Protein–RNA interactions for Protein: P23440

Pde6b, Rod cGMP-specific 3',5'-cyclic phosphodiesterase subunit beta, mousemouse

Predictions only

Length 856 aa.

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Protein RNA Prediction (catRAPID) Interaction (Experimental data)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
Pde6bP23440 Cacfd1-203ENSMUST00000114005 1286 ntTSL 1 (best) BASIC26.54■■□□□ 1.84
Pde6bP23440 Gm28052-201ENSMUST00000150388 380 ntTSL 3 BASIC26.54■■□□□ 1.84
Pde6bP23440 Ppa2-201ENSMUST00000029644 1226 ntAPPRIS P3 TSL 1 (best) BASIC26.53■■□□□ 1.84
Pde6bP23440 Rbms1-202ENSMUST00000112509 1806 ntTSL 1 (best) BASIC26.53■■□□□ 1.84
Pde6bP23440 C1ql1-201ENSMUST00000057849 1473 ntAPPRIS P1 TSL 1 (best) BASIC26.51■■□□□ 1.83
Pde6bP23440 Gna13-202ENSMUST00000106702 914 ntTSL 1 (best) BASIC26.51■■□□□ 1.83
Pde6bP23440 Bcl7b-202ENSMUST00000111187 564 ntTSL 1 (best) BASIC26.51■■□□□ 1.83
Pde6bP23440 Ankrd60-202ENSMUST00000119453 1084 ntAPPRIS P2 TSL 2 BASIC26.51■■□□□ 1.83
Pde6bP23440 Cyp26a1-201ENSMUST00000025946 1773 ntAPPRIS P1 TSL 1 (best) BASIC26.48■■□□□ 1.83
Pde6bP23440 Nrg3-202ENSMUST00000168810 2175 ntAPPRIS ALT2 TSL 1 (best) BASIC26.47■■□□□ 1.83
Pde6bP23440 Pcbd2-201ENSMUST00000021958 544 ntTSL 1 (best) BASIC26.46■■□□□ 1.83
Pde6bP23440 Ldb1-206ENSMUST00000152946 2108 ntAPPRIS ALT1 TSL 5 BASIC26.45■■□□□ 1.83
Pde6bP23440 Susd4-202ENSMUST00000153348 1898 ntAPPRIS P1 TSL 5 BASIC26.45■■□□□ 1.83
Pde6bP23440 Mtch1-201ENSMUST00000095427 1922 ntAPPRIS P3 TSL 1 (best) BASIC26.45■■□□□ 1.82
Pde6bP23440 Cnot6l-203ENSMUST00000122003 2089 ntTSL 1 (best) BASIC26.45■■□□□ 1.82
Pde6bP23440 Flt3l-211ENSMUST00000211429 1358 ntAPPRIS ALT2 TSL 1 (best) BASIC26.45■■□□□ 1.82
Pde6bP23440 Hoxa13-203ENSMUST00000147595 2395 ntAPPRIS P5 TSL 5 BASIC26.43■■□□□ 1.82
Pde6bP23440 Gm45716-202ENSMUST00000134929 2031 ntAPPRIS P1 TSL 1 (best) BASIC26.43■■□□□ 1.82
Pde6bP23440 Mfsd5-201ENSMUST00000051341 1742 ntAPPRIS P1 TSL 1 (best) BASIC26.42■■□□□ 1.82
Pde6bP23440 Hmgn3-202ENSMUST00000162246 983 ntAPPRIS P4 TSL 1 (best) BASIC26.42■■□□□ 1.82
Pde6bP23440 A030003K21Rik-201ENSMUST00000222600 830 ntAPPRIS P1 BASIC26.42■■□□□ 1.82
Pde6bP23440 Noxo1-201ENSMUST00000019464 2238 ntAPPRIS P1 TSL 1 (best) BASIC26.42■■□□□ 1.82
