Protein–RNA interactions for Protein: P47902

CDX1, Homeobox protein CDX-1, humanhuman

Predicted RBP Predictions only

Length 265 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
CDX1P47902 CHML-205ENST00000638160 705 ntTSL 3 BASIC21.04■□□□□ 0.96
CDX1P47902 ACTR3B-202ENST00000377776 1566 ntTSL 1 (best) BASIC21.04■□□□□ 0.96
CDX1P47902 GIPC1-203ENST00000393033 1926 ntAPPRIS P1 TSL 1 (best) BASIC21.04■□□□□ 0.96
CDX1P47902 DCBLD1-201ENST00000296955 1979 ntAPPRIS P2 TSL 1 (best) BASIC21.03■□□□□ 0.96
CDX1P47902 FEV-201ENST00000295727 1879 ntAPPRIS P1 TSL 1 (best) BASIC21.03■□□□□ 0.96
CDX1P47902 FTCD-203ENST00000397746 1878 ntAPPRIS P1 TSL 1 (best) BASIC21.03■□□□□ 0.96
CDX1P47902 POU3F3-201ENST00000361360 3064 ntAPPRIS P1 BASIC21.03■□□□□ 0.96
CDX1P47902 FAM185A-202ENST00000413034 1179 ntAPPRIS P4 TSL 5 BASIC21.02■□□□□ 0.96
CDX1P47902 NOG-201ENST00000332822 1892 ntAPPRIS P1 BASIC21.01■□□□□ 0.95
CDX1P47902 TMEM229A-201ENST00000455783 2108 ntAPPRIS P1 BASIC21.01■□□□□ 0.95
CDX1P47902 RNF150-204ENST00000507500 1530 ntTSL 1 (best) BASIC21.01■□□□□ 0.95
CDX1P47902 TPGS1-201ENST00000359315 1114 ntAPPRIS P1 TSL 1 (best) BASIC21.01■□□□□ 0.95
CDX1P47902 MIR762-201ENST00000390236 83 ntBASIC21.01■□□□□ 0.95
CDX1P47902 RPS2P35-201ENST00000443417 897 ntBASIC21.01■□□□□ 0.95
CDX1P47902 ECI1-203ENST00000562238 948 ntTSL 1 (best) BASIC21.01■□□□□ 0.95
CDX1P47902 MIR3665-201ENST00000578708 105 ntBASIC21.01■□□□□ 0.95
CDX1P47902 HDAC3-201ENST00000305264 1959 ntAPPRIS P1 TSL 1 (best) BASIC21.01■□□□□ 0.95
CDX1P47902 HMX1-201ENST00000400677 1895 ntAPPRIS P1 TSL 1 (best) BASIC21.01■□□□□ 0.95
CDX1P47902 SSU72-201ENST00000291386 1290 ntAPPRIS P1 TSL 1 (best) BASIC21■□□□□ 0.95
CDX1P47902 AL162393.1-201ENST00000437852 946 ntBASIC21■□□□□ 0.95
CDX1P47902 ZFP90-204ENST00000564323 560 ntTSL 4 BASIC21■□□□□ 0.95
CDX1P47902 ZFP90-219ENST00000611381 695 ntTSL 1 (best) BASIC21■□□□□ 0.95
CDX1P47902 SHF-207ENST00000560540 2062 ntTSL 5 BASIC21■□□□□ 0.95
CDX1P47902 PHOX2A-201ENST00000298231 1699 ntAPPRIS P1 TSL 1 (best) BASIC20.99■□□□□ 0.95
CDX1P47902 AP003068.2-202ENST00000526623 1662 ntTSL 2 BASIC20.99■□□□□ 0.95
CDX1P47902 CREM-210ENST00000374721 2020 ntTSL 5 BASIC20.99■□□□□ 0.95
CDX1P47902 NRG1-221ENST00000614767 762 ntTSL 5 BASIC20.98■□□□□ 0.95
CDX1P47902 MFSD12-201ENST00000355415 2124 ntAPPRIS P3 TSL 1 (best) BASIC20.98■□□□□ 0.95
CDX1P47902 AC105285.1-201ENST00000500914 2036 ntTSL 1 (best) BASIC20.97■□□□□ 0.95
CDX1P47902 RCOR3-202ENST00000367006 2525 ntTSL 1 (best) BASIC20.97■□□□□ 0.95
CDX1P47902 MSANTD2-203ENST00000524950 1109 ntTSL 2 BASIC20.97■□□□□ 0.95
CDX1P47902 RTN4R-201ENST00000043402 2157 ntAPPRIS P2 TSL 1 (best) BASIC20.97■□□□□ 0.95
CDX1P47902 EMC10-202ENST00000376918 2014 ntAPPRIS ALT2 TSL 1 (best) BASIC20.96■□□□□ 0.95
