Protein–RNA interactions for Protein: Q5R1F6

Trav5d-4, T cell receptor alpha variable 5D-4 (Fragment), mousemouse

Predictions only

Length 114 aa.

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Protein RNA Prediction (catRAPID) Interaction (Experimental data)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
Trav5d-4Q5R1F6 1700069B07Rik-202ENSMUST00000191155 939 ntBASIC20.87■□□□□ 0.93
Trav5d-4Q5R1F6 Htra4-201ENSMUST00000084031 2180 ntAPPRIS P1 TSL 1 (best) BASIC20.87■□□□□ 0.93
Trav5d-4Q5R1F6 Klhl35-201ENSMUST00000037359 1954 ntAPPRIS P1 TSL 1 (best) BASIC20.86■□□□□ 0.93
Trav5d-4Q5R1F6 Rgs7-206ENSMUST00000194555 2431 ntAPPRIS ALT2 TSL 1 (best) BASIC20.85■□□□□ 0.93
Trav5d-4Q5R1F6 Nrep-202ENSMUST00000168890 2185 ntAPPRIS P1 TSL 1 (best) BASIC20.85■□□□□ 0.93
Trav5d-4Q5R1F6 Pcgf5-201ENSMUST00000062389 1566 ntTSL 5 BASIC20.85■□□□□ 0.93
Trav5d-4Q5R1F6 Tor1a-201ENSMUST00000028200 1401 ntAPPRIS P1 TSL 1 (best) BASIC20.84■□□□□ 0.93
Trav5d-4Q5R1F6 Ankrd28-201ENSMUST00000014640 6712 ntAPPRIS P2 TSL 1 (best) BASIC20.83■□□□□ 0.93
Trav5d-4Q5R1F6 Gnaq-201ENSMUST00000025541 5644 ntAPPRIS P1 TSL 1 (best) BASIC20.83■□□□□ 0.92
Trav5d-4Q5R1F6 Irf2bp2-201ENSMUST00000054960 5080 ntAPPRIS P1 TSL 2 BASIC20.82■□□□□ 0.92
Trav5d-4Q5R1F6 BC037032-205ENSMUST00000187080 508 ntTSL 5 BASIC20.82■□□□□ 0.92
Trav5d-4Q5R1F6 Pard6a-205ENSMUST00000212430 1261 ntAPPRIS ALT1 TSL 1 (best) BASIC20.82■□□□□ 0.92
Trav5d-4Q5R1F6 Rab40c-209ENSMUST00000179998 2456 ntAPPRIS P1 TSL 5 BASIC20.82■□□□□ 0.92
Trav5d-4Q5R1F6 Gltp-203ENSMUST00000112214 944 ntTSL 3 BASIC20.81■□□□□ 0.92
Trav5d-4Q5R1F6 Amigo1-203ENSMUST00000106659 1360 ntTSL 1 (best) BASIC20.81■□□□□ 0.92
Trav5d-4Q5R1F6 Ubp1-203ENSMUST00000116492 2111 ntAPPRIS ALT1 TSL 1 (best) BASIC20.81■□□□□ 0.92
Trav5d-4Q5R1F6 Kcmf1-204ENSMUST00000204598 1743 ntTSL 1 (best) BASIC20.81■□□□□ 0.92
Trav5d-4Q5R1F6 C1ql1-201ENSMUST00000057849 1473 ntAPPRIS P1 TSL 1 (best) BASIC20.81■□□□□ 0.92
Trav5d-4Q5R1F6 Yrdc-201ENSMUST00000102628 1634 ntAPPRIS P1 TSL 1 (best) BASIC20.8■□□□□ 0.92
Trav5d-4Q5R1F6 Slc35a3-202ENSMUST00000120120 1791 ntAPPRIS P1 TSL 1 (best) BASIC20.79■□□□□ 0.92
Trav5d-4Q5R1F6 Capns1-201ENSMUST00000001845 1600 ntAPPRIS P2 TSL 5 BASIC20.78■□□□□ 0.92
Trav5d-4Q5R1F6 Il3ra-201ENSMUST00000090591 1614 ntAPPRIS P2 TSL 1 (best) BASIC20.78■□□□□ 0.92
