Protein–RNA interactions for Protein: Q00780

Col8a1, Collagen alpha-1(VIII) chain, mousemouse

Predictions only

Length 744 aa.

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Protein RNA Prediction (catRAPID) Interaction (Experimental data)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
Col8a1Q00780 Mtor-201ENSMUST00000057580 1003 ntTSL 1 (best) BASIC20.92■□□□□ 0.94
Col8a1Q00780 Suds3-202ENSMUST00000166397 1694 ntAPPRIS ALT2 TSL 1 (best) BASIC20.91■□□□□ 0.94
Col8a1Q00780 Otulin-201ENSMUST00000059662 1491 ntAPPRIS P1 TSL 1 (best) BASIC20.9■□□□□ 0.94
Col8a1Q00780 Snx3-201ENSMUST00000019939 1401 ntAPPRIS P1 TSL 1 (best) BASIC20.89■□□□□ 0.94
Col8a1Q00780 Tmem200b-201ENSMUST00000094666 1370 ntAPPRIS P1 BASIC20.89■□□□□ 0.93
Col8a1Q00780 Ldb1-207ENSMUST00000156585 2014 ntTSL 1 (best) BASIC20.89■□□□□ 0.93
Col8a1Q00780 Rpl38-203ENSMUST00000106599 457 ntAPPRIS P1 TSL 1 (best) BASIC20.89■□□□□ 0.93
Col8a1Q00780 Eif4e2-204ENSMUST00000113231 1119 ntTSL 1 (best) BASIC20.89■□□□□ 0.93
Col8a1Q00780 Znrf1-207ENSMUST00000173506 1238 ntAPPRIS P1 TSL 2 BASIC20.89■□□□□ 0.93
Col8a1Q00780 Rundc3a-201ENSMUST00000006750 2046 ntAPPRIS P2 TSL 1 (best) BASIC20.88■□□□□ 0.93
Col8a1Q00780 Cebpb-201ENSMUST00000070642 1504 ntAPPRIS P1 BASIC20.88■□□□□ 0.93
Col8a1Q00780 Dnajc19-202ENSMUST00000108195 659 ntAPPRIS P1 TSL 1 (best) BASIC20.87■□□□□ 0.93
Col8a1Q00780 Gm19582-201ENSMUST00000187511 841 ntTSL 2 BASIC20.87■□□□□ 0.93
Col8a1Q00780 Tceal3-201ENSMUST00000060904 1116 ntAPPRIS P1 TSL 1 (best) BASIC20.87■□□□□ 0.93
Col8a1Q00780 Ccnyl1-203ENSMUST00000187170 1506 ntAPPRIS P1 TSL 5 BASIC20.87■□□□□ 0.93
Col8a1Q00780 Rundc3a-203ENSMUST00000107103 1822 ntTSL 5 BASIC20.87■□□□□ 0.93
Col8a1Q00780 Rbmxl2-201ENSMUST00000098135 1472 ntAPPRIS P1 BASIC20.86■□□□□ 0.93
Col8a1Q00780 Fkbp8-202ENSMUST00000119353 1720 ntAPPRIS ALT2 TSL 1 (best) BASIC20.85■□□□□ 0.93
Col8a1Q00780 Sec63-201ENSMUST00000019937 6032 ntAPPRIS P1 TSL 1 (best) BASIC20.85■□□□□ 0.93
Col8a1Q00780 Gm28529-202ENSMUST00000189675 670 ntTSL 2 BASIC20.85■□□□□ 0.93
Col8a1Q00780 Dctpp1-201ENSMUST00000035276 676 ntAPPRIS P1 TSL 1 (best) BASIC20.85■□□□□ 0.93
Col8a1Q00780 Gjd3-201ENSMUST00000062931 837 ntAPPRIS P1 BASIC20.85■□□□□ 0.93
