Protein–RNA interactions for Protein: P35499

SCN4A, Sodium channel protein type 4 subunit alpha, humanhuman

Predictions only

Length 1,836 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
SCN4AP35499 GPX1-201ENST00000419349 1106 ntBASIC32.32■■■□□ 2.76
SCN4AP35499 SERINC2-201ENST00000373709 1997 ntAPPRIS P1 TSL 1 (best) BASIC32.32■■■□□ 2.76
SCN4AP35499 MAP3K8-203ENST00000375322 932 ntTSL 2 BASIC32.31■■■□□ 2.76
SCN4AP35499 AC116565.1-201ENST00000610212 2421 ntAPPRIS P1 BASIC32.3■■■□□ 2.76
SCN4AP35499 SSTR4-201ENST00000255008 1427 ntAPPRIS P1 BASIC32.29■■■□□ 2.76
SCN4AP35499 ZBTB25-202ENST00000555220 1440 ntTSL 1 (best) BASIC32.29■■■□□ 2.76
SCN4AP35499 UBA52-204ENST00000595158 743 ntAPPRIS P1 TSL 3 BASIC32.29■■■□□ 2.76
SCN4AP35499 MAPK3-205ENST00000395202 1008 ntTSL 1 (best) BASIC32.28■■■□□ 2.76
SCN4AP35499 CTDNEP1-201ENST00000318988 1549 ntAPPRIS P1 TSL 1 (best) BASIC32.27■■■□□ 2.76
SCN4AP35499 RNF130-201ENST00000261947 1766 ntTSL 1 (best) BASIC32.26■■■□□ 2.76
SCN4AP35499 CHML-204ENST00000638121 920 ntTSL 2 BASIC32.26■■■□□ 2.75
SCN4AP35499 CDKN3-202ENST00000335183 893 ntAPPRIS P2 TSL 1 (best) BASIC32.25■■■□□ 2.75
SCN4AP35499 CDKN3-211ENST00000611205 874 ntAPPRIS ALT2 TSL 5 BASIC32.25■■■□□ 2.75
SCN4AP35499 IGFBP2-201ENST00000233809 1439 ntAPPRIS P1 TSL 1 (best) BASIC32.25■■■□□ 2.75
SCN4AP35499 CBWD5-202ENST00000377384 1347 ntTSL 1 (best) BASIC32.24■■■□□ 2.75
SCN4AP35499 CTXN1-201ENST00000318978 1274 ntAPPRIS P1 TSL 1 (best) BASIC32.23■■■□□ 2.75
SCN4AP35499 PABPN1-201ENST00000216727 2001 ntAPPRIS P2 TSL 1 (best) BASIC32.23■■■□□ 2.75
SCN4AP35499 ABHD17A-201ENST00000250974 1630 ntTSL 1 (best) BASIC32.23■■■□□ 2.75
SCN4AP35499 MXD3-203ENST00000439742 1483 ntAPPRIS P1 TSL 1 (best) BASIC32.22■■■□□ 2.75
SCN4AP35499 PKIG-207ENST00000372894 1191 ntAPPRIS P1 TSL 1 (best) BASIC32.19■■■□□ 2.74
SCN4AP35499 AP000251.1-201ENST00000433071 822 ntTSL 1 (best) BASIC32.19■■■□□ 2.74
SCN4AP35499 AC012354.3-201ENST00000623734 483 ntBASIC32.19■■■□□ 2.74
SCN4AP35499 SLC9A3R2-202ENST00000432365 1564 ntTSL 1 (best) BASIC32.19■■■□□ 2.74
SCN4AP35499 GALK1-205ENST00000588479 1866 ntAPPRIS P1 TSL 1 (best) BASIC32.18■■■□□ 2.74
SCN4AP35499 AC005540.1-201ENST00000413911 919 ntTSL 3 BASIC32.17■■■□□ 2.74
SCN4AP35499 BLOC1S3-202ENST00000587722 732 ntAPPRIS P1 BASIC32.17■■■□□ 2.74
SCN4AP35499 BTBD19-203ENST00000450269 1572 ntAPPRIS P1 TSL 5 BASIC32.17■■■□□ 2.74
SCN4AP35499 RNF126P1-201ENST00000567452 1320 ntBASIC32.17■■■□□ 2.74
SCN4AP35499 NTF6A-201ENST00000591175 560 ntBASIC32.16■■■□□ 2.74
SCN4AP35499 RUNX2-211ENST00000625924 1458 ntAPPRIS ALT2 TSL 1 (best) BASIC32.15■■■□□ 2.74
SCN4AP35499 TPT1-202ENST00000379055 948 ntTSL 2 BASIC32.14■■■□□ 2.74
SCN4AP35499 EI24-212ENST00000615917 1407 ntTSL 2 BASIC32.14■■■□□ 2.73