Trav5d-4Q5R1F6 Gm43863-201ENSMUST00000203822 1192 ntBASIC20.78■□□□□ 0.92
Trav5d-4Q5R1F6 Tdp2-203ENSMUST00000223804 1136 ntBASIC20.78■□□□□ 0.92
Trav5d-4Q5R1F6 Hsd17b11-201ENSMUST00000031251 1825 ntAPPRIS P1 TSL 1 (best) BASIC20.78■□□□□ 0.92
Trav5d-4Q5R1F6 Lmo2-202ENSMUST00000111140 1706 ntTSL 1 (best) BASIC20.78■□□□□ 0.92
Trav5d-4Q5R1F6 Det1-201ENSMUST00000032839 2269 ntAPPRIS P1 TSL 1 (best) BASIC20.78■□□□□ 0.92
Trav5d-4Q5R1F6 1810026B05Rik-206ENSMUST00000187421 519 ntTSL 3 BASIC20.77■□□□□ 0.92
Trav5d-4Q5R1F6 Neurog2-201ENSMUST00000029587 2227 ntAPPRIS P1 TSL 1 (best) BASIC20.76■□□□□ 0.91
Trav5d-4Q5R1F6 Cacfd1-204ENSMUST00000114006 1648 ntAPPRIS P1 TSL 1 (best) BASIC20.76■□□□□ 0.91
Trav5d-4Q5R1F6 Gm9397-201ENSMUST00000200125 605 ntBASIC20.76■□□□□ 0.91
Trav5d-4Q5R1F6 Eid2-201ENSMUST00000059596 1392 ntAPPRIS P1 BASIC20.75■□□□□ 0.91
Trav5d-4Q5R1F6 Qrich1-209ENSMUST00000194385 975 ntTSL 2 BASIC20.75■□□□□ 0.91
Trav5d-4Q5R1F6 Cdc14b-207ENSMUST00000221634 1953 ntAPPRIS ALT2 TSL 1 (best) BASIC20.75■□□□□ 0.91
Trav5d-4Q5R1F6 Lrfn1-203ENSMUST00000189877 1852 ntAPPRIS P3 TSL 5 BASIC20.75■□□□□ 0.91
Trav5d-4Q5R1F6 Cpsf4-201ENSMUST00000070487 1606 ntTSL 1 (best) BASIC20.75■□□□□ 0.91
Trav5d-4Q5R1F6 Dazap1-202ENSMUST00000105361 1537 ntAPPRIS ALT1 TSL 1 (best) BASIC20.73■□□□□ 0.91
Trav5d-4Q5R1F6 2310050C09Rik-201ENSMUST00000163439 1078 ntAPPRIS P1 TSL 2 BASIC20.73■□□□□ 0.91
Trav5d-4Q5R1F6 Dleu2-206ENSMUST00000182537 318 ntTSL 2 BASIC20.73■□□□□ 0.91
Trav5d-4Q5R1F6 Stard3nl-210ENSMUST00000222869 1030 ntTSL 5 BASIC20.72■□□□□ 0.91
Trav5d-4Q5R1F6 Yars2-201ENSMUST00000059955 1574 ntAPPRIS P1 TSL 1 (best) BASIC20.72■□□□□ 0.91
Trav5d-4Q5R1F6 Fgf20-201ENSMUST00000034014 1476 ntAPPRIS P1 TSL 1 (best) BASIC20.71■□□□□ 0.91
Trav5d-4Q5R1F6 Pcf11-205ENSMUST00000208255 1720 ntBASIC20.71■□□□□ 0.91
Trav5d-4Q5R1F6 Reep6-202ENSMUST00000105354 2208 ntAPPRIS P3 TSL 1 (best) BASIC20.71■□□□□ 0.91
Trav5d-4Q5R1F6 Reep6-205ENSMUST00000105358 2208 ntTSL 1 (best) BASIC20.71■□□□□ 0.91
Trav5d-4Q5R1F6 1190005I06Rik-201ENSMUST00000123927 844 ntAPPRIS P2 TSL 1 (best) BASIC20.7■□□□□ 0.9
Trav5d-4Q5R1F6 Marveld2-202ENSMUST00000163163 2187 ntTSL 1 (best) BASIC20.69■□□□□ 0.9
Trav5d-4Q5R1F6 AC157572.2-201ENSMUST00000226970 908 ntBASIC20.69■□□□□ 0.9
Trav5d-4Q5R1F6 Zmynd12-201ENSMUST00000094819 1464 ntAPPRIS P1 TSL 1 (best) BASIC20.69■□□□□ 0.9
