Protein–RNA interactions for Protein: Q8BHH8

Clrn3, Clarin-3, mousemouse

Predictions only

Length 226 aa.

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Protein RNA Prediction (catRAPID) Interaction (Experimental data)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
Clrn3Q8BHH8 Twist1-201ENSMUST00000049089 1628 ntAPPRIS P1 TSL 1 (best) BASIC22.66■■□□□ 1.22
Clrn3Q8BHH8 Lpcat4-201ENSMUST00000028554 2275 ntAPPRIS P1 TSL 1 (best) BASIC22.65■■□□□ 1.22
Clrn3Q8BHH8 Stard3nl-210ENSMUST00000222869 1030 ntTSL 5 BASIC22.65■■□□□ 1.22
Clrn3Q8BHH8 Sugct-202ENSMUST00000220514 1351 ntTSL 1 (best) BASIC22.64■■□□□ 1.22
Clrn3Q8BHH8 Zfp787-201ENSMUST00000094870 1897 ntAPPRIS P1 TSL 1 (best) BASIC22.64■■□□□ 1.21
Clrn3Q8BHH8 Hexdc-201ENSMUST00000038831 2378 ntAPPRIS ALT2 TSL 5 BASIC22.62■■□□□ 1.21
Clrn3Q8BHH8 Kansl2-201ENSMUST00000023727 2311 ntAPPRIS ALT2 TSL 5 BASIC22.62■■□□□ 1.21
Clrn3Q8BHH8 Dpf1-204ENSMUST00000108231 2040 ntTSL 5 BASIC22.62■■□□□ 1.21
Clrn3Q8BHH8 Amigo1-203ENSMUST00000106659 1360 ntTSL 1 (best) BASIC22.62■■□□□ 1.21
Clrn3Q8BHH8 Eid2-201ENSMUST00000059596 1392 ntAPPRIS P1 BASIC22.62■■□□□ 1.21
Clrn3Q8BHH8 Cdk2ap1-201ENSMUST00000031341 1315 ntAPPRIS P2 TSL 1 (best) BASIC22.61■■□□□ 1.21
Clrn3Q8BHH8 Cpsf4-201ENSMUST00000070487 1606 ntTSL 1 (best) BASIC22.61■■□□□ 1.21
Clrn3Q8BHH8 Mpp6-203ENSMUST00000166318 2222 ntTSL 1 (best) BASIC22.61■■□□□ 1.21
Clrn3Q8BHH8 Fam220a-206ENSMUST00000196487 2278 ntAPPRIS P1 TSL 1 (best) BASIC22.6■■□□□ 1.21
Clrn3Q8BHH8 Pcgf5-201ENSMUST00000062389 1566 ntTSL 5 BASIC22.6■■□□□ 1.21
Clrn3Q8BHH8 Gm17494-201ENSMUST00000072769 1800 ntTSL 1 (best) BASIC22.6■■□□□ 1.21
Clrn3Q8BHH8 A530058N18Rik-204ENSMUST00000141209 709 ntTSL 5 BASIC22.6■■□□□ 1.21
Clrn3Q8BHH8 Cetn4-201ENSMUST00000071400 1808 ntTSL 5 BASIC22.59■■□□□ 1.21
Clrn3Q8BHH8 2310050C09Rik-201ENSMUST00000163439 1078 ntAPPRIS P1 TSL 2 BASIC22.59■■□□□ 1.21
Clrn3Q8BHH8 AC157572.2-201ENSMUST00000226970 908 ntBASIC22.59■■□□□ 1.21
Clrn3Q8BHH8 A730013G03Rik-202ENSMUST00000195012 2097 ntBASIC22.59■■□□□ 1.21
Clrn3Q8BHH8 C1ql1-201ENSMUST00000057849 1473 ntAPPRIS P1 TSL 1 (best) BASIC22.58■■□□□ 1.2
Clrn3Q8BHH8 Dlg1-203ENSMUST00000100001 4711 ntAPPRIS ALT2 TSL 5 BASIC22.58■■□□□ 1.2
