Protein–RNA interactions for Protein: Q61069

Usf1, Upstream stimulatory factor 1, mousemouse

Predictions only

Length 310 aa.

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Protein RNA Prediction (catRAPID) Interaction (Experimental data)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
Usf1Q61069 Mtor-201ENSMUST00000057580 1003 ntTSL 1 (best) BASIC22.69■■□□□ 1.22
Usf1Q61069 Igfbp7-201ENSMUST00000046746 1116 ntAPPRIS ALT2 TSL 1 (best) BASIC22.68■■□□□ 1.22
Usf1Q61069 Popdc3-201ENSMUST00000019994 1853 ntAPPRIS P1 TSL 1 (best) BASIC22.67■■□□□ 1.22
Usf1Q61069 C130046K22Rik-201ENSMUST00000129780 727 ntTSL 5 BASIC22.67■■□□□ 1.22
Usf1Q61069 Rundc3a-203ENSMUST00000107103 1822 ntTSL 5 BASIC22.66■■□□□ 1.22
Usf1Q61069 Cap2-205ENSMUST00000225824 1634 ntBASIC22.64■■□□□ 1.22
Usf1Q61069 Msantd2-201ENSMUST00000048604 2291 ntAPPRIS P1 TSL 1 (best) BASIC22.64■■□□□ 1.21
Usf1Q61069 Pard6a-201ENSMUST00000093195 1265 ntAPPRIS P3 TSL 1 (best) BASIC22.63■■□□□ 1.21
Usf1Q61069 Pcgf5-201ENSMUST00000062389 1566 ntTSL 5 BASIC22.63■■□□□ 1.21
Usf1Q61069 Cebpb-201ENSMUST00000070642 1504 ntAPPRIS P1 BASIC22.62■■□□□ 1.21
Usf1Q61069 E130218I03Rik-204ENSMUST00000131447 888 ntAPPRIS P1 TSL 5 BASIC22.62■■□□□ 1.21
Usf1Q61069 Mad2l2-202ENSMUST00000084129 1162 ntAPPRIS P1 TSL 1 (best) BASIC22.62■■□□□ 1.21
Usf1Q61069 Mrps7-201ENSMUST00000058109 1962 ntAPPRIS P1 TSL 1 (best) BASIC22.61■■□□□ 1.21
Usf1Q61069 Ctbp1-206ENSMUST00000201575 2091 ntTSL 1 (best) BASIC22.59■■□□□ 1.21
Usf1Q61069 Pm20d2-202ENSMUST00000119167 1339 ntTSL 1 (best) BASIC22.58■■□□□ 1.21
Usf1Q61069 Hspd1-201ENSMUST00000027123 2423 ntAPPRIS P1 TSL 1 (best) BASIC22.58■■□□□ 1.21
Usf1Q61069 AC131739.1-201ENSMUST00000221692 1245 ntBASIC22.58■■□□□ 1.21
Usf1Q61069 Fank1-204ENSMUST00000209511 1392 ntTSL 5 BASIC22.58■■□□□ 1.21
Usf1Q61069 A830010M20Rik-202ENSMUST00000094541 1134 ntTSL 5 BASIC22.57■■□□□ 1.2
Usf1Q61069 Tmem200b-201ENSMUST00000094666 1370 ntAPPRIS P1 BASIC22.57■■□□□ 1.2
Usf1Q61069 Stk24-201ENSMUST00000079817 2676 ntAPPRIS P1 TSL 1 (best) BASIC22.56■■□□□ 1.2
Usf1Q61069 Gm2415-204ENSMUST00000190235 2004 ntBASIC22.55■■□□□ 1.2
Usf1Q61069 C1ql1-201ENSMUST00000057849 1473 ntAPPRIS P1 TSL 1 (best) BASIC22.55■■□□□ 1.2
