Protein–RNA interactions for Protein: Q5R1E6

Trav6-3, T cell receptor alpha variable 6-3 (Fragment), mousemouse

Predictions only

Length 112 aa.

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Protein RNA Prediction (catRAPID) Interaction (Experimental data)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
Trav6-3Q5R1E6 Wdr34-201ENSMUST00000113711 1814 ntAPPRIS P1 TSL 1 (best) BASIC19.53■□□□□ 0.72
Trav6-3Q5R1E6 Pcgf5-210ENSMUST00000225411 1626 ntAPPRIS P5 BASIC19.53■□□□□ 0.72
Trav6-3Q5R1E6 Kansl2-201ENSMUST00000023727 2311 ntAPPRIS ALT2 TSL 5 BASIC19.53■□□□□ 0.72
Trav6-3Q5R1E6 Clptm1l-201ENSMUST00000022102 2340 ntAPPRIS P1 TSL 1 (best) BASIC19.52■□□□□ 0.71
Trav6-3Q5R1E6 Hsd17b11-201ENSMUST00000031251 1825 ntAPPRIS P1 TSL 1 (best) BASIC19.51■□□□□ 0.71
Trav6-3Q5R1E6 Pcgf5-201ENSMUST00000062389 1566 ntTSL 5 BASIC19.51■□□□□ 0.71
Trav6-3Q5R1E6 St6galnac6-204ENSMUST00000095045 2536 ntAPPRIS ALT1 TSL 1 (best) BASIC19.51■□□□□ 0.71
Trav6-3Q5R1E6 Kcmf1-204ENSMUST00000204598 1743 ntTSL 1 (best) BASIC19.51■□□□□ 0.71
Trav6-3Q5R1E6 C1ql1-201ENSMUST00000057849 1473 ntAPPRIS P1 TSL 1 (best) BASIC19.5■□□□□ 0.71
Trav6-3Q5R1E6 Lmo2-202ENSMUST00000111140 1706 ntTSL 1 (best) BASIC19.5■□□□□ 0.71
Trav6-3Q5R1E6 Hoxa13-201ENSMUST00000047993 1309 ntAPPRIS ALT2 TSL 5 BASIC19.5■□□□□ 0.71
Trav6-3Q5R1E6 Stard10-202ENSMUST00000163799 1723 ntTSL 1 (best) BASIC19.49■□□□□ 0.71
Trav6-3Q5R1E6 Panx2-202ENSMUST00000161372 2314 ntTSL 1 (best) BASIC19.49■□□□□ 0.71
Trav6-3Q5R1E6 Pcf11-205ENSMUST00000208255 1720 ntBASIC19.48■□□□□ 0.71
Trav6-3Q5R1E6 Irf2bp2-201ENSMUST00000054960 5080 ntAPPRIS P1 TSL 2 BASIC19.48■□□□□ 0.71
Trav6-3Q5R1E6 Mnx1-201ENSMUST00000001608 2018 ntAPPRIS ALT2 TSL 5 BASIC19.47■□□□□ 0.71
Trav6-3Q5R1E6 Sec63-201ENSMUST00000019937 6032 ntAPPRIS P1 TSL 1 (best) BASIC19.47■□□□□ 0.71
Trav6-3Q5R1E6 Hrh3-208ENSMUST00000171736 906 ntTSL 5 BASIC19.47■□□□□ 0.71
Trav6-3Q5R1E6 Yrdc-201ENSMUST00000102628 1634 ntAPPRIS P1 TSL 1 (best) BASIC19.47■□□□□ 0.71
Trav6-3Q5R1E6 Nelfe-204ENSMUST00000173357 1399 ntAPPRIS P1 TSL 1 (best) BASIC19.46■□□□□ 0.71
Trav6-3Q5R1E6 Gpr27-201ENSMUST00000101122 2388 ntAPPRIS P1 BASIC19.46■□□□□ 0.71
Trav6-3Q5R1E6 Bcl7b-201ENSMUST00000031692 1758 ntAPPRIS P2 TSL 1 (best) BASIC19.46■□□□□ 0.71
Trav6-3Q5R1E6 Junos-204ENSMUST00000128094 830 ntTSL 1 (best) BASIC19.45■□□□□ 0.7