Pde6bP23440 Gm11599-201ENSMUST00000118720 878 ntBASIC26.41■■□□□ 1.82
Pde6bP23440 AC117232.3-201ENSMUST00000217817 338 ntTSL 2 BASIC26.41■■□□□ 1.82
Pde6bP23440 Syndig1l-204ENSMUST00000222422 1758 ntAPPRIS P1 TSL 1 (best) BASIC26.41■■□□□ 1.82
Pde6bP23440 Rexo2-210ENSMUST00000217037 609 ntTSL 3 BASIC26.4■■□□□ 1.82
Pde6bP23440 Runx3-202ENSMUST00000119564 1855 ntAPPRIS ALT2 TSL 1 (best) BASIC26.39■■□□□ 1.82
Pde6bP23440 Ebf4-203ENSMUST00000110288 2982 ntAPPRIS ALT2 TSL 5 BASIC26.39■■□□□ 1.81
Pde6bP23440 Rbmxl2-201ENSMUST00000098135 1472 ntAPPRIS P1 BASIC26.38■■□□□ 1.81
Pde6bP23440 Yars2-201ENSMUST00000059955 1574 ntAPPRIS P1 TSL 1 (best) BASIC26.37■■□□□ 1.81
Pde6bP23440 Pdss1-201ENSMUST00000053729 1642 ntAPPRIS P1 TSL 1 (best) BASIC26.37■■□□□ 1.81
Pde6bP23440 Ell2-205ENSMUST00000222194 434 ntTSL 3 BASIC26.37■■□□□ 1.81
Pde6bP23440 Snrpe-202ENSMUST00000164574 597 ntTSL 3 BASIC26.36■■□□□ 1.81
Pde6bP23440 Rundc3a-203ENSMUST00000107103 1822 ntTSL 5 BASIC26.36■■□□□ 1.81
Pde6bP23440 Smad7-202ENSMUST00000168918 1882 ntAPPRIS P1 TSL 1 (best) BASIC26.35■■□□□ 1.81
Pde6bP23440 Guf1-201ENSMUST00000031113 1769 ntTSL 1 (best) BASIC26.35■■□□□ 1.81
Pde6bP23440 Stard10-202ENSMUST00000163799 1723 ntTSL 1 (best) BASIC26.34■■□□□ 1.81
Pde6bP23440 Gm19582-201ENSMUST00000187511 841 ntTSL 2 BASIC26.34■■□□□ 1.81
Pde6bP23440 Smad2-202ENSMUST00000091831 1645 ntAPPRIS ALT1 TSL 5 BASIC26.34■■□□□ 1.81
Pde6bP23440 Mxd4-202ENSMUST00000119171 1160 ntTSL 1 (best) BASIC26.33■■□□□ 1.81
Pde6bP23440 Ywhah-201ENSMUST00000019109 1764 ntAPPRIS P1 TSL 1 (best) BASIC26.33■■□□□ 1.8
Pde6bP23440 Tmbim4-204ENSMUST00000134797 486 ntTSL 1 (best) BASIC26.32■■□□□ 1.8
Pde6bP23440 Mapkap1-201ENSMUST00000113123 1530 ntTSL 5 BASIC26.32■■□□□ 1.8
Pde6bP23440 Dmwd-201ENSMUST00000032570 2494 ntAPPRIS P2 TSL 1 (best) BASIC26.32■■□□□ 1.8
Pde6bP23440 C530008M17Rik-201ENSMUST00000086909 1844 ntBASIC26.32■■□□□ 1.8
Pde6bP23440 Tsen34-211ENSMUST00000205287 1375 ntTSL 5 BASIC26.32■■□□□ 1.8
Pde6bP23440 Slc16a6-203ENSMUST00000070872 2354 ntAPPRIS ALT2 TSL 1 (best) BASIC26.32■■□□□ 1.8
Pde6bP23440 Mcat-201ENSMUST00000061882 1893 ntAPPRIS P1 TSL 1 (best) BASIC26.31■■□□□ 1.8
