Protein–RNA interactions for Protein: P28068

HLA-DMB, HLA class II histocompatibility antigen, DM beta chain, humanhuman

Predictions only

Length 263 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
HLA-DMBP28068 AGPAT2-202ENST00000371696 1512 ntAPPRIS P1 TSL 1 (best) BASIC19.88■□□□□ 0.77
HLA-DMBP28068 LGALS3-201ENST00000254301 1146 ntAPPRIS P1 TSL 1 (best) BASIC19.88■□□□□ 0.77
HLA-DMBP28068 AC136428.2-201ENST00000563187 214 ntBASIC19.88■□□□□ 0.77
HLA-DMBP28068 PELI3-203ENST00000524466 1671 ntTSL 1 (best) BASIC19.87■□□□□ 0.77
HLA-DMBP28068 TESK1-201ENST00000336395 2421 ntAPPRIS P1 TSL 1 (best) BASIC19.87■□□□□ 0.77
HLA-DMBP28068 COL13A1-203ENST00000398969 2267 ntAPPRIS ALT2 TSL 5 BASIC19.87■□□□□ 0.77
HLA-DMBP28068 FAM78B-202ENST00000354422 1475 ntAPPRIS P1 TSL 2 BASIC19.87■□□□□ 0.77
HLA-DMBP28068 GNPTAB-202ENST00000392919 760 ntTSL 1 (best) BASIC19.87■□□□□ 0.77
HLA-DMBP28068 IRX1-201ENST00000302006 1858 ntAPPRIS P1 TSL 1 (best) BASIC19.87■□□□□ 0.77
HLA-DMBP28068 GAL3ST1-204ENST00000402369 1712 ntAPPRIS P1 TSL 3 BASIC19.87■□□□□ 0.77
HLA-DMBP28068 ACTR3B-201ENST00000256001 2216 ntAPPRIS P1 TSL 1 (best) BASIC19.87■□□□□ 0.77
HLA-DMBP28068 HOXB3-212ENST00000498678 2196 ntAPPRIS P1 TSL 2 BASIC19.87■□□□□ 0.77
HLA-DMBP28068 HAND2-201ENST00000359562 2780 ntAPPRIS P1 TSL 1 (best) BASIC19.86■□□□□ 0.77
HLA-DMBP28068 TMEM9-201ENST00000367330 1959 ntAPPRIS P3 TSL 1 (best) BASIC19.86■□□□□ 0.77
HLA-DMBP28068 IL17D-201ENST00000304920 1861 ntAPPRIS P1 TSL 1 (best) BASIC19.86■□□□□ 0.77
HLA-DMBP28068 NOG-201ENST00000332822 1892 ntAPPRIS P1 BASIC19.86■□□□□ 0.77
HLA-DMBP28068 HOXB3-201ENST00000311626 2642 ntAPPRIS P1 TSL 1 (best) BASIC19.85■□□□□ 0.77
HLA-DMBP28068 CAPNS1-201ENST00000246533 1918 ntAPPRIS P2 TSL 1 (best) BASIC19.85■□□□□ 0.77
HLA-DMBP28068 AL109917.1-201ENST00000412228 906 ntTSL 2 BASIC19.85■□□□□ 0.77
HLA-DMBP28068 ABHD17A-202ENST00000292577 1757 ntAPPRIS P1 TSL 1 (best) BASIC19.84■□□□□ 0.77
HLA-DMBP28068 PAPD7-201ENST00000230859 5459 ntTSL 1 (best) BASIC19.84■□□□□ 0.77
HLA-DMBP28068 ATF4-201ENST00000337304 2019 ntAPPRIS P1 TSL 1 (best) BASIC19.83■□□□□ 0.77
HLA-DMBP28068 ZFAND2B-208ENST00000409594 2021 ntTSL 2 BASIC19.83■□□□□ 0.77