Trav5d-4Q5R1F6 Rcan1-202ENSMUST00000060005 2324 ntTSL 1 (best) BASIC20.69■□□□□ 0.9
Trav5d-4Q5R1F6 Gm45855-201ENSMUST00000212546 880 ntBASIC20.68■□□□□ 0.9
Trav5d-4Q5R1F6 Itpka-201ENSMUST00000028758 1818 ntAPPRIS P1 TSL 1 (best) BASIC20.68■□□□□ 0.9
Trav5d-4Q5R1F6 Isoc1-201ENSMUST00000025503 2563 ntAPPRIS P1 TSL 1 (best) BASIC20.68■□□□□ 0.9
Trav5d-4Q5R1F6 Zswim6-201ENSMUST00000105097 5456 ntTSL 5 BASIC20.67■□□□□ 0.9
Trav5d-4Q5R1F6 A530058N18Rik-204ENSMUST00000141209 709 ntTSL 5 BASIC20.67■□□□□ 0.9
Trav5d-4Q5R1F6 Gm24970-201ENSMUST00000175582 82 ntBASIC20.66■□□□□ 0.9
Trav5d-4Q5R1F6 1110008F13Rik-201ENSMUST00000029165 1045 ntAPPRIS P1 TSL 1 (best) BASIC20.66■□□□□ 0.9
Trav5d-4Q5R1F6 Zbtb12-201ENSMUST00000052778 1858 ntAPPRIS P1 TSL 1 (best) BASIC20.66■□□□□ 0.9
Trav5d-4Q5R1F6 St6galnac6-204ENSMUST00000095045 2536 ntAPPRIS ALT1 TSL 1 (best) BASIC20.65■□□□□ 0.9
Trav5d-4Q5R1F6 E2f5-201ENSMUST00000029069 1779 ntAPPRIS P2 TSL 1 (best) BASIC20.65■□□□□ 0.9
Trav5d-4Q5R1F6 Tmem243-201ENSMUST00000115365 1040 ntAPPRIS P1 TSL 2 BASIC20.65■□□□□ 0.9
Trav5d-4Q5R1F6 Ryk-201ENSMUST00000035142 2852 ntAPPRIS ALT2 TSL 1 (best) BASIC20.65■□□□□ 0.9
Trav5d-4Q5R1F6 Eed-201ENSMUST00000107234 2067 ntAPPRIS P1 TSL 1 (best) BASIC20.65■□□□□ 0.9
Trav5d-4Q5R1F6 Fam149b-202ENSMUST00000051915 1981 ntAPPRIS ALT2 TSL 5 BASIC20.65■□□□□ 0.9
Trav5d-4Q5R1F6 Zfp91-201ENSMUST00000038627 5531 ntAPPRIS P1 TSL 1 (best) BASIC20.63■□□□□ 0.89
Trav5d-4Q5R1F6 Pm20d2-201ENSMUST00000098181 1445 ntAPPRIS P1 TSL 5 BASIC20.63■□□□□ 0.89
Trav5d-4Q5R1F6 E2f5-202ENSMUST00000165922 1751 ntAPPRIS ALT2 TSL 5 BASIC20.63■□□□□ 0.89
Trav5d-4Q5R1F6 Wdr34-201ENSMUST00000113711 1814 ntAPPRIS P1 TSL 1 (best) BASIC20.62■□□□□ 0.89
Trav5d-4Q5R1F6 Dlx6os2-201ENSMUST00000178206 1354 ntBASIC20.62■□□□□ 0.89
Trav5d-4Q5R1F6 1810026B05Rik-202ENSMUST00000184554 782 ntTSL 3 BASIC20.61■□□□□ 0.89
Trav5d-4Q5R1F6 Syndig1l-204ENSMUST00000222422 1758 ntAPPRIS P1 TSL 1 (best) BASIC20.61■□□□□ 0.89
Trav5d-4Q5R1F6 Ebf4-203ENSMUST00000110288 2982 ntAPPRIS ALT2 TSL 5 BASIC20.61■□□□□ 0.89
Trav5d-4Q5R1F6 Tm6sf1-201ENSMUST00000041890 2226 ntAPPRIS P1 TSL 1 (best) BASIC20.6■□□□□ 0.89
Trav5d-4Q5R1F6 Pcgf5-210ENSMUST00000225411 1626 ntAPPRIS P5 BASIC20.6■□□□□ 0.89
Trav5d-4Q5R1F6 Maf-201ENSMUST00000069009 3223 ntAPPRIS ALT2 TSL 1 (best) BASIC20.59■□□□□ 0.89