Clrn3Q8BHH8 Dtnb-211ENSMUST00000173240 2218 ntTSL 5 BASIC22.56■■□□□ 1.2
Clrn3Q8BHH8 Dazap1-202ENSMUST00000105361 1537 ntAPPRIS ALT1 TSL 1 (best) BASIC22.56■■□□□ 1.2
Clrn3Q8BHH8 Mcat-201ENSMUST00000061882 1893 ntAPPRIS P1 TSL 1 (best) BASIC22.56■■□□□ 1.2
Clrn3Q8BHH8 Suds3-202ENSMUST00000166397 1694 ntAPPRIS ALT2 TSL 1 (best) BASIC22.55■■□□□ 1.2
Clrn3Q8BHH8 Zfp358-201ENSMUST00000061508 1999 ntAPPRIS P1 TSL 1 (best) BASIC22.55■■□□□ 1.2
Clrn3Q8BHH8 Clk2-201ENSMUST00000090927 2128 ntAPPRIS ALT1 TSL 1 (best) BASIC22.55■■□□□ 1.2
Clrn3Q8BHH8 Dtnbp1-201ENSMUST00000072329 1362 ntAPPRIS P2 TSL 1 (best) BASIC22.54■■□□□ 1.2
Clrn3Q8BHH8 Mthfd2l-203ENSMUST00000202781 688 ntTSL 1 (best) BASIC22.54■■□□□ 1.2
Clrn3Q8BHH8 Dyrk1a-202ENSMUST00000119878 5759 ntAPPRIS P1 TSL 5 BASIC22.54■■□□□ 1.2
Clrn3Q8BHH8 4921531C22Rik-201ENSMUST00000150145 1905 ntTSL 1 (best) BASIC22.53■■□□□ 1.2
Clrn3Q8BHH8 Dleu2-206ENSMUST00000182537 318 ntTSL 2 BASIC22.52■■□□□ 1.2
Clrn3Q8BHH8 Stau2-210ENSMUST00000149320 2214 ntTSL 5 BASIC22.51■■□□□ 1.19
Clrn3Q8BHH8 Gpr12-201ENSMUST00000036211 2219 ntAPPRIS P1 TSL 1 (best) BASIC22.51■■□□□ 1.19
Clrn3Q8BHH8 Dlx6os2-201ENSMUST00000178206 1354 ntBASIC22.5■■□□□ 1.19
Clrn3Q8BHH8 Fam220a-204ENSMUST00000119488 2202 ntTSL 1 (best) BASIC22.5■■□□□ 1.19
Clrn3Q8BHH8 Fam220a-209ENSMUST00000200267 2202 ntAPPRIS P1 TSL 1 (best) BASIC22.5■■□□□ 1.19
Clrn3Q8BHH8 Fgf20-201ENSMUST00000034014 1476 ntAPPRIS P1 TSL 1 (best) BASIC22.5■■□□□ 1.19
Clrn3Q8BHH8 Agap3-201ENSMUST00000024123 3207 ntAPPRIS P1 TSL 1 (best) BASIC22.5■■□□□ 1.19
Clrn3Q8BHH8 Cnnm3-201ENSMUST00000001166 5193 ntAPPRIS P4 TSL 1 (best) BASIC22.49■■□□□ 1.19
Clrn3Q8BHH8 Atp5a1-202ENSMUST00000114748 2674 ntTSL 1 (best) BASIC22.48■■□□□ 1.19
Clrn3Q8BHH8 Rab40c-209ENSMUST00000179998 2456 ntAPPRIS P1 TSL 5 BASIC22.48■■□□□ 1.19
Clrn3Q8BHH8 C2cd4d-201ENSMUST00000169433 1321 ntAPPRIS P1 TSL 3 BASIC22.47■■□□□ 1.19
Clrn3Q8BHH8 Crip2-201ENSMUST00000084882 1439 ntAPPRIS P1 TSL 1 (best) BASIC22.47■■□□□ 1.19
Clrn3Q8BHH8 Galnt12-202ENSMUST00000107744 2077 ntTSL 1 (best) BASIC22.46■■□□□ 1.19
Clrn3Q8BHH8 Cdv3-205ENSMUST00000189896 1023 ntAPPRIS ALT2 TSL 1 (best) BASIC22.46■■□□□ 1.19
Clrn3Q8BHH8 Tor1a-201ENSMUST00000028200 1401 ntAPPRIS P1 TSL 1 (best) BASIC22.46■■□□□ 1.19