Pde6bP23440 Gm6345-201ENSMUST00000180378 1691 ntBASIC26.31■■□□□ 1.8
Pde6bP23440 6330420H09Rik-201ENSMUST00000211371 1316 ntTSL 1 (best) BASIC26.29■■□□□ 1.8
Pde6bP23440 Fam3c-201ENSMUST00000081288 1487 ntTSL 1 (best) BASIC26.28■■□□□ 1.8
Pde6bP23440 Yrdc-201ENSMUST00000102628 1634 ntAPPRIS P1 TSL 1 (best) BASIC26.28■■□□□ 1.8
Pde6bP23440 C2cd4b-201ENSMUST00000171652 1327 ntAPPRIS P1 TSL 1 (best) BASIC26.27■■□□□ 1.8
Pde6bP23440 Otulin-201ENSMUST00000059662 1491 ntAPPRIS P1 TSL 1 (best) BASIC26.26■■□□□ 1.79
Pde6bP23440 Gm27021-201ENSMUST00000181333 758 ntAPPRIS P1 TSL 4 BASIC26.26■■□□□ 1.79
Pde6bP23440 Ttc19-202ENSMUST00000101075 2193 ntAPPRIS ALT2 TSL 1 (best) BASIC26.26■■□□□ 1.79
Pde6bP23440 Ebag9-203ENSMUST00000227691 1945 ntAPPRIS P1 BASIC26.26■■□□□ 1.79
Pde6bP23440 Pm20d2-202ENSMUST00000119167 1339 ntTSL 1 (best) BASIC26.25■■□□□ 1.79
Pde6bP23440 AC153504.1-201ENSMUST00000218379 2290 ntBASIC26.25■■□□□ 1.79
Pde6bP23440 Ric1-206ENSMUST00000162184 2157 ntTSL 1 (best) BASIC26.24■■□□□ 1.79
Pde6bP23440 Gm13889-202ENSMUST00000148314 1240 ntAPPRIS P1 BASIC26.24■■□□□ 1.79
Pde6bP23440 1810049J17Rik-201ENSMUST00000180521 462 ntAPPRIS P1 BASIC26.23■■□□□ 1.79
Pde6bP23440 1110008P14Rik-201ENSMUST00000048792 680 ntAPPRIS P1 TSL 1 (best) BASIC26.23■■□□□ 1.79
Pde6bP23440 Terf2-203ENSMUST00000116425 2471 ntTSL 1 (best) BASIC26.23■■□□□ 1.79
Pde6bP23440 Mtor-201ENSMUST00000057580 1003 ntTSL 1 (best) BASIC26.22■■□□□ 1.79
Pde6bP23440 Ywhaz-204ENSMUST00000110362 2122 ntAPPRIS P1 TSL 1 (best) BASIC26.21■■□□□ 1.79
Pde6bP23440 Fam89b-202ENSMUST00000116558 1189 ntTSL 1 (best) BASIC26.21■■□□□ 1.79
Pde6bP23440 Gm28592-201ENSMUST00000186844 741 ntTSL 5 BASIC26.21■■□□□ 1.79
Pde6bP23440 Tpst1-201ENSMUST00000040721 2050 ntAPPRIS P1 TSL 1 (best) BASIC26.21■■□□□ 1.79
Pde6bP23440 Slc16a8-201ENSMUST00000039752 1806 ntAPPRIS P1 TSL 1 (best) BASIC26.21■■□□□ 1.79
Pde6bP23440 Fank1-204ENSMUST00000209511 1392 ntTSL 5 BASIC26.2■■□□□ 1.79
Pde6bP23440 Dcaf15-202ENSMUST00000210279 2199 ntAPPRIS P1 TSL 1 (best) BASIC26.2■■□□□ 1.79
Pde6bP23440 Gas7-203ENSMUST00000108681 1595 ntAPPRIS ALT2 TSL 5 BASIC26.19■■□□□ 1.78
Pde6bP23440 C130046K22Rik-201ENSMUST00000129780 727 ntTSL 5 BASIC26.18■■□□□ 1.78
Pde6bP23440 Dbp-204ENSMUST00000211513 1156 ntTSL 5 BASIC26.18■■□□□ 1.78
