Protein–RNA interactions for Protein: P49711

CTCF, Transcriptional repressor CTCF, humanhuman

Predicted RBP Predictions only

Length 727 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
CTCFP49711 AGO3-204ENST00000397828 1035 ntTSL 2 BASIC31.33■■■□□ 2.61
CTCFP49711 CEP120-209ENST00000515110 606 ntTSL 3 BASIC31.33■■■□□ 2.61
CTCFP49711 RPS20-211ENST00000524349 752 ntTSL 1 (best) BASIC31.33■■■□□ 2.61
CTCFP49711 MDFIC-208ENST00000614186 1068 ntTSL 1 (best) BASIC31.33■■■□□ 2.61
CTCFP49711 LIME1-206ENST00000487026 805 ntAPPRIS ALT2 TSL 5 BASIC31.32■■■□□ 2.6
CTCFP49711 RHOC-202ENST00000339083 1418 ntAPPRIS P1 TSL 1 (best) BASIC31.32■■■□□ 2.6
CTCFP49711 SCX-201ENST00000567180 999 ntAPPRIS P1 TSL 1 (best) BASIC31.31■■■□□ 2.6
CTCFP49711 AC138207.2-201ENST00000583377 492 ntTSL 2 BASIC31.31■■■□□ 2.6
CTCFP49711 MAD2L2-207ENST00000376692 1118 ntAPPRIS P1 TSL 1 (best) BASIC31.28■■■□□ 2.6
CTCFP49711 MANF-204ENST00000528157 1153 ntAPPRIS P1 TSL 1 (best) BASIC31.28■■■□□ 2.6
CTCFP49711 C11orf95-204ENST00000546282 390 ntTSL 3 BASIC31.28■■■□□ 2.6
CTCFP49711 KCTD17-201ENST00000402077 1691 ntAPPRIS P3 TSL 1 (best) BASIC31.28■■■□□ 2.6
CTCFP49711 C1orf122-201ENST00000373042 973 ntAPPRIS P3 TSL 1 (best) BASIC31.26■■■□□ 2.59
CTCFP49711 QDPR-201ENST00000281243 1648 ntAPPRIS P1 TSL 1 (best) BASIC31.26■■■□□ 2.59
CTCFP49711 GNB5-202ENST00000358784 1735 ntAPPRIS ALT1 TSL 1 (best) BASIC31.26■■■□□ 2.59
CTCFP49711 CHML-204ENST00000638121 920 ntTSL 2 BASIC31.24■■■□□ 2.59
CTCFP49711 HAPLN2-201ENST00000255039 1771 ntAPPRIS P1 TSL 1 (best) BASIC31.24■■■□□ 2.59
CTCFP49711 AL592295.1-201ENST00000400984 884 ntBASIC31.23■■■□□ 2.59
CTCFP49711 AC004837.3-201ENST00000420748 565 ntTSL 4 BASIC31.23■■■□□ 2.59
CTCFP49711 CYP26C1-201ENST00000285949 1569 ntAPPRIS P1 TSL 1 (best) BASIC31.22■■■□□ 2.59
CTCFP49711 CTXN1-201ENST00000318978 1274 ntAPPRIS P1 TSL 1 (best) BASIC31.22■■■□□ 2.59
CTCFP49711 POLR1D-201ENST00000302979 1166 ntAPPRIS P2 TSL 1 (best) BASIC31.21■■■□□ 2.59
CTCFP49711 TXNL4A-208ENST00000588162 752 ntTSL 2 BASIC31.2■■■□□ 2.59
CTCFP49711 MMP28-203ENST00000612672 1092 ntTSL 1 (best) BASIC31.2■■■□□ 2.59
CTCFP49711 RUNX2-211ENST00000625924 1458 ntAPPRIS ALT2 TSL 1 (best) BASIC31.2■■■□□ 2.58
CTCFP49711 MTURN-203ENST00000409688 843 ntTSL 2 BASIC31.19■■■□□ 2.58
CTCFP49711 RARRES2P1-201ENST00000474487 481 ntBASIC31.19■■■□□ 2.58
CTCFP49711 FAM168B-201ENST00000389915 944 ntAPPRIS P1 TSL 3 BASIC31.18■■■□□ 2.58
CTCFP49711 QDPR-208ENST00000513615 1188 ntTSL 2 BASIC31.18■■■□□ 2.58
CTCFP49711 AC092902.2-221ENST00000628476 965 ntTSL 5 BASIC31.18■■■□□ 2.58
CTCFP49711 C2orf88-204ENST00000409870 1441 ntAPPRIS P1 TSL 2 BASIC31.17■■■□□ 2.58
CTCFP49711 BANF1-208ENST00000533166 1135 ntAPPRIS P1 TSL 2 BASIC31.16■■■□□ 2.58