HLA-DMBP28068 AL139393.2-201ENST00000608721 2025 ntBASIC19.83■□□□□ 0.77
HLA-DMBP28068 AC068152.1-210ENST00000574741 836 ntTSL 3 BASIC19.83■□□□□ 0.77
HLA-DMBP28068 MTCH1-202ENST00000373627 2057 ntAPPRIS P1 TSL 1 (best) BASIC19.83■□□□□ 0.76
HLA-DMBP28068 HOOK2-201ENST00000264827 2603 ntAPPRIS P1 TSL 1 (best) BASIC19.83■□□□□ 0.76
HLA-DMBP28068 FAAH-201ENST00000243167 2094 ntAPPRIS P1 TSL 1 (best) BASIC19.82■□□□□ 0.76
HLA-DMBP28068 FTCDNL1-201ENST00000416668 944 ntTSL 1 (best) BASIC19.82■□□□□ 0.76
HLA-DMBP28068 EMID1-203ENST00000404820 2118 ntTSL 5 BASIC19.82■□□□□ 0.76
HLA-DMBP28068 RHOC-208ENST00000369642 1355 ntAPPRIS P1 TSL 1 (best) BASIC19.82■□□□□ 0.76
HLA-DMBP28068 ZNF787-203ENST00000610935 1925 ntAPPRIS P1 TSL 1 (best) BASIC19.81■□□□□ 0.76
HLA-DMBP28068 CCNYL1-205ENST00000420822 952 ntTSL 1 (best) BASIC19.81■□□□□ 0.76
HLA-DMBP28068 PPP3CC-204ENST00000518852 1598 ntTSL 2 BASIC19.81■□□□□ 0.76
HLA-DMBP28068 UBE2L6-201ENST00000287156 1354 ntAPPRIS P1 TSL 1 (best) BASIC19.81■□□□□ 0.76
HLA-DMBP28068 AC010864.1-201ENST00000609407 1511 ntBASIC19.81■□□□□ 0.76
HLA-DMBP28068 FSD1L-208ENST00000495708 1906 ntTSL 1 (best) BASIC19.8■□□□□ 0.76
HLA-DMBP28068 SHARPIN-202ENST00000398712 1765 ntAPPRIS P1 TSL 1 (best) BASIC19.8■□□□□ 0.76
HLA-DMBP28068 ZNF775-201ENST00000329630 2257 ntAPPRIS P1 TSL 1 (best) BASIC19.8■□□□□ 0.76
HLA-DMBP28068 LRRC75B-201ENST00000318753 1238 ntAPPRIS P1 TSL 1 (best) BASIC19.8■□□□□ 0.76
HLA-DMBP28068 AUTS2-202ENST00000403018 957 ntTSL 1 (best) BASIC19.8■□□□□ 0.76
HLA-DMBP28068 ZFAND2B-204ENST00000409217 886 ntTSL 2 BASIC19.8■□□□□ 0.76
HLA-DMBP28068 HOXD-AS2-202ENST00000440016 999 ntTSL 5 BASIC19.8■□□□□ 0.76
HLA-DMBP28068 NADK2-210ENST00000514504 1233 ntTSL 5 BASIC19.8■□□□□ 0.76
HLA-DMBP28068 SMARCD3-203ENST00000392811 2018 ntTSL 1 (best) BASIC19.8■□□□□ 0.76
HLA-DMBP28068 COMMD3-201ENST00000376836 1342 ntAPPRIS P1 TSL 1 (best) BASIC19.79■□□□□ 0.76
HLA-DMBP28068 PCBD2-201ENST00000254908 1223 ntAPPRIS P1 TSL 1 (best) BASIC19.79■□□□□ 0.76
HLA-DMBP28068 CACNG6-202ENST00000346968 645 ntTSL 5 BASIC19.79■□□□□ 0.76
HLA-DMBP28068 TSPOAP1-AS1-203ENST00000579527 2042 ntTSL 2 BASIC19.79■□□□□ 0.76
