Protein–RNA interactions for Protein: Q86TM3

DDX53, Probable ATP-dependent RNA helicase DDX53, humanhuman

Known RBP Predictions only

Length 631 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
DDX53Q86TM3 BATF3-201ENST00000243440 980 ntAPPRIS P1 TSL 1 (best) BASIC28.3■■■□□ 2.12
DDX53Q86TM3 FKBP1A-210ENST00000614856 562 ntTSL 2 BASIC28.3■■■□□ 2.12
DDX53Q86TM3 FTCD-202ENST00000397743 1834 ntTSL 1 (best) BASIC28.29■■■□□ 2.12
DDX53Q86TM3 NPTXR-202ENST00000640136 1503 ntAPPRIS P2 TSL 1 (best) BASIC28.29■■■□□ 2.12
DDX53Q86TM3 SLC35D2-203ENST00000375259 1361 ntTSL 1 (best) BASIC28.29■■■□□ 2.12
DDX53Q86TM3 PLEKHG6-206ENST00000536531 1683 ntTSL 1 (best) BASIC28.28■■■□□ 2.12
DDX53Q86TM3 EI24-212ENST00000615917 1407 ntTSL 2 BASIC28.27■■■□□ 2.12
DDX53Q86TM3 OLFM2-201ENST00000264833 2019 ntAPPRIS P1 TSL 1 (best) BASIC28.27■■■□□ 2.12
DDX53Q86TM3 PARD6A-201ENST00000219255 1248 ntAPPRIS P3 TSL 1 (best) BASIC28.27■■■□□ 2.12
DDX53Q86TM3 H2AFV-204ENST00000350771 687 ntTSL 2 BASIC28.27■■■□□ 2.12
DDX53Q86TM3 GRPEL2-204ENST00000513661 546 ntTSL 2 BASIC28.27■■■□□ 2.12
DDX53Q86TM3 CNIH2-203ENST00000528852 1524 ntAPPRIS ALT1 TSL 1 (best) BASIC28.27■■■□□ 2.12
DDX53Q86TM3 MYLIP-202ENST00000356840 1666 ntAPPRIS P1 TSL 1 (best) BASIC28.26■■■□□ 2.12
DDX53Q86TM3 CLDND1-226ENST00000513287 999 ntAPPRIS P1 TSL 2 BASIC28.26■■■□□ 2.11
DDX53Q86TM3 C16orf95-205ENST00000567970 1031 ntAPPRIS ALT2 TSL 5 BASIC28.26■■■□□ 2.11
DDX53Q86TM3 R3HDM4-208ENST00000626716 138 ntTSL 5 BASIC28.26■■■□□ 2.11
DDX53Q86TM3 NOG-201ENST00000332822 1892 ntAPPRIS P1 BASIC28.25■■■□□ 2.11
DDX53Q86TM3 MSRB2-201ENST00000376510 1803 ntAPPRIS P1 TSL 1 (best) BASIC28.25■■■□□ 2.11
DDX53Q86TM3 FAAP20-202ENST00000378546 729 ntAPPRIS P1 TSL 1 (best) BASIC28.25■■■□□ 2.11
DDX53Q86TM3 SIAH1-203ENST00000394725 2147 ntAPPRIS P3 TSL 1 (best) BASIC28.25■■■□□ 2.11
DDX53Q86TM3 EBPL-201ENST00000242827 914 ntAPPRIS P1 TSL 1 (best) BASIC28.23■■■□□ 2.11
DDX53Q86TM3 ING2-201ENST00000302327 1189 ntAPPRIS P1 TSL 1 (best) BASIC28.23■■■□□ 2.11
DDX53Q86TM3 GLRX5-201ENST00000331334 1564 ntAPPRIS P1 TSL 1 (best) BASIC28.22■■■□□ 2.11
DDX53Q86TM3 DUX4L13-201ENST00000554103 1267 ntBASIC28.22■■■□□ 2.11
DDX53Q86TM3 DUX4L15-201ENST00000611059 1267 ntBASIC28.22■■■□□ 2.11
DDX53Q86TM3 DUX4L23-201ENST00000615195 1269 ntBASIC28.22■■■□□ 2.11
DDX53Q86TM3 DUX4L24-201ENST00000617576 1269 ntBASIC28.22■■■□□ 2.11
DDX53Q86TM3 DUX4L22-201ENST00000618238 1269 ntBASIC28.22■■■□□ 2.11
DDX53Q86TM3 DUX4L20-201ENST00000619712 1269 ntBASIC28.22■■■□□ 2.11
DDX53Q86TM3 DUX4L21-201ENST00000622058 1269 ntBASIC28.22■■■□□ 2.11
DDX53Q86TM3 DUX4L10-201ENST00000622460 1267 ntBASIC28.22■■■□□ 2.11
DDX53Q86TM3 DUX4L25-201ENST00000624915 1269 ntBASIC28.22■■■□□ 2.11