Trav6-3Q5R1E6 AI837181-202ENSMUST00000159759 1515 ntAPPRIS P1 TSL 1 (best) BASIC19.45■□□□□ 0.7
Trav6-3Q5R1E6 Ctbp1-211ENSMUST00000202868 2436 ntAPPRIS ALT1 TSL 1 (best) BASIC19.44■□□□□ 0.7
Trav6-3Q5R1E6 Adgrb1-203ENSMUST00000185682 2744 ntTSL 1 (best) BASIC19.43■□□□□ 0.7
Trav6-3Q5R1E6 Fam60a-203ENSMUST00000111562 906 ntAPPRIS P1 TSL 3 BASIC19.43■□□□□ 0.7
Trav6-3Q5R1E6 Xkr7-201ENSMUST00000037235 2711 ntAPPRIS P1 TSL 1 (best) BASIC19.43■□□□□ 0.7
Trav6-3Q5R1E6 Srp9-201ENSMUST00000027792 1367 ntAPPRIS P1 TSL 1 (best) BASIC19.43■□□□□ 0.7
Trav6-3Q5R1E6 1700028N14Rik-201ENSMUST00000139621 747 ntTSL 1 (best) BASIC19.42■□□□□ 0.7
Trav6-3Q5R1E6 Ccdc122-202ENSMUST00000095625 1195 ntAPPRIS ALT2 TSL 1 (best) BASIC19.42■□□□□ 0.7
Trav6-3Q5R1E6 Cacfd1-204ENSMUST00000114006 1648 ntAPPRIS P1 TSL 1 (best) BASIC19.42■□□□□ 0.7
Trav6-3Q5R1E6 Maz-204ENSMUST00000206254 2282 ntTSL 5 BASIC19.41■□□□□ 0.7
Trav6-3Q5R1E6 Zfp422-201ENSMUST00000057540 2375 ntAPPRIS P1 TSL 1 (best) BASIC19.41■□□□□ 0.7
Trav6-3Q5R1E6 Ssbp4-205ENSMUST00000210369 1828 ntTSL 2 BASIC19.41■□□□□ 0.7
Trav6-3Q5R1E6 Fus-201ENSMUST00000077609 1831 ntAPPRIS ALT2 TSL 1 (best) BASIC19.41■□□□□ 0.7
Trav6-3Q5R1E6 Sugct-202ENSMUST00000220514 1351 ntTSL 1 (best) BASIC19.41■□□□□ 0.7
Trav6-3Q5R1E6 Tmeff1-202ENSMUST00000123476 1224 ntAPPRIS P1 TSL 1 (best) BASIC19.4■□□□□ 0.7
Trav6-3Q5R1E6 Fam120a-201ENSMUST00000060805 5105 ntAPPRIS P1 TSL 1 (best) BASIC19.39■□□□□ 0.69
Trav6-3Q5R1E6 Ankrd28-201ENSMUST00000014640 6712 ntAPPRIS P2 TSL 1 (best) BASIC19.38■□□□□ 0.69
Trav6-3Q5R1E6 Amigo1-203ENSMUST00000106659 1360 ntTSL 1 (best) BASIC19.38■□□□□ 0.69
Trav6-3Q5R1E6 E2f6-201ENSMUST00000020908 2418 ntAPPRIS P1 TSL 1 (best) BASIC19.38■□□□□ 0.69
Trav6-3Q5R1E6 Cited2-203ENSMUST00000219558 2411 ntAPPRIS P1 BASIC19.37■□□□□ 0.69
Trav6-3Q5R1E6 CT030161.2-201ENSMUST00000218666 735 ntTSL 3 BASIC19.37■□□□□ 0.69
Trav6-3Q5R1E6 Gnaq-201ENSMUST00000025541 5644 ntAPPRIS P1 TSL 1 (best) BASIC19.37■□□□□ 0.69
Trav6-3Q5R1E6 Zswim6-201ENSMUST00000105097 5456 ntTSL 5 BASIC19.37■□□□□ 0.69
Trav6-3Q5R1E6 Sox3-201ENSMUST00000135107 2065 ntAPPRIS P1 BASIC19.37■□□□□ 0.69
Trav6-3Q5R1E6 Tsg101-201ENSMUST00000014546 1949 ntAPPRIS P1 TSL 1 (best) BASIC19.36■□□□□ 0.69
Trav6-3Q5R1E6 Srsf9-201ENSMUST00000031513 1162 ntAPPRIS P1 TSL 1 (best) BASIC19.36■□□□□ 0.69