CTCFP49711 AKR1E2-201ENST00000298375 1566 ntAPPRIS P1 TSL 1 (best) BASIC31.15■■■□□ 2.58
CTCFP49711 LINC01770-201ENST00000417917 634 ntTSL 2 BASIC31.14■■■□□ 2.58
CTCFP49711 AL590677.1-201ENST00000438431 380 ntTSL 5 BASIC31.13■■■□□ 2.57
CTCFP49711 DTNBP1-202ENST00000344537 1403 ntAPPRIS P1 TSL 1 (best) BASIC31.13■■■□□ 2.57
CTCFP49711 DBP-205ENST00000601104 1489 ntTSL 1 (best) BASIC31.13■■■□□ 2.57
CTCFP49711 HES4-202ENST00000428771 1040 ntTSL 2 BASIC31.11■■■□□ 2.57
CTCFP49711 LMO2-202ENST00000395833 1687 ntAPPRIS P1 TSL 1 (best) BASIC31.1■■■□□ 2.57
CTCFP49711 LYSMD2-202ENST00000454181 1228 ntTSL 1 (best) BASIC31.1■■■□□ 2.57
CTCFP49711 CLTA-207ENST00000470744 1102 ntTSL 2 BASIC31.08■■■□□ 2.57
CTCFP49711 AC022413.1-201ENST00000624602 984 ntBASIC31.08■■■□□ 2.57
CTCFP49711 CHMP4B-201ENST00000217402 1646 ntAPPRIS P1 TSL 1 (best) BASIC31.08■■■□□ 2.57
CTCFP49711 CGREF1-204ENST00000402550 1575 ntTSL 2 BASIC31.08■■■□□ 2.57
CTCFP49711 GFER-205ENST00000569451 517 ntTSL 5 BASIC31.07■■■□□ 2.56
CTCFP49711 MZT2B-201ENST00000281871 933 ntAPPRIS P3 TSL 1 (best) BASIC31.06■■■□□ 2.56
CTCFP49711 MZT2A-201ENST00000309451 624 ntAPPRIS P1 TSL 1 (best) BASIC31.06■■■□□ 2.56
CTCFP49711 AC073111.5-206ENST00000642087 859 ntAPPRIS P1 BASIC31.06■■■□□ 2.56
CTCFP49711 PXMP2-201ENST00000317479 957 ntAPPRIS P1 TSL 1 (best) BASIC31.05■■■□□ 2.56
CTCFP49711 TRIM52-AS1-202ENST00000507434 672 ntTSL 1 (best) BASIC31.05■■■□□ 2.56
CTCFP49711 ATP8B2-201ENST00000368487 1523 ntTSL 1 (best) BASIC31.04■■■□□ 2.56
CTCFP49711 PXMP2-205ENST00000543589 632 ntTSL 3 BASIC31.04■■■□□ 2.56
CTCFP49711 TSPY13P-201ENST00000338964 914 ntBASIC31.03■■■□□ 2.56
CTCFP49711 RNF150-204ENST00000507500 1530 ntTSL 1 (best) BASIC31.02■■■□□ 2.56
CTCFP49711 RUNX2-203ENST00000371436 1588 ntAPPRIS ALT2 TSL 5 BASIC31.01■■■□□ 2.56
CTCFP49711 B4GALT2-203ENST00000372324 2203 ntAPPRIS P1 TSL 1 (best) BASIC31.01■■■□□ 2.56
CTCFP49711 INO80B-WBP1-202ENST00000452361 2040 ntAPPRIS P5 TSL 2 BASIC31■■■□□ 2.55
CTCFP49711 AP000251.1-201ENST00000433071 822 ntTSL 1 (best) BASIC31■■■□□ 2.55
CTCFP49711 CHST11-202ENST00000546689 756 ntTSL 2 BASIC31■■■□□ 2.55
CTCFP49711 KLC2-205ENST00000394078 1557 ntTSL 5 BASIC30.98■■■□□ 2.55
CTCFP49711 CCDC37-AS1-202ENST00000506660 986 ntTSL 1 (best) BASIC30.98■■■□□ 2.55
CTCFP49711 NPW-202ENST00000566435 991 ntAPPRIS ALT2 TSL 1 (best) BASIC30.98■■■□□ 2.55
CTCFP49711 HOMER3-207ENST00000594794 903 ntTSL 5 BASIC30.98■■■□□ 2.55
CTCFP49711 U85056.1-201ENST00000616429 682 ntBASIC30.98■■■□□ 2.55
CTCFP49711 TSR3-201ENST00000007390 1243 ntAPPRIS P1 TSL 1 (best) BASIC30.98■■■□□ 2.55
CTCFP49711 HSD17B12-202ENST00000395700 994 ntTSL 1 (best) BASIC30.96■■■□□ 2.55
