Protein–RNA interactions for Protein: Q6Q899

Ddx58, Probable ATP-dependent RNA helicase DDX58, mousemouse

Predictions only

Length 926 aa.

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Protein RNA Prediction (catRAPID) Interaction (Experimental data)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
Ddx58Q6Q899 Kras-207ENSMUST00000203147 817 ntTSL 5 BASIC30.69■■■□□ 2.5
Ddx58Q6Q899 Gm9887-201ENSMUST00000053451 624 ntAPPRIS P1 BASIC30.68■■■□□ 2.5
Ddx58Q6Q899 Fam241a-201ENSMUST00000057198 1607 ntTSL 1 (best) BASIC30.68■■■□□ 2.5
Ddx58Q6Q899 Glrx2-205ENSMUST00000145571 758 ntTSL 2 BASIC30.67■■■□□ 2.5
Ddx58Q6Q899 Gm11529-201ENSMUST00000153012 639 ntTSL 1 (best) BASIC30.67■■■□□ 2.5
Ddx58Q6Q899 Slc16a8-201ENSMUST00000039752 1806 ntAPPRIS P1 TSL 1 (best) BASIC30.67■■■□□ 2.5
Ddx58Q6Q899 Gna13-202ENSMUST00000106702 914 ntTSL 1 (best) BASIC30.66■■■□□ 2.5
Ddx58Q6Q899 Gm2018-201ENSMUST00000140754 478 ntTSL 2 BASIC30.66■■■□□ 2.5
Ddx58Q6Q899 Raly-201ENSMUST00000029120 1802 ntAPPRIS ALT2 TSL 5 BASIC30.66■■■□□ 2.5
Ddx58Q6Q899 Serpinb6a-201ENSMUST00000017188 1504 ntTSL 1 (best) BASIC30.64■■■□□ 2.5
Ddx58Q6Q899 Pdss1-201ENSMUST00000053729 1642 ntAPPRIS P1 TSL 1 (best) BASIC30.63■■■□□ 2.49
Ddx58Q6Q899 Pfdn2-202ENSMUST00000135941 1735 ntAPPRIS P1 TSL 1 (best) BASIC30.61■■■□□ 2.49
Ddx58Q6Q899 Traf4-201ENSMUST00000017530 2078 ntAPPRIS P1 TSL 1 (best) BASIC30.61■■■□□ 2.49
Ddx58Q6Q899 Phlda3-201ENSMUST00000038945 1435 ntAPPRIS P1 TSL 1 (best) BASIC30.61■■■□□ 2.49
Ddx58Q6Q899 Guk1-204ENSMUST00000170202 1078 ntAPPRIS P1 TSL 1 (best) BASIC30.6■■■□□ 2.49
Ddx58Q6Q899 Fam3c-201ENSMUST00000081288 1487 ntTSL 1 (best) BASIC30.6■■■□□ 2.49
Ddx58Q6Q899 Stradb-202ENSMUST00000114296 1348 ntTSL 1 (best) BASIC30.58■■■□□ 2.49
Ddx58Q6Q899 Iscu-203ENSMUST00000112312 1116 ntTSL 5 BASIC30.58■■■□□ 2.49
Ddx58Q6Q899 Ankrd60-202ENSMUST00000119453 1084 ntAPPRIS P2 TSL 2 BASIC30.57■■■□□ 2.48
Ddx58Q6Q899 AC117232.3-201ENSMUST00000217817 338 ntTSL 2 BASIC30.57■■■□□ 2.48
Ddx58Q6Q899 Smarcad1-211ENSMUST00000204696 734 ntTSL 1 (best) BASIC30.56■■■□□ 2.48
Ddx58Q6Q899 Anapc11-202ENSMUST00000093140 962 ntAPPRIS P1 TSL 1 (best) BASIC30.56■■■□□ 2.48