CDX1P47902 ZNF775-201ENST00000329630 2257 ntAPPRIS P1 TSL 1 (best) BASIC20.95■□□□□ 0.95
CDX1P47902 KCTD17-202ENST00000403888 1763 ntAPPRIS ALT2 TSL 1 (best) BASIC20.95■□□□□ 0.94
CDX1P47902 AGFG1-205ENST00000409979 2089 ntAPPRIS ALT1 TSL 5 BASIC20.95■□□□□ 0.94
CDX1P47902 ELK4-201ENST00000289703 2118 ntTSL 1 (best) BASIC20.95■□□□□ 0.94
CDX1P47902 PGAM5-201ENST00000317555 1182 ntTSL 1 (best) BASIC20.95■□□□□ 0.94
CDX1P47902 GSTP1-202ENST00000398606 965 ntAPPRIS P1 TSL 1 (best) BASIC20.95■□□□□ 0.94
CDX1P47902 AC005559.1-201ENST00000589661 871 ntBASIC20.95■□□□□ 0.94
CDX1P47902 AC012629.2-201ENST00000606513 377 ntTSL 5 BASIC20.95■□□□□ 0.94
CDX1P47902 SKOR2-203ENST00000620245 3048 ntAPPRIS ALT2 TSL 5 BASIC20.95■□□□□ 0.94
CDX1P47902 AHSA2-201ENST00000357022 2437 ntTSL 1 (best) BASIC20.95■□□□□ 0.94
CDX1P47902 NPDC1-201ENST00000371600 2187 ntAPPRIS ALT2 TSL 1 (best) BASIC20.95■□□□□ 0.94
CDX1P47902 AC004080.1-201ENST00000523608 757 ntTSL 2 BASIC20.94■□□□□ 0.94
CDX1P47902 ABHD17A-201ENST00000250974 1630 ntTSL 1 (best) BASIC20.93■□□□□ 0.94
CDX1P47902 AC120057.4-201ENST00000624722 1615 ntBASIC20.93■□□□□ 0.94
CDX1P47902 ZBTB12-201ENST00000375527 1875 ntAPPRIS P1 TSL 1 (best) BASIC20.93■□□□□ 0.94
CDX1P47902 MTNR1A-201ENST00000307161 1289 ntAPPRIS P1 TSL 1 (best) BASIC20.93■□□□□ 0.94
CDX1P47902 WDSUB1-205ENST00000409990 1920 ntAPPRIS P1 TSL 2 BASIC20.93■□□□□ 0.94
CDX1P47902 NIT1-201ENST00000368007 1749 ntTSL 2 BASIC20.92■□□□□ 0.94
CDX1P47902 MISP3-201ENST00000269720 1424 ntAPPRIS ALT2 TSL 5 BASIC20.91■□□□□ 0.94
CDX1P47902 GFRA4-202ENST00000319242 900 ntAPPRIS P4 TSL 1 (best) BASIC20.91■□□□□ 0.94
CDX1P47902 SSBP4-202ENST00000348495 1721 ntAPPRIS ALT1 TSL 2 BASIC20.91■□□□□ 0.94
CDX1P47902 SNTB1-202ENST00000517992 2273 ntAPPRIS P1 TSL 1 (best) BASIC20.91■□□□□ 0.94
CDX1P47902 CRIP1-201ENST00000330233 1311 ntAPPRIS P1 TSL 1 (best) BASIC20.9■□□□□ 0.94
CDX1P47902 DUX4L28-201ENST00000623687 678 ntBASIC20.9■□□□□ 0.94
CDX1P47902 PEA15-201ENST00000360472 2471 ntAPPRIS P1 TSL 1 (best) BASIC20.9■□□□□ 0.94
CDX1P47902 ADGRB2-204ENST00000398542 5176 ntTSL 5 BASIC20.9■□□□□ 0.94
CDX1P47902 FLJ37453-201ENST00000317122 2473 ntTSL 2 BASIC20.89■□□□□ 0.94
CDX1P47902 HAND2-201ENST00000359562 2780 ntAPPRIS P1 TSL 1 (best) BASIC20.89■□□□□ 0.93
CDX1P47902 TAZ-205ENST00000475699 1862 ntTSL 1 (best) BASIC20.89■□□□□ 0.93
CDX1P47902 FAM57A-202ENST00000308278 2412 ntAPPRIS P1 TSL 1 (best) BASIC20.89■□□□□ 0.93
CDX1P47902 CPNE1-202ENST00000352393 2147 ntAPPRIS P1 TSL 1 (best) BASIC20.89■□□□□ 0.93
CDX1P47902 ARL8A-204ENST00000614750 1727 ntTSL 3 BASIC20.88■□□□□ 0.93
CDX1P47902 MSRB2-201ENST00000376510 1803 ntAPPRIS P1 TSL 1 (best) BASIC20.88■□□□□ 0.93
