□□ 0.71
RTRAFQ9CQE8 Fam69b-201ENSMUST00000074240 1622 ntAPPRIS P1 TSL 1 (best) BASIC19.48■□□□□ 0.71
RTRAFQ9CQE8 E030037K01Rik-201ENSMUST00000180928 1756 ntBASIC19.48■□□□□ 0.71
RTRAFQ9CQE8 Psme4-201ENSMUST00000041231 6491 ntAPPRIS P1 TSL 1 (best) BASIC19.48■□□□□ 0.71
RTRAFQ9CQE8 Dhrs13-203ENSMUST00000122342 1791 ntTSL 1 (best) BASIC19.47■□□□□ 0.71
RTRAFQ9CQE8 E2f5-201ENSMUST00000029069 1779 ntAPPRIS P2 TSL 1 (best) BASIC19.47■□□□□ 0.71
RTRAFQ9CQE8 Tnfsfm13-203ENSMUST00000180587 2235 ntAPPRIS P3 TSL 2 BASIC19.47■□□□□ 0.71
RTRAFQ9CQE8 Fzd9-201ENSMUST00000062572 2293 ntAPPRIS P1 BASIC19.46■□□□□ 0.71
RTRAFQ9CQE8 Rnf115-201ENSMUST00000029740 2209 ntAPPRIS P1 TSL 1 (best) BASIC19.46■□□□□ 0.71
RTRAFQ9CQE8 Gsx2-202ENSMUST00000160104 1182 ntTSL 1 (best) BASIC19.46■□□□□ 0.71
RTRAFQ9CQE8 Tmem240-201ENSMUST00000127188 1308 ntAPPRIS P1 TSL 2 BASIC19.46■□□□□ 0.71
RTRAFQ9CQE8 Hnrnpd-202ENSMUST00000072750 1537 ntAPPRIS ALT2 TSL 3 BASIC19.46■□□□□ 0.71
RTRAFQ9CQE8 Zbtb12-201ENSMUST00000052778 1858 ntAPPRIS P1 TSL 1 (best) BASIC19.45■□□□□ 0.7
RTRAFQ9CQE8 Rtn4r-201ENSMUST00000059589 1938 ntAPPRIS P1 TSL 1 (best) BASIC19.45■□□□□ 0.7
RTRAFQ9CQE8 Lmo2-201ENSMUST00000111139 1434 ntTSL 5 BASIC19.45■□□□□ 0.7
RTRAFQ9CQE8 Paqr3-202ENSMUST00000112968 1875 ntTSL 1 (best) BASIC19.45■□□□□ 0.7
RTRAFQ9CQE8 Tmcc1-202ENSMUST00000088896 5838 ntAPPRIS P2 TSL 1 (best) BASIC19.45■□□□□ 0.7
RTRAFQ9CQE8 AC124392.1-201ENSMUST00000225172 5324 ntBASIC19.44■□□□□ 0.7
RTRAFQ9CQE8 Taf4-204ENSMUST00000227325 4380 ntAPPRIS ALT2 BASIC19.44■□□□□ 0.7
RTRAFQ9CQE8 Fam241a-201ENSMUST00000057198 1607 ntTSL 1 (best) BASIC19.44■□□□□ 0.7
RTRAFQ9CQE8 Magi2-201ENSMUST00000088516 4843 ntAPPRIS P2 TSL 5 BASIC19.44■□□□□ 0.7
RTRAFQ9CQE8 Gm30346-201ENSMUST00000218641 1699 ntBASIC19.43■□□□□ 0.7
RTRAFQ9CQE8 Abhd17a-201ENSMUST00000003436 1468 ntAPPRIS P1 TSL 1 (best) BASIC19.43■□□□□ 0.7
RTRAFQ9CQE8 Gkap1-201ENSMUST00000091579 1523 ntAPPRIS P1 TSL 1 (best) BASIC19.43■□□□□ 0.7
RTRAFQ9CQE8 Cenpv-201ENSMUST00000018653 1032 ntAPPRIS P1 TSL 1 (best) BASIC19.43■□□□□ 0.7
RTRAFQ9CQE8 Cpe-201ENSMUST00000048967 2117 ntAPPRIS P1 TSL 1 (best) BASIC19.43■□□□□ 0.7
RTRAFQ9CQE8 Cd320-201ENSMUST00000002379 2209 ntAPPRIS P3 TSL 1 (best) BASIC19.42■□□□□ 0.7
RTRAFQ9CQE8 5031425E22Rik-201ENSMUST00000101522 2110 ntBASIC19.42■□□□□ 0.7
RTRAFQ9CQE8 Det1-201ENSMUST00000032839 2269 ntAPPRIS P1 TSL 1 (best) BASIC19.41■□□□□ 0.7
RTRAFQ9CQE8 A730013G03Rik-202ENSMUST00000195012 2097 ntBASIC19.41■□□□□ 0.7
RTRAFQ9CQE8 Dcaf15-202ENSMUST00000210279 2199 ntAPPRIS P1 TSL 1 (best) BASIC19.41■□□□□ 0.7
RTRAFQ9CQE8 Dirc2-201ENSMUST00000023554 5395 ntAPPRIS P1 TSL 1 (best) BASIC19.41■□□□□ 0.7
RTRAFQ9CQE8 Slc22a17-201ENSMUST00000050772 2290 ntTSL 1 (best) BASIC19.41■□□□□ 0.7
RTRAFQ9CQE8 Pds5a-209ENSMUST00000201948 8934 ntAPPRIS P1 TSL 5 BASIC19.4■□□□□ 0.7
RTRAFQ9CQE8 Hs2st1-201ENSMUST00000043325 6177 ntAPPRIS P1 TSL 1 (best) BASIC19.4■□□□□ 0.7
RTRAFQ9CQE8 Pura-201ENSMUST00000051301 3145 ntAPPRIS P1 TSL 1 (best) BASIC19.39■□□□□ 0.69
RTRAFQ9CQE8 Fam136a-201ENSMUST00000071492 1643 ntAPPRIS P1 TSL 1 (best) BASIC19.39■□□□□ 0.69
RTRAFQ9CQE8 Akt1s1-202ENSMUST00000107880 1757 ntAPPRIS P3 TSL 1 (best) BASIC19.39■□□□□ 0.69
RTRAFQ9CQE8 Lpcat4-201ENSMUST00000028554 2275 ntAPPRIS P1 TSL 1 (best) BASIC19.39■□□□□ 0.69
RTRAFQ9CQE8 Eif4ebp1-201ENSMUST00000033880 1997 ntAPPRIS P1 TSL 1 (best) BASIC19.38■□□□□ 0.69
RTRAFQ9CQE8 Ammecr1-201ENSMUST00000041317 5437 ntAPPRIS P1 TSL 1 (best) BASIC19.38■□□□□ 0.69
RTRAFQ9CQE8 Dapk3-201ENSMUST00000047665 1676 ntAPPRIS P1 TSL 5 BASIC19.38■□□□□ 0.69
RTRAFQ9CQE8 Mfn1-201ENSMUST00000091257 4562 ntAPPRIS P1 TSL 1 (best) BASIC19.37■□□□□ 0.69
RTRAFQ9CQE8 Stau2-210ENSMUST00000149320 2214 ntTSL 5 BASIC19.37■□□□□ 0.69
RTRAFQ9CQE8 Mxi1-202ENSMUST00000025998 4996 ntAPPRIS P1 TSL 1 (best) BASIC19.36■□□□□ 0.69
Retrieved 100 of 76,532 protein–RNA pairs in 10.6 ms