Protein–RNA interactions for Protein: Q8IWA6

CCDC60, Coiled-coil domain-containing protein 60, humanhuman

Predicted RBP Predictions only

Length 550 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
CCDC60Q8IWA6 MAPK12-201ENST00000215659 1918 ntAPPRIS P1 TSL 1 (best) BASIC29.59■■■□□ 2.33
CCDC60Q8IWA6 MAFA-201ENST00000333480 2347 ntAPPRIS P1 BASIC29.59■■■□□ 2.33
CCDC60Q8IWA6 CCDC149-203ENST00000502801 1079 ntTSL 1 (best) BASIC29.58■■■□□ 2.33
CCDC60Q8IWA6 UBE2A-207ENST00000628549 934 ntTSL 2 BASIC29.58■■■□□ 2.33
CCDC60Q8IWA6 GSC-201ENST00000238558 1264 ntAPPRIS P1 TSL 1 (best) BASIC29.57■■■□□ 2.32
CCDC60Q8IWA6 AC116407.1-201ENST00000398832 1599 ntTSL 2 BASIC29.56■■■□□ 2.32
CCDC60Q8IWA6 DNLZ-201ENST00000371738 724 ntAPPRIS P1 TSL 1 (best) BASIC29.56■■■□□ 2.32
CCDC60Q8IWA6 CERS2-201ENST00000271688 2544 ntAPPRIS P1 TSL 5 BASIC29.55■■■□□ 2.32
CCDC60Q8IWA6 AC096888.1-201ENST00000487097 565 ntTSL 4 BASIC29.55■■■□□ 2.32
CCDC60Q8IWA6 PPP3CC-204ENST00000518852 1598 ntTSL 2 BASIC29.55■■■□□ 2.32
CCDC60Q8IWA6 TPRA1-201ENST00000296210 1725 ntTSL 1 (best) BASIC29.54■■■□□ 2.32
CCDC60Q8IWA6 REPIN1-204ENST00000466559 1022 ntTSL 1 (best) BASIC29.53■■■□□ 2.32
CCDC60Q8IWA6 GAL3ST1-204ENST00000402369 1712 ntAPPRIS P1 TSL 3 BASIC29.52■■■□□ 2.32
CCDC60Q8IWA6 HINT2-201ENST00000259667 628 ntAPPRIS P1 TSL 1 (best) BASIC29.52■■■□□ 2.32
CCDC60Q8IWA6 PDCD2-209ENST00000542896 1082 ntTSL 2 BASIC29.52■■■□□ 2.32
CCDC60Q8IWA6 PVT1-219ENST00000523427 938 ntTSL 3 BASIC29.51■■■□□ 2.31
CCDC60Q8IWA6 AP002884.3-203ENST00000419895 1711 ntTSL 2 BASIC29.51■■■□□ 2.31
CCDC60Q8IWA6 SHC2-201ENST00000264554 2494 ntAPPRIS P1 TSL 1 (best) BASIC29.5■■■□□ 2.31
CCDC60Q8IWA6 RP9P-201ENST00000381639 1303 ntTSL 1 (best) BASIC29.49■■■□□ 2.31
CCDC60Q8IWA6 PGM5-201ENST00000396392 1782 ntTSL 1 (best) BASIC29.49■■■□□ 2.31
CCDC60Q8IWA6 POU3F1-201ENST00000373012 2184 ntAPPRIS P1 BASIC29.49■■■□□ 2.31
CCDC60Q8IWA6 PELI3-203ENST00000524466 1671 ntTSL 1 (best) BASIC29.48■■■□□ 2.31
CCDC60Q8IWA6 AC010864.1-201ENST00000609407 1511 ntBASIC29.48■■■□□ 2.31
CCDC60Q8IWA6 DPF1-204ENST00000416611 2341 ntTSL 5 BASIC29.48■■■□□ 2.31