Usf1Q61069 Fcnaos-201ENSMUST00000127642 1351 ntTSL 1 (best) BASIC22.55■■□□□ 1.2
Usf1Q61069 Zcrb1-201ENSMUST00000076070 877 ntAPPRIS P3 TSL 1 (best) BASIC22.55■■□□□ 1.2
Usf1Q61069 Gm6311-201ENSMUST00000073790 878 ntBASIC22.54■■□□□ 1.2
Usf1Q61069 Syndig1l-204ENSMUST00000222422 1758 ntAPPRIS P1 TSL 1 (best) BASIC22.52■■□□□ 1.2
Usf1Q61069 Pdss1-201ENSMUST00000053729 1642 ntAPPRIS P1 TSL 1 (best) BASIC22.51■■□□□ 1.19
Usf1Q61069 Fam89a-201ENSMUST00000055257 1338 ntAPPRIS P1 TSL 1 (best) BASIC22.51■■□□□ 1.19
Usf1Q61069 Slc30a2-203ENSMUST00000105873 1224 ntTSL 5 BASIC22.49■■□□□ 1.19
Usf1Q61069 1810049J17Rik-201ENSMUST00000180521 462 ntAPPRIS P1 BASIC22.49■■□□□ 1.19
Usf1Q61069 Eci1-201ENSMUST00000024946 1091 ntAPPRIS P1 TSL 1 (best) BASIC22.49■■□□□ 1.19
Usf1Q61069 Tceal3-201ENSMUST00000060904 1116 ntAPPRIS P1 TSL 1 (best) BASIC22.49■■□□□ 1.19
Usf1Q61069 Phf10-201ENSMUST00000024657 1663 ntAPPRIS P1 TSL 1 (best) BASIC22.49■■□□□ 1.19
Usf1Q61069 Yars2-201ENSMUST00000059955 1574 ntAPPRIS P1 TSL 1 (best) BASIC22.48■■□□□ 1.19
Usf1Q61069 Snx3-203ENSMUST00000105500 753 ntTSL 5 BASIC22.48■■□□□ 1.19
Usf1Q61069 Znrf1-207ENSMUST00000173506 1238 ntAPPRIS P1 TSL 2 BASIC22.48■■□□□ 1.19
Usf1Q61069 Rpl38-203ENSMUST00000106599 457 ntAPPRIS P1 TSL 1 (best) BASIC22.47■■□□□ 1.19
Usf1Q61069 Vegfb-202ENSMUST00000130048 1158 ntAPPRIS ALT2 TSL 1 (best) BASIC22.47■■□□□ 1.19
Usf1Q61069 AC167019.3-201ENSMUST00000228225 1266 ntBASIC22.47■■□□□ 1.19
Usf1Q61069 Gm28513-201ENSMUST00000191474 613 ntTSL 3 BASIC22.46■■□□□ 1.19
Usf1Q61069 Rbms1-202ENSMUST00000112509 1806 ntTSL 1 (best) BASIC22.45■■□□□ 1.19
Usf1Q61069 Pdia5-201ENSMUST00000023550 1808 ntAPPRIS P1 TSL 1 (best) BASIC22.45■■□□□ 1.19
Usf1Q61069 Zxdb-201ENSMUST00000101388 5619 ntAPPRIS P1 BASIC22.45■■□□□ 1.19
Usf1Q61069 Dnajc19-202ENSMUST00000108195 659 ntAPPRIS P1 TSL 1 (best) BASIC22.45■■□□□ 1.18
Usf1Q61069 Gm26588-201ENSMUST00000181064 2098 ntTSL 1 (best) BASIC22.45■■□□□ 1.18
Usf1Q61069 Tcfl5-201ENSMUST00000037877 2225 ntAPPRIS P1 TSL 1 (best) BASIC22.45■■□□□ 1.18
Usf1Q61069 Dlx4-201ENSMUST00000021241 2282 ntAPPRIS P1 TSL 1 (best) BASIC22.45■■□□□ 1.18