Trav6-3Q5R1E6 Mapk1-203ENSMUST00000115731 1747 ntAPPRIS P1 TSL 1 (best) BASIC19.36■□□□□ 0.69
Trav6-3Q5R1E6 St7-208ENSMUST00000115419 2194 ntTSL 1 (best) BASIC19.36■□□□□ 0.69
Trav6-3Q5R1E6 Fbxo6-201ENSMUST00000030858 1346 ntAPPRIS P1 TSL 1 (best) BASIC19.34■□□□□ 0.69
Trav6-3Q5R1E6 Ryk-201ENSMUST00000035142 2852 ntAPPRIS ALT2 TSL 1 (best) BASIC19.34■□□□□ 0.69
Trav6-3Q5R1E6 Slc39a13-201ENSMUST00000073575 2469 ntAPPRIS P1 TSL 1 (best) BASIC19.34■□□□□ 0.69
Trav6-3Q5R1E6 2210008F06Rik-201ENSMUST00000180805 1082 ntTSL 1 (best) BASIC19.33■□□□□ 0.68
Trav6-3Q5R1E6 Sh3rf1-201ENSMUST00000034060 5479 ntAPPRIS P1 TSL 1 (best) BASIC19.33■□□□□ 0.68
Trav6-3Q5R1E6 Paqr3-202ENSMUST00000112968 1875 ntTSL 1 (best) BASIC19.33■□□□□ 0.68
Trav6-3Q5R1E6 Gxylt1-202ENSMUST00000057896 1891 ntAPPRIS ALT2 TSL 5 BASIC19.33■□□□□ 0.68
Trav6-3Q5R1E6 Twist1-201ENSMUST00000049089 1628 ntAPPRIS P1 TSL 1 (best) BASIC19.33■□□□□ 0.68
Trav6-3Q5R1E6 Clk2-202ENSMUST00000121212 2154 ntAPPRIS P3 TSL 1 (best) BASIC19.32■□□□□ 0.68
Trav6-3Q5R1E6 Itpka-201ENSMUST00000028758 1818 ntAPPRIS P1 TSL 1 (best) BASIC19.32■□□□□ 0.68
Trav6-3Q5R1E6 Maf-201ENSMUST00000069009 3223 ntAPPRIS ALT2 TSL 1 (best) BASIC19.32■□□□□ 0.68
Trav6-3Q5R1E6 Frat2-201ENSMUST00000059231 2161 ntAPPRIS P1 BASIC19.32■□□□□ 0.68
Trav6-3Q5R1E6 E2f5-202ENSMUST00000165922 1751 ntAPPRIS ALT2 TSL 5 BASIC19.31■□□□□ 0.68
Trav6-3Q5R1E6 Arhgdia-201ENSMUST00000067936 2150 ntAPPRIS P1 TSL 1 (best) BASIC19.3■□□□□ 0.68
Trav6-3Q5R1E6 Ebf4-203ENSMUST00000110288 2982 ntAPPRIS ALT2 TSL 5 BASIC19.3■□□□□ 0.68
Trav6-3Q5R1E6 Yars2-201ENSMUST00000059955 1574 ntAPPRIS P1 TSL 1 (best) BASIC19.29■□□□□ 0.68
Trav6-3Q5R1E6 Rnf19b-201ENSMUST00000030584 2414 ntAPPRIS ALT2 TSL 5 BASIC19.29■□□□□ 0.68
Trav6-3Q5R1E6 Bin1-202ENSMUST00000091967 2118 ntAPPRIS ALT2 TSL 1 (best) BASIC19.29■□□□□ 0.68
Trav6-3Q5R1E6 Maz-201ENSMUST00000032916 2347 ntTSL 1 (best) BASIC19.29■□□□□ 0.68
Trav6-3Q5R1E6 Eif2ak3-204ENSMUST00000162950 927 ntTSL 1 (best) BASIC19.28■□□□□ 0.68
Trav6-3Q5R1E6 Maz-202ENSMUST00000205461 796 ntTSL 5 BASIC19.28■□□□□ 0.68
Trav6-3Q5R1E6 Gm10762-201ENSMUST00000099385 1133 ntAPPRIS P1 BASIC19.28■□□□□ 0.68
Trav6-3Q5R1E6 Babam2-209ENSMUST00000201352 1888 ntAPPRIS P1 TSL 1 (best) BASIC19.28■□□□□ 0.68