CCDC60Q8IWA6 U2AF2-206ENST00000590551 1104 ntTSL 3 BASIC29.47■■■□□ 2.31
CCDC60Q8IWA6 HS3ST6-201ENST00000454677 1273 ntAPPRIS P1 TSL 1 (best) BASIC29.46■■■□□ 2.31
CCDC60Q8IWA6 MTMR1-214ENST00000542156 1227 ntTSL 1 (best) BASIC29.46■■■□□ 2.31
CCDC60Q8IWA6 CHPT1-205ENST00000549872 2001 ntAPPRIS ALT2 TSL 5 BASIC29.45■■■□□ 2.31
CCDC60Q8IWA6 RAB26-201ENST00000210187 1675 ntAPPRIS P1 TSL 1 (best) BASIC29.44■■■□□ 2.3
CCDC60Q8IWA6 MRPL9-201ENST00000368829 882 ntAPPRIS ALT2 TSL 2 BASIC29.44■■■□□ 2.3
CCDC60Q8IWA6 AL589765.4-201ENST00000512280 382 ntTSL 3 BASIC29.44■■■□□ 2.3
CCDC60Q8IWA6 VEGFA-226ENST00000611736 1239 ntTSL 1 (best) BASIC29.44■■■□□ 2.3
CCDC60Q8IWA6 AL451007.3-201ENST00000640271 588 ntAPPRIS P1 BASIC29.44■■■□□ 2.3
CCDC60Q8IWA6 STUB1-205ENST00000565677 1560 ntTSL 1 (best) BASIC29.43■■■□□ 2.3
CCDC60Q8IWA6 HOXD8-201ENST00000313173 1917 ntAPPRIS P3 TSL 2 BASIC29.42■■■□□ 2.3
CCDC60Q8IWA6 IFNGR2-201ENST00000290219 2221 ntAPPRIS P3 TSL 1 (best) BASIC29.41■■■□□ 2.3
CCDC60Q8IWA6 PLEKHJ1-201ENST00000326631 1206 ntAPPRIS P1 TSL 1 (best) BASIC29.41■■■□□ 2.3
CCDC60Q8IWA6 PRSS41-201ENST00000399677 1127 ntAPPRIS P1 TSL 5 BASIC29.41■■■□□ 2.3
CCDC60Q8IWA6 LAPTM4B-203ENST00000521545 915 ntAPPRIS P1 TSL 1 (best) BASIC29.4■■■□□ 2.3
CCDC60Q8IWA6 HNRNPAB-204ENST00000504898 1785 ntAPPRIS P4 TSL 1 (best) BASIC29.39■■■□□ 2.3
CCDC60Q8IWA6 CARS2-201ENST00000257347 1879 ntAPPRIS P1 TSL 1 (best) BASIC29.38■■■□□ 2.29
CCDC60Q8IWA6 DDN-AS1-203ENST00000552284 934 ntTSL 3 BASIC29.37■■■□□ 2.29
CCDC60Q8IWA6 TAZ-215ENST00000612460 1793 ntAPPRIS P1 TSL 1 (best) BASIC29.36■■■□□ 2.29
CCDC60Q8IWA6 AL135925.1-201ENST00000605920 1701 ntBASIC29.36■■■□□ 2.29
CCDC60Q8IWA6 ABHD17A-202ENST00000292577 1757 ntAPPRIS P1 TSL 1 (best) BASIC29.35■■■□□ 2.29
CCDC60Q8IWA6 MAD2L2-207ENST00000376692 1118 ntAPPRIS P1 TSL 1 (best) BASIC29.35■■■□□ 2.29
CCDC60Q8IWA6 MBOAT7-202ENST00000338624 2076 ntTSL 2 BASIC29.35■■■□□ 2.29
CCDC60Q8IWA6 U2AF1L5-201ENST00000610664 897 ntAPPRIS P5 TSL 1 (best) BASIC29.34■■■□□ 2.29