Usf1Q61069 Ptpn18-206ENSMUST00000188972 414 ntTSL 1 (best) BASIC22.44■■□□□ 1.18
Usf1Q61069 Fam69b-201ENSMUST00000074240 1622 ntAPPRIS P1 TSL 1 (best) BASIC22.43■■□□□ 1.18
Usf1Q61069 Kcnip2-208ENSMUST00000161886 693 ntAPPRIS P3 TSL 1 (best) BASIC22.43■■□□□ 1.18
Usf1Q61069 B230208H11Rik-201ENSMUST00000180529 1112 ntTSL 1 (best) BASIC22.43■■□□□ 1.18
Usf1Q61069 A030005K14Rik-201ENSMUST00000193762 1093 ntAPPRIS P1 BASIC22.43■■□□□ 1.18
Usf1Q61069 Ccnyl1-203ENSMUST00000187170 1506 ntAPPRIS P1 TSL 5 BASIC22.42■■□□□ 1.18
Usf1Q61069 Efhd1os-201ENSMUST00000138844 332 ntTSL 3 BASIC22.42■■□□□ 1.18
Usf1Q61069 Gm15156-201ENSMUST00000148217 417 ntTSL 3 BASIC22.42■■□□□ 1.18
Usf1Q61069 Ybx2-205ENSMUST00000149194 1235 ntTSL 5 BASIC22.41■■□□□ 1.18
Usf1Q61069 Gm6658-202ENSMUST00000209493 1885 ntBASIC22.41■■□□□ 1.18
Usf1Q61069 Mapkapk5-201ENSMUST00000031410 2234 ntAPPRIS P2 TSL 1 (best) BASIC22.41■■□□□ 1.18
Usf1Q61069 Tsen34-201ENSMUST00000038521 1365 ntAPPRIS P1 TSL 5 BASIC22.4■■□□□ 1.18
Usf1Q61069 Rab4b-201ENSMUST00000093040 1192 ntAPPRIS P1 TSL 1 (best) BASIC22.4■■□□□ 1.18
Usf1Q61069 Map3k10-204ENSMUST00000138243 1621 ntTSL 1 (best) BASIC22.39■■□□□ 1.18
Usf1Q61069 Tmco6-201ENSMUST00000007046 1817 ntAPPRIS P1 TSL 1 (best) BASIC22.39■■□□□ 1.17
Usf1Q61069 Paqr6-203ENSMUST00000147948 837 ntTSL 2 BASIC22.39■■□□□ 1.17
Usf1Q61069 Gjc1-201ENSMUST00000068933 1903 ntAPPRIS P1 TSL 1 (best) BASIC22.39■■□□□ 1.17
Usf1Q61069 Dctpp1-201ENSMUST00000035276 676 ntAPPRIS P1 TSL 1 (best) BASIC22.38■■□□□ 1.17
Usf1Q61069 Fam3c-201ENSMUST00000081288 1487 ntTSL 1 (best) BASIC22.38■■□□□ 1.17
Usf1Q61069 Gm6345-201ENSMUST00000180378 1691 ntBASIC22.38■■□□□ 1.17
Usf1Q61069 Tpm1-216ENSMUST00000113707 1898 ntTSL 1 (best) BASIC22.38■■□□□ 1.17
Usf1Q61069 Stard10-202ENSMUST00000163799 1723 ntTSL 1 (best) BASIC22.37■■□□□ 1.17
Usf1Q61069 Hs3st6-201ENSMUST00000044922 1219 ntAPPRIS P1 TSL 1 (best) BASIC22.36■■□□□ 1.17
Usf1Q61069 Gm16764-201ENSMUST00000138891 541 ntTSL 5 BASIC22.35■■□□□ 1.17
Usf1Q61069 Gm44957-202ENSMUST00000205137 448 ntTSL 3 BASIC22.35■■□□□ 1.17
Usf1Q61069 Rab26-202ENSMUST00000061764 1291 ntTSL 2 BASIC22.35■■□□□ 1.17
Usf1Q61069 Gjd3-201ENSMUST00000062931 837 ntAPPRIS P1 BASIC22.35■■□□□ 1.17