Col8a1Q00780 Fank1-204ENSMUST00000209511 1392 ntTSL 5 BASIC20.85■□□□□ 0.93
Col8a1Q00780 Hnrnpa0-201ENSMUST00000007980 2678 ntAPPRIS P1 BASIC20.83■□□□□ 0.93
Col8a1Q00780 Raly-204ENSMUST00000116389 1759 ntAPPRIS ALT2 TSL 5 BASIC20.83■□□□□ 0.93
Col8a1Q00780 Gm16764-201ENSMUST00000138891 541 ntTSL 5 BASIC20.83■□□□□ 0.93
Col8a1Q00780 Paqr6-203ENSMUST00000147948 837 ntTSL 2 BASIC20.83■□□□□ 0.93
Col8a1Q00780 Gm44957-202ENSMUST00000205137 448 ntTSL 3 BASIC20.83■□□□□ 0.93
Col8a1Q00780 Msi2-202ENSMUST00000107908 695 ntTSL 5 BASIC20.82■□□□□ 0.92
Col8a1Q00780 AC117232.3-201ENSMUST00000217817 338 ntTSL 2 BASIC20.82■□□□□ 0.92
Col8a1Q00780 AC167019.3-201ENSMUST00000228225 1266 ntBASIC20.82■□□□□ 0.92
Col8a1Q00780 Tgfbr1-205ENSMUST00000126171 1829 ntTSL 5 BASIC20.81■□□□□ 0.92
Col8a1Q00780 Efhd1os-201ENSMUST00000138844 332 ntTSL 3 BASIC20.81■□□□□ 0.92
Col8a1Q00780 Unc119-203ENSMUST00000108295 1371 ntTSL 3 BASIC20.81■□□□□ 0.92
Col8a1Q00780 Cabp1-204ENSMUST00000112113 1621 ntTSL 1 (best) BASIC20.79■□□□□ 0.92
Col8a1Q00780 Nectin3-203ENSMUST00000096052 1746 ntAPPRIS ALT2 TSL 1 (best) BASIC20.79■□□□□ 0.92
Col8a1Q00780 Tsen34-201ENSMUST00000038521 1365 ntAPPRIS P1 TSL 5 BASIC20.79■□□□□ 0.92
Col8a1Q00780 AC131739.1-201ENSMUST00000221692 1245 ntBASIC20.78■□□□□ 0.92
Col8a1Q00780 Gm30346-201ENSMUST00000218641 1699 ntBASIC20.77■□□□□ 0.92
Col8a1Q00780 Tlx3-201ENSMUST00000037746 1533 ntAPPRIS P1 TSL 1 (best) BASIC20.77■□□□□ 0.92
Col8a1Q00780 Raly-203ENSMUST00000109701 1709 ntAPPRIS P3 TSL 1 (best) BASIC20.76■□□□□ 0.91
Col8a1Q00780 Gm15039-201ENSMUST00000118914 875 ntBASIC20.76■□□□□ 0.91
Col8a1Q00780 Card19-201ENSMUST00000048946 804 ntAPPRIS P1 TSL 1 (best) BASIC20.76■□□□□ 0.91
Col8a1Q00780 Gm6345-201ENSMUST00000180378 1691 ntBASIC20.75■□□□□ 0.91
Col8a1Q00780 Eva1b-202ENSMUST00000106150 1144 ntAPPRIS P1 TSL 1 (best) BASIC20.75■□□□□ 0.91
Col8a1Q00780 Gm8098-201ENSMUST00000146985 1499 ntTSL 1 (best) BASIC20.75■□□□□ 0.91
Col8a1Q00780 Vegfa-211ENSMUST00000167860 975 ntTSL 1 (best) BASIC20.74■□□□□ 0.91
Col8a1Q00780 Dapk3-202ENSMUST00000178422 1730 ntAPPRIS P1 TSL 1 (best) BASIC20.74■□□□□ 0.91
Col8a1Q00780 Vegfa-212ENSMUST00000214739 1107 ntAPPRIS ALT2 TSL 1 (best) BASIC20.74■□□□□ 0.91