CCDC60Q8IWA6 AC013394.1-201ENST00000629685 808 ntAPPRIS P1 TSL 5 BASIC29.34■■■□□ 2.29
CCDC60Q8IWA6 EI24-212ENST00000615917 1407 ntTSL 2 BASIC29.34■■■□□ 2.29
CCDC60Q8IWA6 QDPR-201ENST00000281243 1648 ntAPPRIS P1 TSL 1 (best) BASIC29.32■■■□□ 2.28
CCDC60Q8IWA6 AC004837.3-201ENST00000420748 565 ntTSL 4 BASIC29.32■■■□□ 2.28
CCDC60Q8IWA6 AC187653.1-201ENST00000506382 702 ntAPPRIS P1 TSL 5 BASIC29.31■■■□□ 2.28
CCDC60Q8IWA6 LFNG-201ENST00000222725 2377 ntAPPRIS P4 TSL 5 BASIC29.3■■■□□ 2.28
CCDC60Q8IWA6 GXYLT1-201ENST00000280876 1937 ntAPPRIS ALT2 TSL 1 (best) BASIC29.3■■■□□ 2.28
CCDC60Q8IWA6 EBAG9-202ENST00000395785 1467 ntAPPRIS P1 TSL 1 (best) BASIC29.29■■■□□ 2.28
CCDC60Q8IWA6 AGAP3-211ENST00000473312 2039 ntTSL 1 (best) BASIC29.29■■■□□ 2.28
CCDC60Q8IWA6 C14orf80-202ENST00000334656 1358 ntAPPRIS ALT2 TSL 2 BASIC29.28■■■□□ 2.28
CCDC60Q8IWA6 SH3GL3-202ENST00000427482 1806 ntAPPRIS P1 TSL 1 (best) BASIC29.28■■■□□ 2.28
CCDC60Q8IWA6 FSD1L-204ENST00000469022 1836 ntTSL 1 (best) BASIC29.27■■■□□ 2.28
CCDC60Q8IWA6 LINC01971-201ENST00000617888 1048 ntBASIC29.27■■■□□ 2.28
CCDC60Q8IWA6 ANGPTL6-201ENST00000253109 1900 ntAPPRIS P1 TSL 1 (best) BASIC29.27■■■□□ 2.28
CCDC60Q8IWA6 ATRNL1-207ENST00000527407 1583 ntTSL 5 BASIC29.26■■■□□ 2.28
CCDC60Q8IWA6 H2AFV-204ENST00000350771 687 ntTSL 2 BASIC29.26■■■□□ 2.27
CCDC60Q8IWA6 MBP-237ENST00000579129 1052 ntTSL 5 BASIC29.26■■■□□ 2.27
CCDC60Q8IWA6 TPRG1L-202ENST00000378344 2414 ntAPPRIS P1 TSL 2 BASIC29.26■■■□□ 2.27
CCDC60Q8IWA6 SMDT1-201ENST00000331479 1567 ntAPPRIS P1 TSL 1 (best) BASIC29.26■■■□□ 2.27
CCDC60Q8IWA6 CBLN1-201ENST00000219197 2435 ntAPPRIS P1 TSL 1 (best) BASIC29.25■■■□□ 2.27
CCDC60Q8IWA6 ENKD1-201ENST00000243878 1579 ntAPPRIS P1 TSL 1 (best) BASIC29.25■■■□□ 2.27
CCDC60Q8IWA6 HAUS7-201ENST00000370210 1593 ntAPPRIS ALT2 TSL 2 BASIC29.25■■■□□ 2.27
CCDC60Q8IWA6 RAMP2-AS1-202ENST00000589716 1985 ntTSL 5 BASIC29.24■■■□□ 2.27
CCDC60Q8IWA6 PHF23-201ENST00000320316 2037 ntAPPRIS P1 TSL 1 (best) BASIC29.24■■■□□ 2.27
CCDC60Q8IWA6 HLA-V-202ENST00000446817 847 ntBASIC29.24■■■□□ 2.27
CCDC60Q8IWA6 TCAM1P-201ENST00000463377 452 ntTSL 3 BASIC29.24■■■□□ 2.27