Clrn3Q8BHH8 Zmynd12-201ENSMUST00000094819 1464 ntAPPRIS P1 TSL 1 (best) BASIC22.45■■□□□ 1.18
Clrn3Q8BHH8 Ildr2-205ENSMUST00000193860 2320 ntTSL 1 (best) BASIC22.45■■□□□ 1.18
Clrn3Q8BHH8 Yrdc-201ENSMUST00000102628 1634 ntAPPRIS P1 TSL 1 (best) BASIC22.44■■□□□ 1.18
Clrn3Q8BHH8 Stard10-202ENSMUST00000163799 1723 ntTSL 1 (best) BASIC22.44■■□□□ 1.18
Clrn3Q8BHH8 Fezf2-202ENSMUST00000224023 1917 ntBASIC22.44■■□□□ 1.18
Clrn3Q8BHH8 Clk2-203ENSMUST00000121931 2112 ntAPPRIS ALT1 TSL 5 BASIC22.43■■□□□ 1.18
Clrn3Q8BHH8 Hsd17b11-201ENSMUST00000031251 1825 ntAPPRIS P1 TSL 1 (best) BASIC22.43■■□□□ 1.18
Clrn3Q8BHH8 Slc16a8-201ENSMUST00000039752 1806 ntAPPRIS P1 TSL 1 (best) BASIC22.43■■□□□ 1.18
Clrn3Q8BHH8 Smarcc2-205ENSMUST00000218228 603 ntTSL 5 BASIC22.43■■□□□ 1.18
Clrn3Q8BHH8 E030037K01Rik-201ENSMUST00000180928 1756 ntBASIC22.43■■□□□ 1.18
Clrn3Q8BHH8 Pax1-201ENSMUST00000109968 2643 ntAPPRIS P1 TSL 1 (best) BASIC22.43■■□□□ 1.18
Clrn3Q8BHH8 Nrtn-201ENSMUST00000044752 1023 ntAPPRIS P1 TSL 1 (best) BASIC22.42■■□□□ 1.18
Clrn3Q8BHH8 Dapk3-201ENSMUST00000047665 1676 ntAPPRIS P1 TSL 5 BASIC22.42■■□□□ 1.18
Clrn3Q8BHH8 Sec63-201ENSMUST00000019937 6032 ntAPPRIS P1 TSL 1 (best) BASIC22.41■■□□□ 1.18
Clrn3Q8BHH8 Tspan33-201ENSMUST00000046750 1994 ntAPPRIS P3 TSL 1 (best) BASIC22.41■■□□□ 1.18
Clrn3Q8BHH8 Pm20d2-201ENSMUST00000098181 1445 ntAPPRIS P1 TSL 5 BASIC22.41■■□□□ 1.18
Clrn3Q8BHH8 Kcnc3-206ENSMUST00000208651 2728 ntAPPRIS ALT2 TSL 5 BASIC22.41■■□□□ 1.18
Clrn3Q8BHH8 Gm527-203ENSMUST00000220993 1090 ntTSL 5 BASIC22.41■■□□□ 1.18
Clrn3Q8BHH8 Gm26508-201ENSMUST00000181285 1516 ntTSL 5 BASIC22.41■■□□□ 1.18
Clrn3Q8BHH8 AC153890.1-201ENSMUST00000220021 2469 ntBASIC22.4■■□□□ 1.18
Clrn3Q8BHH8 2410017I17Rik-202ENSMUST00000090537 2053 ntTSL 2 BASIC22.4■■□□□ 1.18
Clrn3Q8BHH8 Mat2b-201ENSMUST00000040167 1949 ntAPPRIS P1 TSL 1 (best) BASIC22.4■■□□□ 1.18
Clrn3Q8BHH8 Tnfsfm13-201ENSMUST00000108649 1049 ntAPPRIS ALT2 TSL 5 BASIC22.4■■□□□ 1.18
Clrn3Q8BHH8 C1qtnf5-201ENSMUST00000114815 1215 ntAPPRIS P1 TSL 1 (best) BASIC22.4■■□□□ 1.18
Clrn3Q8BHH8 Mxra7-202ENSMUST00000047715 757 ntAPPRIS ALT2 TSL 1 (best) BASIC22.4■■□□□ 1.18
Clrn3Q8BHH8 4930577N17Rik-201ENSMUST00000139771 1625 ntBASIC22.39■■□□□ 1.18