Col8a1Q00780 Vegfa-213ENSMUST00000217017 1179 ntAPPRIS P4 TSL 1 (best) BASIC20.74■□□□□ 0.91
Col8a1Q00780 Fam89a-201ENSMUST00000055257 1338 ntAPPRIS P1 TSL 1 (best) BASIC20.74■□□□□ 0.91
Col8a1Q00780 Tlx2-202ENSMUST00000174674 1514 ntTSL 1 (best) BASIC20.73■□□□□ 0.91
Col8a1Q00780 Gm26859-201ENSMUST00000181743 1852 ntTSL 5 BASIC20.73■□□□□ 0.91
Col8a1Q00780 Gna13-202ENSMUST00000106702 914 ntTSL 1 (best) BASIC20.73■□□□□ 0.91
Col8a1Q00780 Gm28513-201ENSMUST00000191474 613 ntTSL 3 BASIC20.73■□□□□ 0.91
Col8a1Q00780 Pm20d2-202ENSMUST00000119167 1339 ntTSL 1 (best) BASIC20.73■□□□□ 0.91
Col8a1Q00780 Ptpn18-206ENSMUST00000188972 414 ntTSL 1 (best) BASIC20.72■□□□□ 0.91
Col8a1Q00780 Rab26-202ENSMUST00000061764 1291 ntTSL 2 BASIC20.71■□□□□ 0.91
Col8a1Q00780 St3gal5-201ENSMUST00000069994 2258 ntAPPRIS P3 TSL 1 (best) BASIC20.7■□□□□ 0.9
Col8a1Q00780 Izumo4-205ENSMUST00000218184 1196 ntAPPRIS P1 TSL 2 BASIC20.7■□□□□ 0.9
Col8a1Q00780 Cox4i1-205ENSMUST00000181586 765 ntAPPRIS P1 TSL 1 (best) BASIC20.69■□□□□ 0.9
Col8a1Q00780 Gm45051-201ENSMUST00000206838 963 ntTSL 1 (best) BASIC20.69■□□□□ 0.9
Col8a1Q00780 Rheb-201ENSMUST00000030787 1784 ntAPPRIS P1 TSL 1 (best) BASIC20.67■□□□□ 0.9
Col8a1Q00780 Ppp2r2d-201ENSMUST00000041097 2081 ntAPPRIS P1 TSL 1 (best) BASIC20.67■□□□□ 0.9
Col8a1Q00780 Eci1-201ENSMUST00000024946 1091 ntAPPRIS P1 TSL 1 (best) BASIC20.66■□□□□ 0.9
Col8a1Q00780 Arpc5l-202ENSMUST00000112862 1339 ntAPPRIS P1 TSL 1 (best) BASIC20.66■□□□□ 0.9
Col8a1Q00780 Tspan3-201ENSMUST00000034876 1716 ntAPPRIS P1 TSL 1 (best) BASIC20.66■□□□□ 0.9
Col8a1Q00780 Raly-202ENSMUST00000058089 1747 ntAPPRIS P3 TSL 1 (best) BASIC20.65■□□□□ 0.9
Col8a1Q00780 Rnaseh2c-201ENSMUST00000025864 1126 ntAPPRIS P1 TSL 1 (best) BASIC20.65■□□□□ 0.9
Col8a1Q00780 Mon2-207ENSMUST00000219203 1844 ntTSL 1 (best) BASIC20.64■□□□□ 0.9
Col8a1Q00780 Snx3-203ENSMUST00000105500 753 ntTSL 5 BASIC20.64■□□□□ 0.89
Col8a1Q00780 Gm43573-201ENSMUST00000196445 570 ntTSL 5 BASIC20.64■□□□□ 0.89
Col8a1Q00780 1700020L24Rik-201ENSMUST00000037378 949 ntAPPRIS P1 TSL 1 (best) BASIC20.64■□□□□ 0.89
Col8a1Q00780 Ildr2-207ENSMUST00000195557 1947 ntAPPRIS ALT2 TSL 1 (best) BASIC20.64■□□□□ 0.89