CCDC60Q8IWA6 WNT5A-AS1-201ENST00000469484 500 ntTSL 3 BASIC29.24■■■□□ 2.27
CCDC60Q8IWA6 TOMM40-201ENST00000252487 1707 ntAPPRIS P2 TSL 1 (best) BASIC29.23■■■□□ 2.27
CCDC60Q8IWA6 TOMM40-202ENST00000405636 1709 ntAPPRIS P2 TSL 1 (best) BASIC29.23■■■□□ 2.27
CCDC60Q8IWA6 RNF166-209ENST00000567844 633 ntTSL 5 BASIC29.23■■■□□ 2.27
CCDC60Q8IWA6 DUX4L11-201ENST00000611504 1267 ntBASIC29.23■■■□□ 2.27
CCDC60Q8IWA6 DUX4L12-201ENST00000614593 1267 ntBASIC29.23■■■□□ 2.27
CCDC60Q8IWA6 DUX4L14-201ENST00000621227 1267 ntBASIC29.23■■■□□ 2.27
CCDC60Q8IWA6 BARX1-201ENST00000253968 1533 ntAPPRIS P1 TSL 1 (best) BASIC29.22■■■□□ 2.27
CCDC60Q8IWA6 CAPNS1-211ENST00000590874 926 ntTSL 5 BASIC29.22■■■□□ 2.27
CCDC60Q8IWA6 CALM3-209ENST00000597743 577 ntTSL 4 BASIC29.21■■■□□ 2.27
CCDC60Q8IWA6 ST7-208ENST00000393451 2110 ntAPPRIS P1 TSL 1 (best) BASIC29.21■■■□□ 2.27
CCDC60Q8IWA6 FAM189B-210ENST00000621094 1335 ntTSL 1 (best) BASIC29.2■■■□□ 2.27
CCDC60Q8IWA6 GNAI2-202ENST00000313601 2464 ntAPPRIS P1 TSL 1 (best) BASIC29.2■■■□□ 2.27
CCDC60Q8IWA6 MACF1-219ENST00000484793 834 ntTSL 2 BASIC29.2■■■□□ 2.26
CCDC60Q8IWA6 TRIOBP-205ENST00000407319 2125 ntAPPRIS P3 TSL 1 (best) BASIC29.2■■■□□ 2.26
CCDC60Q8IWA6 RASSF8-202ENST00000381352 2320 ntTSL 1 (best) BASIC29.19■■■□□ 2.26
CCDC60Q8IWA6 FSD1L-208ENST00000495708 1906 ntTSL 1 (best) BASIC29.19■■■□□ 2.26
CCDC60Q8IWA6 TMEM158-201ENST00000503771 1813 ntAPPRIS P1 BASIC29.17■■■□□ 2.26
CCDC60Q8IWA6 LDB1-202ENST00000425280 2089 ntTSL 5 BASIC29.17■■■□□ 2.26
CCDC60Q8IWA6 AC127502.1-201ENST00000399971 1502 ntBASIC29.17■■■□□ 2.26
CCDC60Q8IWA6 RPS2-202ENST00000526522 924 ntTSL 2 BASIC29.17■■■□□ 2.26
CCDC60Q8IWA6 COQ2-202ENST00000311469 1641 ntAPPRIS P2 TSL 1 (best) BASIC29.16■■■□□ 2.26
CCDC60Q8IWA6 GRK6-206ENST00000507633 1660 ntTSL 5 BASIC29.16■■■□□ 2.26
CCDC60Q8IWA6 ACOT12-204ENST00000513751 612 ntTSL 1 (best) BASIC29.16■■■□□ 2.26
CCDC60Q8IWA6 JMJD8-202ENST00000562111 823 ntTSL 2 BASIC29.16■■■□□ 2.26
CCDC60Q8IWA6 CR559946.2-201ENST00000623684 991 ntBASIC29.15■■■□□ 2.26
Retrieved 100 of 98,524 protein–RNA pairs in 62.4 ms