Ddx58Q6Q899 Dda1-209ENSMUST00000147642 1865 ntTSL 2 BASIC30.56■■■□□ 2.48
Ddx58Q6Q899 Dtnbp1-202ENSMUST00000110128 1305 ntAPPRIS ALT2 TSL 5 BASIC30.55■■■□□ 2.48
Ddx58Q6Q899 A730013G03Rik-202ENSMUST00000195012 2097 ntBASIC30.54■■■□□ 2.48
Ddx58Q6Q899 Hsd17b11-201ENSMUST00000031251 1825 ntAPPRIS P1 TSL 1 (best) BASIC30.53■■■□□ 2.48
Ddx58Q6Q899 Aspscr1-201ENSMUST00000026135 1820 ntAPPRIS P1 TSL 1 (best) BASIC30.52■■■□□ 2.48
Ddx58Q6Q899 Stau2-210ENSMUST00000149320 2214 ntTSL 5 BASIC30.52■■■□□ 2.48
Ddx58Q6Q899 B4galt7-202ENSMUST00000100764 2195 ntTSL 1 (best) BASIC30.52■■■□□ 2.48
Ddx58Q6Q899 Tspan33-201ENSMUST00000046750 1994 ntAPPRIS P3 TSL 1 (best) BASIC30.52■■■□□ 2.48
Ddx58Q6Q899 AC153504.1-201ENSMUST00000218379 2290 ntBASIC30.52■■■□□ 2.48
Ddx58Q6Q899 Dpf1-204ENSMUST00000108231 2040 ntTSL 5 BASIC30.51■■■□□ 2.47
Ddx58Q6Q899 Rundc3a-203ENSMUST00000107103 1822 ntTSL 5 BASIC30.5■■■□□ 2.47
Ddx58Q6Q899 Tor1a-201ENSMUST00000028200 1401 ntAPPRIS P1 TSL 1 (best) BASIC30.49■■■□□ 2.47
Ddx58Q6Q899 Fam149b-202ENSMUST00000051915 1981 ntAPPRIS ALT2 TSL 5 BASIC30.49■■■□□ 2.47
Ddx58Q6Q899 Gm17110-201ENSMUST00000171248 735 ntTSL 3 BASIC30.49■■■□□ 2.47
Ddx58Q6Q899 Rnf220-212ENSMUST00000221654 1949 ntTSL 1 (best) BASIC30.49■■■□□ 2.47
Ddx58Q6Q899 Fam120aos-201ENSMUST00000180775 1780 ntTSL 1 (best) BASIC30.49■■■□□ 2.47
Ddx58Q6Q899 Rundc3a-204ENSMUST00000107105 1861 ntTSL 1 (best) BASIC30.48■■■□□ 2.47
Ddx58Q6Q899 Kcmf1-204ENSMUST00000204598 1743 ntTSL 1 (best) BASIC30.48■■■□□ 2.47
Ddx58Q6Q899 Ap1ar-210ENSMUST00000200409 2580 ntTSL 5 BASIC30.48■■■□□ 2.47
Ddx58Q6Q899 Gm5987-201ENSMUST00000196433 1151 ntBASIC30.48■■■□□ 2.47
Ddx58Q6Q899 Gas7-203ENSMUST00000108681 1595 ntAPPRIS ALT2 TSL 5 BASIC30.48■■■□□ 2.47
Ddx58Q6Q899 Dazap1-203ENSMUST00000105362 2081 ntAPPRIS P3 TSL 1 (best) BASIC30.46■■■□□ 2.47
Ddx58Q6Q899 Cldn10-203ENSMUST00000100314 2128 ntAPPRIS P1 TSL 1 (best) BASIC30.45■■■□□ 2.47
Ddx58Q6Q899 Gfra4-203ENSMUST00000110234 600 ntTSL 1 (best) BASIC30.45■■■□□ 2.47
Ddx58Q6Q899 Gfra4-204ENSMUST00000110235 573 ntTSL 1 (best) BASIC30.45■■■□□ 2.47
Ddx58Q6Q899 Gm28052-201ENSMUST00000150388 380 ntTSL 3 BASIC30.45■■■□□ 2.47
Ddx58Q6Q899 Zxdc-201ENSMUST00000045740 1612 ntAPPRIS ALT2 TSL 1 (best) BASIC30.44■■■□□ 2.46