HLA-DMBP28068 FAM117A-201ENST00000240364 2365 ntAPPRIS P2 TSL 1 (best) BASIC19.79■□□□□ 0.76
HLA-DMBP28068 SENP3-201ENST00000321337 2611 ntAPPRIS P1 TSL 1 (best) BASIC19.79■□□□□ 0.76
HLA-DMBP28068 SLC12A2-202ENST00000343225 5509 ntAPPRIS ALT2 TSL 1 (best) BASIC19.78■□□□□ 0.76
HLA-DMBP28068 ARHGEF7-206ENST00000375741 5525 ntTSL 1 (best) BASIC19.78■□□□□ 0.76
HLA-DMBP28068 BCL7C-201ENST00000215115 1740 ntAPPRIS P1 TSL 1 (best) BASIC19.78■□□□□ 0.76
HLA-DMBP28068 BMP7-204ENST00000450594 1857 ntTSL 2 BASIC19.77■□□□□ 0.76
HLA-DMBP28068 AC006486.1-201ENST00000594664 634 ntAPPRIS P1 TSL 3 BASIC19.77■□□□□ 0.76
HLA-DMBP28068 ST6GALNAC6-205ENST00000373146 2460 ntAPPRIS P3 TSL 1 (best) BASIC19.77■□□□□ 0.75
HLA-DMBP28068 JAG2-201ENST00000331782 5835 ntAPPRIS P1 TSL 1 (best) BASIC19.77■□□□□ 0.75
HLA-DMBP28068 PLSCR3-209ENST00000574401 2032 ntAPPRIS P1 TSL 1 (best) BASIC19.76■□□□□ 0.75
HLA-DMBP28068 GPR75-ASB3-201ENST00000406625 2113 ntAPPRIS P1 TSL 2 BASIC19.76■□□□□ 0.75
HLA-DMBP28068 RDX-210ENST00000530301 1549 ntTSL 1 (best) BASIC19.76■□□□□ 0.75
HLA-DMBP28068 SDCCAG3-201ENST00000298537 2314 ntTSL 1 (best) BASIC19.75■□□□□ 0.75
HLA-DMBP28068 STUB1-205ENST00000565677 1560 ntTSL 1 (best) BASIC19.75■□□□□ 0.75
HLA-DMBP28068 STUB1-201ENST00000219548 1472 ntAPPRIS P1 TSL 1 (best) BASIC19.75■□□□□ 0.75
HLA-DMBP28068 KANSL1L-207ENST00000452086 2334 ntTSL 1 (best) BASIC19.75■□□□□ 0.75
HLA-DMBP28068 PIK3R2-208ENST00000617642 1446 ntTSL 5 BASIC19.75■□□□□ 0.75
HLA-DMBP28068 TCFL5-201ENST00000217162 2453 ntAPPRIS ALT2 TSL 1 (best) BASIC19.75■□□□□ 0.75
HLA-DMBP28068 TCFL5-202ENST00000335351 2456 ntAPPRIS P2 TSL 1 (best) BASIC19.75■□□□□ 0.75
HLA-DMBP28068 PLEKHG6-206ENST00000536531 1683 ntTSL 1 (best) BASIC19.75■□□□□ 0.75
HLA-DMBP28068 MBD2-201ENST00000256429 5188 ntAPPRIS P1 TSL 1 (best) BASIC19.74■□□□□ 0.75
HLA-DMBP28068 TCF24-201ENST00000563496 2450 ntAPPRIS P1 TSL 5 BASIC19.74■□□□□ 0.75
HLA-DMBP28068 MTCH1-201ENST00000373616 2006 ntTSL 1 (best) BASIC19.74■□□□□ 0.75
HLA-DMBP28068 MNX1-201ENST00000252971 2174 ntAPPRIS P3 TSL 1 (best) BASIC19.74■□□□□ 0.75
HLA-DMBP28068 MKNK2-202ENST00000309340 1744 ntAPPRIS ALT2 TSL 1 (best) BASIC19.73■□□□□ 0.75