Clrn3Q8BHH8 Snta1-202ENSMUST00000109728 2131 ntAPPRIS P2 TSL 1 (best) BASIC22.39■■□□□ 1.18
Clrn3Q8BHH8 Snta1-201ENSMUST00000028991 2125 ntAPPRIS ALT2 TSL 1 (best) BASIC22.39■■□□□ 1.18
Clrn3Q8BHH8 Msi2-202ENSMUST00000107908 695 ntTSL 5 BASIC22.39■■□□□ 1.17
Clrn3Q8BHH8 Slc35a3-202ENSMUST00000120120 1791 ntAPPRIS P1 TSL 1 (best) BASIC22.38■■□□□ 1.17
Clrn3Q8BHH8 Fam120aos-201ENSMUST00000180775 1780 ntTSL 1 (best) BASIC22.38■■□□□ 1.17
Clrn3Q8BHH8 Syndig1l-204ENSMUST00000222422 1758 ntAPPRIS P1 TSL 1 (best) BASIC22.38■■□□□ 1.17
Clrn3Q8BHH8 Gm20503-201ENSMUST00000174664 1294 ntAPPRIS P1 TSL 5 BASIC22.38■■□□□ 1.17
Clrn3Q8BHH8 Dut-202ENSMUST00000082122 1020 ntTSL 1 (best) BASIC22.38■■□□□ 1.17
Clrn3Q8BHH8 Eif4ebp1-201ENSMUST00000033880 1997 ntAPPRIS P1 TSL 1 (best) BASIC22.38■■□□□ 1.17
Clrn3Q8BHH8 Kcmf1-204ENSMUST00000204598 1743 ntTSL 1 (best) BASIC22.37■■□□□ 1.17
Clrn3Q8BHH8 Amer2-203ENSMUST00000225247 2662 ntBASIC22.37■■□□□ 1.17
Clrn3Q8BHH8 Caap1-201ENSMUST00000030313 2107 ntAPPRIS P1 TSL 1 (best) BASIC22.36■■□□□ 1.17
Clrn3Q8BHH8 Rras2-201ENSMUST00000069449 2275 ntAPPRIS P1 TSL 1 (best) BASIC22.36■■□□□ 1.17
Clrn3Q8BHH8 Kcna7-201ENSMUST00000107774 2182 ntAPPRIS P1 TSL 1 (best) BASIC22.35■■□□□ 1.17
Clrn3Q8BHH8 Rgs7-206ENSMUST00000194555 2431 ntAPPRIS ALT2 TSL 1 (best) BASIC22.35■■□□□ 1.17
Clrn3Q8BHH8 Gtpbp2-201ENSMUST00000024748 2966 ntAPPRIS P1 TSL 1 (best) BASIC22.35■■□□□ 1.17
Clrn3Q8BHH8 Rcor2-201ENSMUST00000066646 2801 ntAPPRIS P1 TSL 1 (best) BASIC22.35■■□□□ 1.17
Clrn3Q8BHH8 Fam3c-201ENSMUST00000081288 1487 ntTSL 1 (best) BASIC22.34■■□□□ 1.17
Clrn3Q8BHH8 Maz-204ENSMUST00000206254 2282 ntTSL 5 BASIC22.34■■□□□ 1.17
Clrn3Q8BHH8 Kansl2-202ENSMUST00000116400 2110 ntAPPRIS P2 TSL 1 (best) BASIC22.34■■□□□ 1.17
Clrn3Q8BHH8 Stard10-203ENSMUST00000164479 1375 ntAPPRIS P1 TSL 1 (best) BASIC22.34■■□□□ 1.17
Clrn3Q8BHH8 Phf23-205ENSMUST00000135814 2214 ntTSL 1 (best) BASIC22.34■■□□□ 1.17
Clrn3Q8BHH8 Marveld2-202ENSMUST00000163163 2187 ntTSL 1 (best) BASIC22.33■■□□□ 1.17
Clrn3Q8BHH8 Panx2-202ENSMUST00000161372 2314 ntTSL 1 (best) BASIC22.33■■□□□ 1.17
Clrn3Q8BHH8 Gng13-201ENSMUST00000115108 347 ntAPPRIS P1 TSL 1 (best) BASIC22.33■■□□□ 1.17
Retrieved 100 of 76,532 protein–RNA pairs in 92 ms