CTCFP49711 PABPN1-201ENST00000216727 2001 ntAPPRIS P2 TSL 1 (best) BASIC30.95■■■□□ 2.55
CTCFP49711 CACNG6-201ENST00000252729 1853 ntAPPRIS P1 TSL 1 (best) BASIC30.93■■■□□ 2.54
CTCFP49711 DSG2-202ENST00000585206 1081 ntTSL 2 BASIC30.93■■■□□ 2.54
CTCFP49711 PRRX2-201ENST00000372469 1311 ntAPPRIS P1 TSL 1 (best) BASIC30.93■■■□□ 2.54
CTCFP49711 MAPK3-201ENST00000263025 1861 ntAPPRIS P3 TSL 1 (best) BASIC30.93■■■□□ 2.54
CTCFP49711 S1PR4-201ENST00000246115 1565 ntAPPRIS P1 BASIC30.92■■■□□ 2.54
CTCFP49711 BAX-202ENST00000345358 793 ntAPPRIS P1 TSL 1 (best) BASIC30.91■■■□□ 2.54
CTCFP49711 TPRG1L-201ENST00000344579 2189 ntTSL 1 (best) BASIC30.9■■■□□ 2.54
CTCFP49711 CTDNEP1-210ENST00000574322 1708 ntAPPRIS P1 TSL 1 (best) BASIC30.9■■■□□ 2.54
CTCFP49711 FAM78B-202ENST00000354422 1475 ntAPPRIS P1 TSL 2 BASIC30.9■■■□□ 2.54
CTCFP49711 TNFRSF4-201ENST00000379236 1068 ntAPPRIS P1 TSL 1 (best) BASIC30.9■■■□□ 2.54
CTCFP49711 AC004987.1-201ENST00000428627 508 ntBASIC30.9■■■□□ 2.54
CTCFP49711 KIF13A-207ENST00000502704 1330 ntTSL 1 (best) BASIC30.9■■■□□ 2.54
CTCFP49711 UBE2L6-201ENST00000287156 1354 ntAPPRIS P1 TSL 1 (best) BASIC30.9■■■□□ 2.54
CTCFP49711 MPST-201ENST00000341116 1504 ntAPPRIS P1 TSL 5 BASIC30.88■■■□□ 2.53
CTCFP49711 GUK1-208ENST00000366728 842 ntTSL 2 BASIC30.88■■■□□ 2.53
CTCFP49711 C20orf24-203ENST00000373852 1059 ntTSL 1 (best) BASIC30.88■■■□□ 2.53
CTCFP49711 MIR935-201ENST00000401179 91 ntBASIC30.88■■■□□ 2.53
CTCFP49711 ATP5G2P3-201ENST00000429083 425 ntBASIC30.88■■■□□ 2.53
CTCFP49711 AL035685.1-201ENST00000636663 812 ntBASIC30.88■■■□□ 2.53
CTCFP49711 HYI-213ENST00000583037 1322 ntTSL 5 BASIC30.88■■■□□ 2.53
CTCFP49711 STUB1-201ENST00000219548 1472 ntAPPRIS P1 TSL 1 (best) BASIC30.88■■■□□ 2.53
CTCFP49711 SERP2-201ENST00000379179 784 ntAPPRIS P1 TSL 1 (best) BASIC30.87■■■□□ 2.53
CTCFP49711 KLHL21-203ENST00000463043 667 ntTSL 5 BASIC30.86■■■□□ 2.53
CTCFP49711 HDAC3-201ENST00000305264 1959 ntAPPRIS P1 TSL 1 (best) BASIC30.85■■■□□ 2.53
CTCFP49711 TMEM114-202ENST00000568335 899 ntTSL 3 BASIC30.85■■■□□ 2.53
CTCFP49711 LINC01918-201ENST00000436841 797 ntTSL 2 BASIC30.84■■■□□ 2.53
CTCFP49711 HES4-204ENST00000484667 667 ntTSL 3 BASIC30.84■■■□□ 2.53
CTCFP49711 RAB4B-203ENST00000594800 1173 ntAPPRIS P1 TSL 5 BASIC30.83■■■□□ 2.53
CTCFP49711 CRIP2-201ENST00000329146 1857 ntAPPRIS P1 TSL 1 (best) BASIC30.82■■■□□ 2.53
CTCFP49711 RAB32-201ENST00000367495 1217 ntAPPRIS P1 TSL 1 (best) BASIC30.82■■■□□ 2.52
CTCFP49711 AC231981.1-201ENST00000450917 974 ntTSL 3 BASIC30.82■■■□□ 2.52
CTCFP49711 TRIR-205ENST00000592273 783 ntTSL 3 BASIC30.81■■■□□ 2.52
CTCFP49711 EI24-212ENST00000615917 1407 ntTSL 2 BASIC30.8■■■□□ 2.52
Retrieved 100 of 98,524 protein–RNA pairs in 32.6 ms