HLA-DMBP28068 MARCH11-201ENST00000332432 1741 ntAPPRIS P1 TSL 5 BASIC19.73■□□□□ 0.75
HLA-DMBP28068 AC142086.6-201ENST00000621154 1765 ntBASIC19.73■□□□□ 0.75
HLA-DMBP28068 DUSP14-206ENST00000617516 1537 ntAPPRIS P1 TSL 1 (best) BASIC19.72■□□□□ 0.75
HLA-DMBP28068 SUZ12P1-203ENST00000578195 985 ntBASIC19.72■□□□□ 0.75
HLA-DMBP28068 HNRNPAB-205ENST00000506259 1674 ntAPPRIS ALT2 TSL 1 (best) BASIC19.71■□□□□ 0.75
HLA-DMBP28068 CADPS-215ENST00000490353 2669 ntTSL 5 BASIC19.71■□□□□ 0.75
HLA-DMBP28068 AC092755.2-201ENST00000560199 402 ntTSL 3 BASIC19.71■□□□□ 0.75
HLA-DMBP28068 PLSCR3-202ENST00000535512 2067 ntAPPRIS P1 TSL 1 (best) BASIC19.71■□□□□ 0.75
HLA-DMBP28068 EFEMP2-201ENST00000307998 2034 ntAPPRIS P1 TSL 1 (best) BASIC19.7■□□□□ 0.74
HLA-DMBP28068 DRD5P2-201ENST00000421395 2012 ntBASIC19.7■□□□□ 0.74
HLA-DMBP28068 ATRAID-201ENST00000380171 1240 ntTSL 1 (best) BASIC19.7■□□□□ 0.74
HLA-DMBP28068 AC234582.1-201ENST00000447623 923 ntTSL 5 BASIC19.7■□□□□ 0.74
HLA-DMBP28068 CLK2-201ENST00000355560 2120 ntAPPRIS ALT1 TSL 5 BASIC19.7■□□□□ 0.74
HLA-DMBP28068 BTBD19-203ENST00000450269 1572 ntAPPRIS P1 TSL 5 BASIC19.7■□□□□ 0.74
HLA-DMBP28068 CIC-201ENST00000160740 6111 ntAPPRIS ALT1 TSL 5 BASIC19.69■□□□□ 0.74
HLA-DMBP28068 ARHGEF7-205ENST00000375739 5375 ntTSL 1 (best) BASIC19.69■□□□□ 0.74
HLA-DMBP28068 SCCPDH-201ENST00000366510 2503 ntAPPRIS P1 TSL 1 (best) BASIC19.69■□□□□ 0.74
HLA-DMBP28068 SSU72-201ENST00000291386 1290 ntAPPRIS P1 TSL 1 (best) BASIC19.69■□□□□ 0.74
HLA-DMBP28068 RUNX2-205ENST00000465038 1770 ntAPPRIS P4 TSL 5 BASIC19.69■□□□□ 0.74
HLA-DMBP28068 MYLIP-202ENST00000356840 1666 ntAPPRIS P1 TSL 1 (best) BASIC19.68■□□□□ 0.74
HLA-DMBP28068 LACTB-201ENST00000261893 1972 ntAPPRIS P1 TSL 1 (best) BASIC19.68■□□□□ 0.74
HLA-DMBP28068 C9orf40-201ENST00000376854 2327 ntAPPRIS P1 TSL 1 (best) BASIC19.68■□□□□ 0.74
HLA-DMBP28068 EBPL-202ENST00000378268 680 ntTSL 3 BASIC19.67■□□□□ 0.74
HLA-DMBP28068 CAHM-201ENST00000604200 896 ntBASIC19.67■□□□□ 0.74
HLA-DMBP28068 CRIP1-201ENST00000330233 1311 ntAPPRIS P1 TSL 1 (best) BASIC19.67■□□□□ 0.74
HLA-DMBP28068 AL391121.1-201ENST00000607967 1349 ntBASIC19.67■□□□□ 0.74
Retrieved 100 of 98,524 protein–RNA pairs in 48.7 ms