DDX53Q86TM3 RANBP1-202ENST00000402752 1132 ntAPPRIS ALT1 TSL 1 (best) BASIC28.21■■■□□ 2.11
DDX53Q86TM3 GLRB-203ENST00000509282 1757 ntAPPRIS P1 TSL 1 (best) BASIC28.2■■■□□ 2.11
DDX53Q86TM3 AP002884.3-203ENST00000419895 1711 ntTSL 2 BASIC28.2■■■□□ 2.1
DDX53Q86TM3 HSD17B1P1-201ENST00000590052 955 ntBASIC28.19■■■□□ 2.1
DDX53Q86TM3 JMJD8-216ENST00000609261 1901 ntAPPRIS ALT2 TSL 1 (best) BASIC28.19■■■□□ 2.1
DDX53Q86TM3 ABHD12-201ENST00000339157 2117 ntAPPRIS P1 TSL 2 BASIC28.19■■■□□ 2.1
DDX53Q86TM3 XKR6-201ENST00000297303 1550 ntTSL 1 (best) BASIC28.19■■■□□ 2.1
DDX53Q86TM3 VEGFA-208ENST00000417285 1081 ntAPPRIS ALT2 TSL 1 (best) BASIC28.18■■■□□ 2.1
DDX53Q86TM3 RRAD-202ENST00000420652 1476 ntAPPRIS P1 TSL 1 (best) BASIC28.18■■■□□ 2.1
DDX53Q86TM3 BCL7B-201ENST00000223368 1975 ntAPPRIS P1 TSL 1 (best) BASIC28.18■■■□□ 2.1
DDX53Q86TM3 AVEN-201ENST00000306730 1605 ntAPPRIS P1 TSL 1 (best) BASIC28.18■■■□□ 2.1
DDX53Q86TM3 NOP53-201ENST00000246802 1528 ntAPPRIS P1 TSL 1 (best) BASIC28.17■■■□□ 2.1
DDX53Q86TM3 C11orf95-204ENST00000546282 390 ntTSL 3 BASIC28.16■■■□□ 2.1
DDX53Q86TM3 RHOC-202ENST00000339083 1418 ntAPPRIS P1 TSL 1 (best) BASIC28.16■■■□□ 2.1
DDX53Q86TM3 CAAP1-205ENST00000520187 773 ntTSL 5 BASIC28.14■■■□□ 2.1
DDX53Q86TM3 TCEA2-204ENST00000395053 1733 ntTSL 1 (best) BASIC28.14■■■□□ 2.1
DDX53Q86TM3 GUSB-202ENST00000421103 1742 ntTSL 2 BASIC28.14■■■□□ 2.1
DDX53Q86TM3 HES6-205ENST00000409356 528 ntTSL 2 BASIC28.12■■■□□ 2.09
DDX53Q86TM3 METRNL-202ENST00000570778 967 ntTSL 5 BASIC28.12■■■□□ 2.09
DDX53Q86TM3 CHML-204ENST00000638121 920 ntTSL 2 BASIC28.12■■■□□ 2.09
DDX53Q86TM3 AL161658.1-201ENST00000623641 1967 ntBASIC28.11■■■□□ 2.09
DDX53Q86TM3 GATA6-202ENST00000581694 2057 ntAPPRIS P1 TSL 1 (best) BASIC28.11■■■□□ 2.09
DDX53Q86TM3 HES7-202ENST00000541682 1674 ntAPPRIS ALT1 TSL 1 (best) BASIC28.11■■■□□ 2.09
DDX53Q86TM3 AP000251.1-201ENST00000433071 822 ntTSL 1 (best) BASIC28.11■■■□□ 2.09
DDX53Q86TM3 STARD10-220ENST00000545082 1085 ntTSL 3 BASIC28.11■■■□□ 2.09
DDX53Q86TM3 MSX1-201ENST00000382723 1939 ntAPPRIS P1 TSL 1 (best) BASIC28.1■■■□□ 2.09
DDX53Q86TM3 DTNBP1-212ENST00000622898 1305 ntTSL 1 (best) BASIC28.1■■■□□ 2.09
DDX53Q86TM3 CSPG5-205ENST00000610462 2073 ntTSL 5 BASIC28.09■■■□□ 2.09
DDX53Q86TM3 U2AF1-201ENST00000291552 962 ntAPPRIS P3 TSL 1 (best) BASIC28.09■■■□□ 2.09
DDX53Q86TM3 U2AF1L5-202ENST00000619610 813 ntAPPRIS ALT2 TSL 1 (best) BASIC28.09■■■□□ 2.09
DDX53Q86TM3 ABHD17AP3-201ENST00000503096 1137 ntBASIC28.08■■■□□ 2.09
DDX53Q86TM3 MLST8-203ENST00000397124 1691 ntAPPRIS P3 TSL 5 BASIC28.07■■■□□ 2.08
DDX53Q86TM3 TMEM229A-201ENST00000455783 2108 ntAPPRIS P1 BASIC28.07■■■□□ 2.08
DDX53Q86TM3 TPRA1-201ENST00000296210 1725 ntTSL 1 (best) BASIC28.06■■■□□ 2.08
DDX53Q86TM3 WHRN-203ENST00000374057 1718 ntTSL 2 BASIC28.06■■■□□ 2.08