CDX1P47902 CUL4A-202ENST00000375440 2364 ntAPPRIS P1 TSL 1 (best) BASIC20.87■□□□□ 0.93
CDX1P47902 PPP1R35-201ENST00000292330 1031 ntAPPRIS P1 TSL 1 (best) BASIC20.87■□□□□ 0.93
CDX1P47902 ATRAID-201ENST00000380171 1240 ntTSL 1 (best) BASIC20.87■□□□□ 0.93
CDX1P47902 RCAN1-201ENST00000313806 2490 ntTSL 1 (best) BASIC20.87■□□□□ 0.93
CDX1P47902 KLHL35-204ENST00000539798 1936 ntAPPRIS P1 TSL 1 (best) BASIC20.86■□□□□ 0.93
CDX1P47902 HSD11B1L-209ENST00000577917 1553 ntTSL 1 (best) BASIC20.86■□□□□ 0.93
CDX1P47902 NKIRAS2-202ENST00000316082 833 ntTSL 5 BASIC20.86■□□□□ 0.93
CDX1P47902 SNAI3-AS1-204ENST00000567997 2048 ntBASIC20.86■□□□□ 0.93
CDX1P47902 LANCL3-203ENST00000614025 1469 ntTSL 2 BASIC20.86■□□□□ 0.93
CDX1P47902 AC087741.3-201ENST00000624270 1347 ntBASIC20.85■□□□□ 0.93
CDX1P47902 CMC4-202ENST00000369484 1107 ntAPPRIS P1 TSL 1 (best) BASIC20.85■□□□□ 0.93
CDX1P47902 CTU1-201ENST00000421832 2087 ntAPPRIS P1 TSL 2 BASIC20.85■□□□□ 0.93
CDX1P47902 RCC1L-205ENST00000618035 1409 ntTSL 1 (best) BASIC20.85■□□□□ 0.93
CDX1P47902 TESK1-201ENST00000336395 2421 ntAPPRIS P1 TSL 1 (best) BASIC20.85■□□□□ 0.93
CDX1P47902 KCNQ5-204ENST00000370392 1469 ntTSL 1 (best) BASIC20.84■□□□□ 0.93
CDX1P47902 RUNDC3A-201ENST00000225441 1821 ntTSL 1 (best) BASIC20.84■□□□□ 0.93
CDX1P47902 AC009097.4-201ENST00000566738 777 ntTSL 2 BASIC20.84■□□□□ 0.93
CDX1P47902 OTUD5-208ENST00000610466 2487 ntTSL 5 BASIC20.84■□□□□ 0.93
CDX1P47902 WHRN-203ENST00000374057 1718 ntTSL 2 BASIC20.84■□□□□ 0.93
CDX1P47902 BMP7-204ENST00000450594 1857 ntTSL 2 BASIC20.84■□□□□ 0.93
CDX1P47902 COX4I1-203ENST00000562336 873 ntAPPRIS P1 TSL 5 BASIC20.83■□□□□ 0.93
CDX1P47902 GTF2IP1-204ENST00000616377 2632 ntTSL 2 BASIC20.82■□□□□ 0.92
CDX1P47902 IL17D-201ENST00000304920 1861 ntAPPRIS P1 TSL 1 (best) BASIC20.82■□□□□ 0.92
CDX1P47902 BHLHE23-201ENST00000370346 1057 ntAPPRIS P1 BASIC20.82■□□□□ 0.92
CDX1P47902 BCL7B-201ENST00000223368 1975 ntAPPRIS P1 TSL 1 (best) BASIC20.82■□□□□ 0.92
CDX1P47902 DUSP14-206ENST00000617516 1537 ntAPPRIS P1 TSL 1 (best) BASIC20.82■□□□□ 0.92
CDX1P47902 PKM-204ENST00000449901 2526 ntTSL 2 BASIC20.81■□□□□ 0.92
CDX1P47902 NAA50-207ENST00000493900 962 ntAPPRIS ALT1 TSL 2 BASIC20.81■□□□□ 0.92
CDX1P47902 GNPTAB-201ENST00000299314 5701 ntAPPRIS P1 TSL 1 (best) BASIC20.81■□□□□ 0.92
CDX1P47902 TRNP1-201ENST00000522111 1958 ntAPPRIS P2 TSL 1 (best) BASIC20.81■□□□□ 0.92
CDX1P47902 FAM78B-202ENST00000354422 1475 ntAPPRIS P1 TSL 2 BASIC20.81■□□□□ 0.92
CDX1P47902 SLC9A3R2-202ENST00000432365 1564 ntTSL 1 (best) BASIC20.8■□□□□ 0.92
CDX1P47902 NMB-202ENST00000394588 1017 ntTSL 1 (best) BASIC20.8■□□□□ 0.92
CDX1P47902 RPS2-209ENST00000529806 993 ntTSL 3 BASIC20.8■□□□□ 0.92
Retrieved 100 of 98,524 protein–RNA pairs in 47.9 ms