SCN4AP35499 HNRNPUL1-221ENST00000617305 1018 ntTSL 1 (best) BASIC32.13■■■□□ 2.73
SCN4AP35499 AC231981.1-201ENST00000450917 974 ntTSL 3 BASIC32.12■■■□□ 2.73
SCN4AP35499 CPNE1-203ENST00000397442 1695 ntTSL 5 BASIC32.12■■■□□ 2.73
SCN4AP35499 SSBP4-202ENST00000348495 1721 ntAPPRIS ALT1 TSL 2 BASIC32.12■■■□□ 2.73
SCN4AP35499 ATP6V1E2-204ENST00000522587 1559 ntAPPRIS P1 TSL 3 BASIC32.1■■■□□ 2.73
SCN4AP35499 NOXA1-201ENST00000341349 1678 ntAPPRIS P1 TSL 1 (best) BASIC32.1■■■□□ 2.73
SCN4AP35499 AGO3-204ENST00000397828 1035 ntTSL 2 BASIC32.1■■■□□ 2.73
SCN4AP35499 RUNX2-203ENST00000371436 1588 ntAPPRIS ALT2 TSL 5 BASIC32.08■■■□□ 2.73
SCN4AP35499 RPS20-211ENST00000524349 752 ntTSL 1 (best) BASIC32.08■■■□□ 2.73
SCN4AP35499 C11orf96-203ENST00000617612 1294 ntAPPRIS P1 BASIC32.08■■■□□ 2.73
SCN4AP35499 GNPTAB-206ENST00000549940 1678 ntTSL 1 (best) BASIC32.08■■■□□ 2.73
SCN4AP35499 ATP8B2-201ENST00000368487 1523 ntTSL 1 (best) BASIC32.07■■■□□ 2.72
SCN4AP35499 TMEM251-202ENST00000415050 1303 ntTSL 2 BASIC32.06■■■□□ 2.72
SCN4AP35499 PTCH1-210ENST00000468211 1254 ntTSL 1 (best) BASIC32.06■■■□□ 2.72
SCN4AP35499 AC092902.2-221ENST00000628476 965 ntTSL 5 BASIC32.06■■■□□ 2.72
SCN4AP35499 ENHO-201ENST00000399775 1082 ntAPPRIS P1 TSL 2 BASIC32.05■■■□□ 2.72
SCN4AP35499 CHST11-202ENST00000546689 756 ntTSL 2 BASIC32.04■■■□□ 2.72
SCN4AP35499 MDFIC-208ENST00000614186 1068 ntTSL 1 (best) BASIC32.04■■■□□ 2.72
SCN4AP35499 AC073111.5-206ENST00000642087 859 ntAPPRIS P1 BASIC32.04■■■□□ 2.72
SCN4AP35499 AGPAT2-202ENST00000371696 1512 ntAPPRIS P1 TSL 1 (best) BASIC32.04■■■□□ 2.72
SCN4AP35499 KCNQ5-204ENST00000370392 1469 ntTSL 1 (best) BASIC32.02■■■□□ 2.72
SCN4AP35499 TWIST1-201ENST00000242261 1666 ntAPPRIS P1 TSL 1 (best) BASIC32.02■■■□□ 2.72
SCN4AP35499 LINC01918-201ENST00000436841 797 ntTSL 2 BASIC32■■■□□ 2.71
SCN4AP35499 BANF1-208ENST00000533166 1135 ntAPPRIS P1 TSL 2 BASIC32■■■□□ 2.71
SCN4AP35499 CEP120-209ENST00000515110 606 ntTSL 3 BASIC31.99■■■□□ 2.71
SCN4AP35499 TGIF1-202ENST00000343820 2076 ntAPPRIS P1 TSL 1 (best) BASIC31.99■■■□□ 2.71
SCN4AP35499 BMP7-202ENST00000395864 1746 ntTSL 5 BASIC31.98■■■□□ 2.71
SCN4AP35499 CHPT1-201ENST00000229266 1585 ntAPPRIS P2 TSL 1 (best) BASIC31.98■■■□□ 2.71
SCN4AP35499 CLTA-207ENST00000470744 1102 ntTSL 2 BASIC31.98■■■□□ 2.71
SCN4AP35499 RPRML-201ENST00000322329 1093 ntAPPRIS P1 BASIC31.97■■■□□ 2.71
SCN4AP35499 MXD3-208ENST00000513063 861 ntAPPRIS P1 TSL 5 BASIC31.97■■■□□ 2.71
SCN4AP35499 ACOT1-202ENST00000557556 1271 ntTSL 1 (best) BASIC31.96■■■□□ 2.71
SCN4AP35499 WHRN-203ENST00000374057 1718 ntTSL 2 BASIC31.95■■■□□ 2.7
SCN4AP35499 C2orf88-204ENST00000409870 1441 ntAPPRIS P1 TSL 2 BASIC31.94■■■□□ 2.7