Trav5d-4Q5R1F6 Mthfd2l-203ENSMUST00000202781 688 ntTSL 1 (best) BASIC20.58■□□□□ 0.89
Trav5d-4Q5R1F6 Ablim1-208ENSMUST00000111544 2231 ntTSL 5 BASIC20.58■□□□□ 0.88
Trav5d-4Q5R1F6 Foxc1-201ENSMUST00000062292 5844 ntAPPRIS P1 BASIC20.58■□□□□ 0.88
Trav5d-4Q5R1F6 Clptm1l-201ENSMUST00000022102 2340 ntAPPRIS P1 TSL 1 (best) BASIC20.58■□□□□ 0.88
Trav5d-4Q5R1F6 Gm26508-201ENSMUST00000181285 1516 ntTSL 5 BASIC20.57■□□□□ 0.88
Trav5d-4Q5R1F6 4930577N17Rik-201ENSMUST00000139771 1625 ntBASIC20.56■□□□□ 0.88
Trav5d-4Q5R1F6 Xkr7-201ENSMUST00000037235 2711 ntAPPRIS P1 TSL 1 (best) BASIC20.56■□□□□ 0.88
Trav5d-4Q5R1F6 P2rx2-205ENSMUST00000200037 1569 ntAPPRIS ALT2 TSL 1 (best) BASIC20.56■□□□□ 0.88
Trav5d-4Q5R1F6 Kansl2-201ENSMUST00000023727 2311 ntAPPRIS ALT2 TSL 5 BASIC20.56■□□□□ 0.88
Trav5d-4Q5R1F6 Bcl7b-201ENSMUST00000031692 1758 ntAPPRIS P2 TSL 1 (best) BASIC20.56■□□□□ 0.88
Trav5d-4Q5R1F6 Cdv3-205ENSMUST00000189896 1023 ntAPPRIS ALT2 TSL 1 (best) BASIC20.55■□□□□ 0.88
Trav5d-4Q5R1F6 E2f6-201ENSMUST00000020908 2418 ntAPPRIS P1 TSL 1 (best) BASIC20.55■□□□□ 0.88
Trav5d-4Q5R1F6 Fam3c-201ENSMUST00000081288 1487 ntTSL 1 (best) BASIC20.55■□□□□ 0.88
Trav5d-4Q5R1F6 St7-208ENSMUST00000115419 2194 ntTSL 1 (best) BASIC20.54■□□□□ 0.88
Trav5d-4Q5R1F6 Zfp422-201ENSMUST00000057540 2375 ntAPPRIS P1 TSL 1 (best) BASIC20.54■□□□□ 0.88
Trav5d-4Q5R1F6 C2cd4d-201ENSMUST00000169433 1321 ntAPPRIS P1 TSL 3 BASIC20.53■□□□□ 0.88
Trav5d-4Q5R1F6 Cdk2ap1-201ENSMUST00000031341 1315 ntAPPRIS P2 TSL 1 (best) BASIC20.53■□□□□ 0.88
Trav5d-4Q5R1F6 Mast2-203ENSMUST00000106485 5705 ntAPPRIS ALT2 TSL 1 (best) BASIC20.53■□□□□ 0.88
Trav5d-4Q5R1F6 Mast2-204ENSMUST00000106486 5723 ntAPPRIS P4 TSL 1 (best) BASIC20.53■□□□□ 0.88
Trav5d-4Q5R1F6 Mnx1-201ENSMUST00000001608 2018 ntAPPRIS ALT2 TSL 5 BASIC20.52■□□□□ 0.88
Trav5d-4Q5R1F6 Mapk1-203ENSMUST00000115731 1747 ntAPPRIS P1 TSL 1 (best) BASIC20.52■□□□□ 0.88
Trav5d-4Q5R1F6 Sys1-201ENSMUST00000072452 1606 ntAPPRIS P1 TSL 1 (best) BASIC20.52■□□□□ 0.88
Trav5d-4Q5R1F6 Kcna7-201ENSMUST00000107774 2182 ntAPPRIS P1 TSL 1 (best) BASIC20.52■□□□□ 0.88
Trav5d-4Q5R1F6 Epb41l4b-203ENSMUST00000095076 6746 ntAPPRIS ALT2 TSL 5 BASIC20.51■□□□□ 0.87
Trav5d-4Q5R1F6 Msi2-202ENSMUST00000107908 695 ntTSL 5 BASIC20.51■□□□□ 0.87
Retrieved 100 of 76,532 protein–RNA pairs in 16.2 ms