Pde6bP23440 Tmem200b-201ENSMUST00000094666 1370 ntAPPRIS P1 BASIC26.18■■□□□ 1.78
Pde6bP23440 Apcdd1-202ENSMUST00000163716 1888 ntAPPRIS P1 TSL 1 (best) BASIC26.17■■□□□ 1.78
Pde6bP23440 B230208H11Rik-201ENSMUST00000180529 1112 ntTSL 1 (best) BASIC26.17■■□□□ 1.78
Pde6bP23440 Asf1a-205ENSMUST00000219282 1150 ntTSL 5 BASIC26.17■■□□□ 1.78
Pde6bP23440 Rab40c-201ENSMUST00000026826 2466 ntAPPRIS P1 TSL 1 (best) BASIC26.17■■□□□ 1.78
Pde6bP23440 Snx3-203ENSMUST00000105500 753 ntTSL 5 BASIC26.15■■□□□ 1.78
Pde6bP23440 Zxdc-201ENSMUST00000045740 1612 ntAPPRIS ALT2 TSL 1 (best) BASIC26.14■■□□□ 1.78
Pde6bP23440 Smarcc1-203ENSMUST00000197480 1949 ntTSL 1 (best) BASIC26.14■■□□□ 1.78
Pde6bP23440 Trappc6b-203ENSMUST00000217863 797 ntTSL 2 BASIC26.14■■□□□ 1.78
Pde6bP23440 Fam149b-202ENSMUST00000051915 1981 ntAPPRIS ALT2 TSL 5 BASIC26.13■■□□□ 1.77
Pde6bP23440 Aspscr1-202ENSMUST00000103016 1689 ntTSL 5 BASIC26.13■■□□□ 1.77
Pde6bP23440 Pth1r-202ENSMUST00000166716 2219 ntAPPRIS P1 TSL 1 (best) BASIC26.12■■□□□ 1.77
Pde6bP23440 Zfp131-206ENSMUST00000223813 2561 ntAPPRIS P3 BASIC26.12■■□□□ 1.77
Pde6bP23440 Rpl31-203ENSMUST00000179954 630 ntAPPRIS P1 TSL 1 (best) BASIC26.11■■□□□ 1.77
Pde6bP23440 Krtap28-13-201ENSMUST00000188005 992 ntAPPRIS P1 BASIC26.11■■□□□ 1.77
Pde6bP23440 AC131739.1-201ENSMUST00000221692 1245 ntBASIC26.11■■□□□ 1.77
Pde6bP23440 Eci1-201ENSMUST00000024946 1091 ntAPPRIS P1 TSL 1 (best) BASIC26.11■■□□□ 1.77
Pde6bP23440 Ssbp3-202ENSMUST00000072753 1924 ntTSL 1 (best) BASIC26.11■■□□□ 1.77
Pde6bP23440 Sec63-201ENSMUST00000019937 6032 ntAPPRIS P1 TSL 1 (best) BASIC26.1■■□□□ 1.77
Pde6bP23440 Traf4-201ENSMUST00000017530 2078 ntAPPRIS P1 TSL 1 (best) BASIC26.1■■□□□ 1.77
Pde6bP23440 Pard6a-203ENSMUST00000211888 1179 ntTSL 1 (best) BASIC26.09■■□□□ 1.77
Pde6bP23440 Hsd17b11-201ENSMUST00000031251 1825 ntAPPRIS P1 TSL 1 (best) BASIC26.08■■□□□ 1.77
Pde6bP23440 Sys1-201ENSMUST00000072452 1606 ntAPPRIS P1 TSL 1 (best) BASIC26.07■■□□□ 1.76
Pde6bP23440 Chtf8-205ENSMUST00000176515 694 ntTSL 2 BASIC26.07■■□□□ 1.76
Pde6bP23440 Tbx1-201ENSMUST00000009241 1777 ntAPPRIS P1 TSL 1 (best) BASIC26.06■■□□□ 1.76
Retrieved 100 of 76,532 protein–RNA pairs in 124.1 ms