Ddx58Q6Q899 Rbmxl2-201ENSMUST00000098135 1472 ntAPPRIS P1 BASIC30.44■■■□□ 2.46
Ddx58Q6Q899 Cacfd1-203ENSMUST00000114005 1286 ntTSL 1 (best) BASIC30.43■■■□□ 2.46
Ddx58Q6Q899 1700084E18Rik-202ENSMUST00000205624 729 ntBASIC30.43■■■□□ 2.46
Ddx58Q6Q899 1110065P20Rik-201ENSMUST00000106190 968 ntAPPRIS P1 TSL 2 BASIC30.42■■■□□ 2.46
Ddx58Q6Q899 Itpka-201ENSMUST00000028758 1818 ntAPPRIS P1 TSL 1 (best) BASIC30.4■■■□□ 2.46
Ddx58Q6Q899 Sys1-201ENSMUST00000072452 1606 ntAPPRIS P1 TSL 1 (best) BASIC30.4■■■□□ 2.46
Ddx58Q6Q899 E2f5-202ENSMUST00000165922 1751 ntAPPRIS ALT2 TSL 5 BASIC30.4■■■□□ 2.46
Ddx58Q6Q899 1810049J17Rik-201ENSMUST00000180521 462 ntAPPRIS P1 BASIC30.39■■■□□ 2.46
Ddx58Q6Q899 Hnrnpa0-201ENSMUST00000007980 2678 ntAPPRIS P1 BASIC30.38■■■□□ 2.45
Ddx58Q6Q899 Tmeff1-201ENSMUST00000030032 2461 ntAPPRIS P1 TSL 1 (best) BASIC30.38■■■□□ 2.45
Ddx58Q6Q899 Mapkap1-201ENSMUST00000113123 1530 ntTSL 5 BASIC30.37■■■□□ 2.45
Ddx58Q6Q899 Hspb1-202ENSMUST00000111155 930 ntTSL 1 (best) BASIC30.37■■■□□ 2.45
Ddx58Q6Q899 Ppp1r3e-202ENSMUST00000177403 1957 ntAPPRIS P1 TSL 5 BASIC30.36■■■□□ 2.45
Ddx58Q6Q899 Mat2b-201ENSMUST00000040167 1949 ntAPPRIS P1 TSL 1 (best) BASIC30.35■■■□□ 2.45
Ddx58Q6Q899 Galnt12-202ENSMUST00000107744 2077 ntTSL 1 (best) BASIC30.34■■■□□ 2.45
Ddx58Q6Q899 Pm20d2-202ENSMUST00000119167 1339 ntTSL 1 (best) BASIC30.34■■■□□ 2.45
Ddx58Q6Q899 Ppa2-201ENSMUST00000029644 1226 ntAPPRIS P3 TSL 1 (best) BASIC30.34■■■□□ 2.45
Ddx58Q6Q899 Zxda-201ENSMUST00000117281 2621 ntBASIC30.34■■■□□ 2.45
Ddx58Q6Q899 Rab40c-201ENSMUST00000026826 2466 ntAPPRIS P1 TSL 1 (best) BASIC30.33■■■□□ 2.45
Ddx58Q6Q899 Ywhaz-204ENSMUST00000110362 2122 ntAPPRIS P1 TSL 1 (best) BASIC30.33■■■□□ 2.45
Ddx58Q6Q899 Gm17494-201ENSMUST00000072769 1800 ntTSL 1 (best) BASIC30.33■■■□□ 2.45
Ddx58Q6Q899 Flt3l-211ENSMUST00000211429 1358 ntAPPRIS ALT2 TSL 1 (best) BASIC30.32■■■□□ 2.44
Ddx58Q6Q899 Gm19582-201ENSMUST00000187511 841 ntTSL 2 BASIC30.32■■■□□ 2.44
Ddx58Q6Q899 Gm7432-201ENSMUST00000210343 879 ntBASIC30.32■■■□□ 2.44
Ddx58Q6Q899 Ell2-205ENSMUST00000222194 434 ntTSL 3 BASIC30.32■■■□□ 2.44
Ddx58Q6Q899 Aspscr1-202ENSMUST00000103016 1689 ntTSL 5 BASIC30.32■■■□□ 2.44