Trav6-3Q5R1E6 Cpsf4-201ENSMUST00000070487 1606 ntTSL 1 (best) BASIC19.28■□□□□ 0.68
Trav6-3Q5R1E6 Il3ra-201ENSMUST00000090591 1614 ntAPPRIS P2 TSL 1 (best) BASIC19.28■□□□□ 0.68
Trav6-3Q5R1E6 Fgf20-201ENSMUST00000034014 1476 ntAPPRIS P1 TSL 1 (best) BASIC19.28■□□□□ 0.68
Trav6-3Q5R1E6 Zfp91-201ENSMUST00000038627 5531 ntAPPRIS P1 TSL 1 (best) BASIC19.27■□□□□ 0.68
Trav6-3Q5R1E6 Preb-209ENSMUST00000202567 1869 ntTSL 1 (best) BASIC19.27■□□□□ 0.68
Trav6-3Q5R1E6 Ica1-201ENSMUST00000038403 2075 ntAPPRIS P2 TSL 1 (best) BASIC19.27■□□□□ 0.68
Trav6-3Q5R1E6 AC153890.1-201ENSMUST00000220021 2469 ntBASIC19.27■□□□□ 0.67
Trav6-3Q5R1E6 Dazap1-202ENSMUST00000105361 1537 ntAPPRIS ALT1 TSL 1 (best) BASIC19.26■□□□□ 0.67
Trav6-3Q5R1E6 Cpe-201ENSMUST00000048967 2117 ntAPPRIS P1 TSL 1 (best) BASIC19.26■□□□□ 0.67
Trav6-3Q5R1E6 Syndig1l-204ENSMUST00000222422 1758 ntAPPRIS P1 TSL 1 (best) BASIC19.26■□□□□ 0.67
Trav6-3Q5R1E6 Msto1-202ENSMUST00000126245 1875 ntAPPRIS P1 TSL 1 (best) BASIC19.26■□□□□ 0.67
Trav6-3Q5R1E6 E2f1-201ENSMUST00000000894 2755 ntAPPRIS ALT2 TSL 1 (best) BASIC19.26■□□□□ 0.67
Trav6-3Q5R1E6 Ei24-202ENSMUST00000163192 2309 ntAPPRIS P1 TSL 1 (best) BASIC19.25■□□□□ 0.67
Trav6-3Q5R1E6 Fam3c-201ENSMUST00000081288 1487 ntTSL 1 (best) BASIC19.25■□□□□ 0.67
Trav6-3Q5R1E6 Plin1-206ENSMUST00000205915 2817 ntAPPRIS P1 TSL 1 (best) BASIC19.25■□□□□ 0.67
Trav6-3Q5R1E6 Peg12-201ENSMUST00000094339 2640 ntAPPRIS P1 BASIC19.25■□□□□ 0.67
Trav6-3Q5R1E6 Rnf115-201ENSMUST00000029740 2209 ntAPPRIS P1 TSL 1 (best) BASIC19.24■□□□□ 0.67
Trav6-3Q5R1E6 5031425E22Rik-201ENSMUST00000101522 2110 ntBASIC19.24■□□□□ 0.67
Trav6-3Q5R1E6 Eid2-201ENSMUST00000059596 1392 ntAPPRIS P1 BASIC19.24■□□□□ 0.67
Trav6-3Q5R1E6 Nelfe-201ENSMUST00000097343 1607 ntAPPRIS P1 TSL 5 BASIC19.24■□□□□ 0.67
Trav6-3Q5R1E6 Ablim1-208ENSMUST00000111544 2231 ntTSL 5 BASIC19.23■□□□□ 0.67
Trav6-3Q5R1E6 Gpr12-201ENSMUST00000036211 2219 ntAPPRIS P1 TSL 1 (best) BASIC19.23■□□□□ 0.67
Trav6-3Q5R1E6 Nans-201ENSMUST00000030018 2179 ntAPPRIS P1 TSL 1 (best) BASIC19.23■□□□□ 0.67
Trav6-3Q5R1E6 Mpp6-209ENSMUST00000204545 2418 ntAPPRIS P1 TSL 5 BASIC19.23■□□□□ 0.67
Trav6-3Q5R1E6 Gm960-204ENSMUST00000225896 2202 ntAPPRIS ALT2 BASIC19.22■□□□□ 0.67
Trav6-3Q5R1E6 March2-205ENSMUST00000173015 1418 ntTSL 3 BASIC19.22■□□□□ 0.67
Retrieved 100 of 76,532 protein–RNA pairs in 60.8 ms