Usf1Q61069 Lactb-201ENSMUST00000034929 2031 ntAPPRIS P1 TSL 1 (best) BASIC22.34■■□□□ 1.17
Usf1Q61069 Aspscr1-202ENSMUST00000103016 1689 ntTSL 5 BASIC22.33■■□□□ 1.17
Usf1Q61069 Pfn2-202ENSMUST00000119344 1879 ntTSL 1 (best) BASIC22.33■■□□□ 1.17
Usf1Q61069 Gm28529-202ENSMUST00000189675 670 ntTSL 2 BASIC22.33■■□□□ 1.17
Usf1Q61069 Gas7-203ENSMUST00000108681 1595 ntAPPRIS ALT2 TSL 5 BASIC22.33■■□□□ 1.16
Usf1Q61069 Guf1-201ENSMUST00000031113 1769 ntTSL 1 (best) BASIC22.32■■□□□ 1.16
Usf1Q61069 Yrdc-201ENSMUST00000102628 1634 ntAPPRIS P1 TSL 1 (best) BASIC22.31■■□□□ 1.16
Usf1Q61069 Zxdc-201ENSMUST00000045740 1612 ntAPPRIS ALT2 TSL 1 (best) BASIC22.31■■□□□ 1.16
Usf1Q61069 Wt1-209ENSMUST00000213301 1554 ntAPPRIS P2 TSL 1 (best) BASIC22.31■■□□□ 1.16
Usf1Q61069 Mrpl23-201ENSMUST00000038675 692 ntAPPRIS P2 TSL 1 (best) BASIC22.31■■□□□ 1.16
Usf1Q61069 Fus-204ENSMUST00000121616 1102 ntTSL 1 (best) BASIC22.3■■□□□ 1.16
Usf1Q61069 Six3-202ENSMUST00000175898 2419 ntAPPRIS P2 TSL 1 (best) BASIC22.3■■□□□ 1.16
Usf1Q61069 Particl-201ENSMUST00000205370 1560 ntBASIC22.29■■□□□ 1.16
Usf1Q61069 Eif4e2-204ENSMUST00000113231 1119 ntTSL 1 (best) BASIC22.29■■□□□ 1.16
Usf1Q61069 Chpt1-204ENSMUST00000117579 1043 ntAPPRIS ALT2 TSL 1 (best) BASIC22.29■■□□□ 1.16
Usf1Q61069 Card19-201ENSMUST00000048946 804 ntAPPRIS P1 TSL 1 (best) BASIC22.28■■□□□ 1.16
Usf1Q61069 Mcat-201ENSMUST00000061882 1893 ntAPPRIS P1 TSL 1 (best) BASIC22.28■■□□□ 1.16
Usf1Q61069 Unc119-203ENSMUST00000108295 1371 ntTSL 3 BASIC22.27■■□□□ 1.16
Usf1Q61069 Tceal3-202ENSMUST00000113100 1148 ntAPPRIS P1 TSL 1 (best) BASIC22.27■■□□□ 1.16
Usf1Q61069 Smad7-202ENSMUST00000168918 1882 ntAPPRIS P1 TSL 1 (best) BASIC22.27■■□□□ 1.16
Usf1Q61069 Izumo4-205ENSMUST00000218184 1196 ntAPPRIS P1 TSL 2 BASIC22.27■■□□□ 1.16
Usf1Q61069 Adgrb2-207ENSMUST00000120204 5170 ntAPPRIS ALT2 TSL 1 (best) BASIC22.26■■□□□ 1.15
Usf1Q61069 Ube2j2-205ENSMUST00000105583 1434 ntTSL 1 (best) BASIC22.26■■□□□ 1.15
Usf1Q61069 Smad2-202ENSMUST00000091831 1645 ntAPPRIS ALT1 TSL 5 BASIC22.25■■□□□ 1.15
Usf1Q61069 Ring1-201ENSMUST00000025183 2034 ntAPPRIS P1 TSL 1 (best) BASIC22.25■■□□□ 1.15
Retrieved 100 of 76,532 protein–RNA pairs in 13.2 ms