Ddx58Q6Q899 Dapk3-201ENSMUST00000047665 1676 ntAPPRIS P1 TSL 5 BASIC30.31■■■□□ 2.44
Ddx58Q6Q899 Mxd4-202ENSMUST00000119171 1160 ntTSL 1 (best) BASIC30.31■■■□□ 2.44
Ddx58Q6Q899 Terf2-201ENSMUST00000068388 1915 ntAPPRIS ALT2 TSL 1 (best) BASIC30.31■■■□□ 2.44
Ddx58Q6Q899 Clk2-201ENSMUST00000090927 2128 ntAPPRIS ALT1 TSL 1 (best) BASIC30.3■■■□□ 2.44
Ddx58Q6Q899 Cacfd1-204ENSMUST00000114006 1648 ntAPPRIS P1 TSL 1 (best) BASIC30.29■■■□□ 2.44
Ddx58Q6Q899 Kansl2-202ENSMUST00000116400 2110 ntAPPRIS P2 TSL 1 (best) BASIC30.29■■■□□ 2.44
Ddx58Q6Q899 Tsen34-211ENSMUST00000205287 1375 ntTSL 5 BASIC30.29■■■□□ 2.44
Ddx58Q6Q899 Snx3-203ENSMUST00000105500 753 ntTSL 5 BASIC30.29■■■□□ 2.44
Ddx58Q6Q899 Rtn4r-201ENSMUST00000059589 1938 ntAPPRIS P1 TSL 1 (best) BASIC30.29■■■□□ 2.44
Ddx58Q6Q899 B230208H11Rik-201ENSMUST00000180529 1112 ntTSL 1 (best) BASIC30.28■■■□□ 2.44
Ddx58Q6Q899 Odc1-201ENSMUST00000171737 2208 ntAPPRIS P1 TSL 1 (best) BASIC30.28■■■□□ 2.44
Ddx58Q6Q899 Slc35a3-202ENSMUST00000120120 1791 ntAPPRIS P1 TSL 1 (best) BASIC30.28■■■□□ 2.44
Ddx58Q6Q899 Dtnb-211ENSMUST00000173240 2218 ntTSL 5 BASIC30.27■■■□□ 2.44
Ddx58Q6Q899 Bcl7b-202ENSMUST00000111187 564 ntTSL 1 (best) BASIC30.25■■■□□ 2.43
Ddx58Q6Q899 A030003K21Rik-201ENSMUST00000222600 830 ntAPPRIS P1 BASIC30.25■■■□□ 2.43
Ddx58Q6Q899 Tmem200b-201ENSMUST00000094666 1370 ntAPPRIS P1 BASIC30.25■■■□□ 2.43
Ddx58Q6Q899 Pcf11-205ENSMUST00000208255 1720 ntBASIC30.25■■■□□ 2.43
Ddx58Q6Q899 1700003F12Rik-202ENSMUST00000109709 704 ntAPPRIS ALT2 TSL 3 BASIC30.24■■■□□ 2.43
Ddx58Q6Q899 1700003F12Rik-201ENSMUST00000045116 704 ntAPPRIS P2 TSL 1 (best) BASIC30.24■■■□□ 2.43
Ddx58Q6Q899 Fank1-204ENSMUST00000209511 1392 ntTSL 5 BASIC30.24■■■□□ 2.43
Ddx58Q6Q899 Gm30023-201ENSMUST00000197970 889 ntBASIC30.23■■■□□ 2.43
Ddx58Q6Q899 E130102H24Rik-201ENSMUST00000144604 741 ntTSL 1 (best) BASIC30.2■■■□□ 2.43
Ddx58Q6Q899 Snrpe-202ENSMUST00000164574 597 ntTSL 3 BASIC30.19■■■□□ 2.42
Ddx58Q6Q899 Wt1-209ENSMUST00000213301 1554 ntAPPRIS P2 TSL 1 (best) BASIC30.19■■■□□ 2.42
Ddx58Q6Q899 Zfp358-201ENSMUST00000061508 1999 ntAPPRIS P1 TSL 1 (best) BASIC30.19■■■□□ 2.42
Retrieved 100 of 76,532 protein–RNA pairs in 17.8 ms