DDX53Q86TM3 UCK1-201ENST00000372208 2063 ntTSL 1 (best) BASIC28.06■■■□□ 2.08
DDX53Q86TM3 BRD4-212ENST00000630599 726 ntTSL 2 BASIC28.06■■■□□ 2.08
DDX53Q86TM3 RUNX2-203ENST00000371436 1588 ntAPPRIS ALT2 TSL 5 BASIC28.06■■■□□ 2.08
DDX53Q86TM3 C14orf80-202ENST00000334656 1358 ntAPPRIS ALT2 TSL 2 BASIC28.05■■■□□ 2.08
DDX53Q86TM3 CISD3-204ENST00000613478 2074 ntAPPRIS P1 TSL 2 BASIC28.05■■■□□ 2.08
DDX53Q86TM3 SMDT1-201ENST00000331479 1567 ntAPPRIS P1 TSL 1 (best) BASIC28.03■■■□□ 2.08
DDX53Q86TM3 ARL6IP4-211ENST00000454885 1318 ntAPPRIS ALT2 TSL 1 (best) BASIC28.03■■■□□ 2.08
DDX53Q86TM3 EIF5A-208ENST00000573542 1089 ntAPPRIS P1 TSL 2 BASIC28.02■■■□□ 2.08
DDX53Q86TM3 LINC02323-201ENST00000559946 1603 ntTSL 3 BASIC28.02■■■□□ 2.08
DDX53Q86TM3 PPP3CC-204ENST00000518852 1598 ntTSL 2 BASIC28.02■■■□□ 2.08
DDX53Q86TM3 FAM189B-210ENST00000621094 1335 ntTSL 1 (best) BASIC28.01■■■□□ 2.07
DDX53Q86TM3 PPP4R4-202ENST00000328839 876 ntTSL 1 (best) BASIC28.01■■■□□ 2.07
DDX53Q86TM3 AC231981.1-201ENST00000450917 974 ntTSL 3 BASIC28.01■■■□□ 2.07
DDX53Q86TM3 HNRNPAB-204ENST00000504898 1785 ntAPPRIS P4 TSL 1 (best) BASIC28.01■■■□□ 2.07
DDX53Q86TM3 BCL7B-202ENST00000411832 1458 ntTSL 2 BASIC28.01■■■□□ 2.07
DDX53Q86TM3 AP000911.3-201ENST00000526377 1130 ntTSL 3 BASIC28■■■□□ 2.07
DDX53Q86TM3 SULT4A1-201ENST00000330884 2468 ntAPPRIS P1 TSL 1 (best) BASIC27.99■■■□□ 2.07
DDX53Q86TM3 TMEM251-202ENST00000415050 1303 ntTSL 2 BASIC27.99■■■□□ 2.07
DDX53Q86TM3 PI4KAP1-202ENST00000611748 1906 ntTSL 1 (best) BASIC27.99■■■□□ 2.07
DDX53Q86TM3 MAZ-208ENST00000563402 1461 ntTSL 5 BASIC27.99■■■□□ 2.07
DDX53Q86TM3 MAZ-210ENST00000566906 1455 ntTSL 5 BASIC27.99■■■□□ 2.07
DDX53Q86TM3 LINC00273-201ENST00000539813 1452 ntBASIC27.98■■■□□ 2.07
DDX53Q86TM3 KHDRBS3-201ENST00000355849 1977 ntAPPRIS P1 TSL 1 (best) BASIC27.98■■■□□ 2.07
DDX53Q86TM3 PDXP-201ENST00000215904 2010 ntAPPRIS P1 TSL 1 (best) BASIC27.97■■■□□ 2.07
DDX53Q86TM3 HOXB3-210ENST00000489475 1845 ntTSL 2 BASIC27.97■■■□□ 2.07
DDX53Q86TM3 GKAP1-203ENST00000376371 1778 ntAPPRIS P1 TSL 1 (best) BASIC27.97■■■□□ 2.07
DDX53Q86TM3 MRPL51-201ENST00000229238 1234 ntAPPRIS P1 TSL 1 (best) BASIC27.97■■■□□ 2.07
DDX53Q86TM3 CTXN1-201ENST00000318978 1274 ntAPPRIS P1 TSL 1 (best) BASIC27.97■■■□□ 2.07
DDX53Q86TM3 AC010864.1-201ENST00000609407 1511 ntBASIC27.97■■■□□ 2.07
DDX53Q86TM3 ZDHHC16-201ENST00000345745 1519 ntTSL 1 (best) BASIC27.96■■■□□ 2.07
DDX53Q86TM3 GRASP-201ENST00000293662 1933 ntAPPRIS P1 TSL 1 (best) BASIC27.96■■■□□ 2.07
DDX53Q86TM3 LRRC61-202ENST00000359623 1877 ntAPPRIS P1 TSL 2 BASIC27.95■■■□□ 2.07
DDX53Q86TM3 GAL3ST1-204ENST00000402369 1712 ntAPPRIS P1 TSL 3 BASIC27.95■■■□□ 2.06
Retrieved 100 of 98,524 protein–RNA pairs in 33.8 ms