SCN4AP35499 FAM168B-201ENST00000389915 944 ntAPPRIS P1 TSL 3 BASIC31.93■■■□□ 2.7
SCN4AP35499 ZSCAN1-202ENST00000391700 952 ntTSL 1 (best) BASIC31.93■■■□□ 2.7
SCN4AP35499 TMEM80-202ENST00000397512 1572 ntAPPRIS ALT2 TSL 1 (best) BASIC31.93■■■□□ 2.7
SCN4AP35499 C1orf122-201ENST00000373042 973 ntAPPRIS P3 TSL 1 (best) BASIC31.93■■■□□ 2.7
SCN4AP35499 NPW-202ENST00000566435 991 ntAPPRIS ALT2 TSL 1 (best) BASIC31.93■■■□□ 2.7
SCN4AP35499 S1PR4-201ENST00000246115 1565 ntAPPRIS P1 BASIC31.93■■■□□ 2.7
SCN4AP35499 RAD51-210ENST00000557850 1397 ntTSL 2 BASIC31.92■■■□□ 2.7
SCN4AP35499 PIK3R2-208ENST00000617642 1446 ntTSL 5 BASIC31.91■■■□□ 2.7
SCN4AP35499 BATF3-201ENST00000243440 980 ntAPPRIS P1 TSL 1 (best) BASIC31.91■■■□□ 2.7
SCN4AP35499 METTL24-201ENST00000338882 1119 ntAPPRIS P1 TSL 5 BASIC31.9■■■□□ 2.7
SCN4AP35499 MANF-204ENST00000528157 1153 ntAPPRIS P1 TSL 1 (best) BASIC31.89■■■□□ 2.7
SCN4AP35499 ANKRD16-201ENST00000191063 1567 ntTSL 3 BASIC31.88■■■□□ 2.69
SCN4AP35499 HES4-202ENST00000428771 1040 ntTSL 2 BASIC31.87■■■□□ 2.69
SCN4AP35499 KIF13A-207ENST00000502704 1330 ntTSL 1 (best) BASIC31.86■■■□□ 2.69
SCN4AP35499 CAPNS1-216ENST00000628306 1389 ntTSL 5 BASIC31.85■■■□□ 2.69
SCN4AP35499 LIME1-206ENST00000487026 805 ntAPPRIS ALT2 TSL 5 BASIC31.85■■■□□ 2.69
SCN4AP35499 TSR3-201ENST00000007390 1243 ntAPPRIS P1 TSL 1 (best) BASIC31.84■■■□□ 2.69
SCN4AP35499 SLC2A4RG-201ENST00000266077 1731 ntAPPRIS P1 TSL 1 (best) BASIC31.84■■■□□ 2.69
SCN4AP35499 IL1R1-201ENST00000409288 1735 ntTSL 5 BASIC31.84■■■□□ 2.69
SCN4AP35499 ZDHHC16-201ENST00000345745 1519 ntTSL 1 (best) BASIC31.84■■■□□ 2.69
SCN4AP35499 AC018358.1-201ENST00000631079 1402 ntBASIC31.84■■■□□ 2.69
SCN4AP35499 TRIM52-AS1-202ENST00000507434 672 ntTSL 1 (best) BASIC31.83■■■□□ 2.69
SCN4AP35499 HSD17B12-202ENST00000395700 994 ntTSL 1 (best) BASIC31.82■■■□□ 2.68
SCN4AP35499 AC008813.1-201ENST00000536597 885 ntBASIC31.82■■■□□ 2.68
SCN4AP35499 MYLIP-202ENST00000356840 1666 ntAPPRIS P1 TSL 1 (best) BASIC31.82■■■□□ 2.68
SCN4AP35499 PXMP2-201ENST00000317479 957 ntAPPRIS P1 TSL 1 (best) BASIC31.82■■■□□ 2.68
SCN4AP35499 AL033527.3-201ENST00000566366 1196 ntBASIC31.82■■■□□ 2.68
SCN4AP35499 LINC00273-201ENST00000539813 1452 ntBASIC31.81■■■□□ 2.68
SCN4AP35499 PCYT2-206ENST00000571105 1628 ntTSL 5 BASIC31.81■■■□□ 2.68
SCN4AP35499 AC022413.1-201ENST00000624602 984 ntBASIC31.8■■■□□ 2.68
SCN4AP35499 C1orf232-201ENST00000634842 643 ntAPPRIS P5 TSL 5 BASIC31.79■■■□□ 2.68
SCN4AP35499 BAX-202ENST00000345358 793 ntAPPRIS P1 TSL 1 (best) BASIC31.77■■■□□ 2.68
SCN4AP35499 TNFRSF4-201ENST00000379236 1068 ntAPPRIS P1 TSL 1 (best) BASIC31.77■■■□□ 2.68
SCN4AP35499 KMT2E-AS1-201ENST00000453677 736 ntTSL 3 BASIC31.77■■■□□ 2.68
Retrieved 100 of 98,524 protein–RNA pairs in 32.8 ms