Col8a1Q00780 Nelfe-202ENSMUST00000165953 1381 ntAPPRIS P1 TSL 1 (best) BASIC20.63■□□□□ 0.89
Col8a1Q00780 Rps2-ps13-201ENSMUST00000117295 882 ntBASIC20.63■□□□□ 0.89
Col8a1Q00780 Sike1-202ENSMUST00000119450 774 ntTSL 3 BASIC20.63■□□□□ 0.89
Col8a1Q00780 Gm12366-201ENSMUST00000121722 873 ntBASIC20.63■□□□□ 0.89
Col8a1Q00780 Rps2-206ENSMUST00000146867 962 ntTSL 5 BASIC20.63■□□□□ 0.89
Col8a1Q00780 Rps2-ps10-201ENSMUST00000076842 879 ntBASIC20.63■□□□□ 0.89
Col8a1Q00780 Gm5786-201ENSMUST00000085368 882 ntBASIC20.63■□□□□ 0.89
Col8a1Q00780 Rhobtb3-202ENSMUST00000109606 1676 ntTSL 1 (best) BASIC20.63■□□□□ 0.89
Col8a1Q00780 Ppa2-203ENSMUST00000122334 1368 ntAPPRIS ALT2 TSL 1 (best) BASIC20.62■□□□□ 0.89
Col8a1Q00780 Klhl15-202ENSMUST00000113908 1235 ntTSL 1 (best) BASIC20.62■□□□□ 0.89
Col8a1Q00780 Gli3-204ENSMUST00000141194 466 ntTSL 2 BASIC20.62■□□□□ 0.89
Col8a1Q00780 Scarna2-201ENSMUST00000157560 414 ntBASIC20.62■□□□□ 0.89
Col8a1Q00780 Ddrgk1-201ENSMUST00000089559 1238 ntAPPRIS P1 TSL 1 (best) BASIC20.62■□□□□ 0.89
Col8a1Q00780 AC125444.1-201ENSMUST00000223536 639 ntAPPRIS P1 BASIC20.61■□□□□ 0.89
Col8a1Q00780 Smagp-201ENSMUST00000066068 1132 ntAPPRIS P1 TSL 1 (best) BASIC20.61■□□□□ 0.89
Col8a1Q00780 Mrps7-201ENSMUST00000058109 1962 ntAPPRIS P1 TSL 1 (best) BASIC20.61■□□□□ 0.89
Col8a1Q00780 Gm15156-201ENSMUST00000148217 417 ntTSL 3 BASIC20.6■□□□□ 0.89
Col8a1Q00780 Mpped1-208ENSMUST00000163723 1064 ntTSL 5 BASIC20.6■□□□□ 0.89
Col8a1Q00780 Pcgf5-201ENSMUST00000062389 1566 ntTSL 5 BASIC20.59■□□□□ 0.89
Col8a1Q00780 Dlx4-201ENSMUST00000021241 2282 ntAPPRIS P1 TSL 1 (best) BASIC20.59■□□□□ 0.89
Col8a1Q00780 Fam3c-201ENSMUST00000081288 1487 ntTSL 1 (best) BASIC20.59■□□□□ 0.89
Col8a1Q00780 Fus-204ENSMUST00000121616 1102 ntTSL 1 (best) BASIC20.59■□□□□ 0.89
Col8a1Q00780 Tmeff1-201ENSMUST00000030032 2461 ntAPPRIS P1 TSL 1 (best) BASIC20.58■□□□□ 0.89
Col8a1Q00780 1810049J17Rik-201ENSMUST00000180521 462 ntAPPRIS P1 BASIC20.58■□□□□ 0.89
Col8a1Q00780 Fbl-201ENSMUST00000042405 1197 ntAPPRIS P1 TSL 1 (best) BASIC20.58■□□□□ 0.89
Col8a1Q00780 Ltb4r1-201ENSMUST00000057569 1394 ntAPPRIS P1 TSL 1 (best) BASIC20.57■□□□□ 0.88
Retrieved 100 of 76,532 protein–RNA pairs in 63.4 ms