Protein–RNA interactions for Protein: P09027

Hoxd3, Homeobox protein Hox-D3, mousemouse

Predictions only

Length 433 aa.

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Protein RNA Prediction (catRAPID) Interaction (Experimental data)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
Hoxd3P09027 Dmwd-201ENSMUST00000032570 2494 ntAPPRIS P2 TSL 1 (best) BASIC18.9■□□□□ 0.62
Hoxd3P09027 Galnt10-202ENSMUST00000108846 1745 ntTSL 1 (best) BASIC18.89■□□□□ 0.61
Hoxd3P09027 Tbx1-201ENSMUST00000009241 1777 ntAPPRIS P1 TSL 1 (best) BASIC18.89■□□□□ 0.61
Hoxd3P09027 Endog-201ENSMUST00000015481 1063 ntAPPRIS P1 TSL 1 (best) BASIC18.89■□□□□ 0.61
Hoxd3P09027 Nkain2-201ENSMUST00000092602 558 ntBASIC18.89■□□□□ 0.61
Hoxd3P09027 Efemp2-201ENSMUST00000070118 1781 ntTSL 1 (best) BASIC18.88■□□□□ 0.61
Hoxd3P09027 AC153504.1-201ENSMUST00000218379 2290 ntBASIC18.88■□□□□ 0.61
Hoxd3P09027 Yars2-201ENSMUST00000059955 1574 ntAPPRIS P1 TSL 1 (best) BASIC18.86■□□□□ 0.61
Hoxd3P09027 Zfyve21-201ENSMUST00000021714 1308 ntAPPRIS P2 TSL 1 (best) BASIC18.85■□□□□ 0.61
Hoxd3P09027 Gm20402-201ENSMUST00000174738 687 ntTSL 3 BASIC18.85■□□□□ 0.61
Hoxd3P09027 Gskip-202ENSMUST00000222284 1064 ntTSL 1 (best) BASIC18.85■□□□□ 0.61
Hoxd3P09027 Gm9887-201ENSMUST00000053451 624 ntAPPRIS P1 BASIC18.85■□□□□ 0.61
Hoxd3P09027 Syndig1l-204ENSMUST00000222422 1758 ntAPPRIS P1 TSL 1 (best) BASIC18.85■□□□□ 0.61
Hoxd3P09027 Yrdc-201ENSMUST00000102628 1634 ntAPPRIS P1 TSL 1 (best) BASIC18.83■□□□□ 0.61
Hoxd3P09027 Fam241a-201ENSMUST00000057198 1607 ntTSL 1 (best) BASIC18.83■□□□□ 0.61
Hoxd3P09027 Ccdc50-202ENSMUST00000096127 1096 ntTSL 1 (best) BASIC18.83■□□□□ 0.6
Hoxd3P09027 Raly-201ENSMUST00000029120 1802 ntAPPRIS ALT2 TSL 5 BASIC18.83■□□□□ 0.6
Hoxd3P09027 Slc16a8-201ENSMUST00000039752 1806 ntAPPRIS P1 TSL 1 (best) BASIC18.83■□□□□ 0.6
Hoxd3P09027 Traf4-201ENSMUST00000017530 2078 ntAPPRIS P1 TSL 1 (best) BASIC18.82■□□□□ 0.6
Hoxd3P09027 Gna13-202ENSMUST00000106702 914 ntTSL 1 (best) BASIC18.82■□□□□ 0.6
Hoxd3P09027 AC163623.1-201ENSMUST00000213738 727 ntAPPRIS P1 TSL 3 BASIC18.82■□□□□ 0.6
Hoxd3P09027 Pdss1-201ENSMUST00000053729 1642 ntAPPRIS P1 TSL 1 (best) BASIC18.8■□□□□ 0.6
Hoxd3P09027 Dda1-209ENSMUST00000147642 1865 ntTSL 2 BASIC18.8■□□□□ 0.6
Hoxd3P09027 Gm11529-201ENSMUST00000153012 639 ntTSL 1 (best) BASIC18.79■□□□□ 0.6
Hoxd3P09027 Pfdn2-202ENSMUST00000135941 1735 ntAPPRIS P1 TSL 1 (best) BASIC18.79■□□□□ 0.6
Hoxd3P09027 Serpinb6a-201ENSMUST00000017188 1504 ntTSL 1 (best) BASIC18.79■□□□□ 0.6
Hoxd3P09027 Glrx2-205ENSMUST00000145571 758 ntTSL 2 BASIC18.78■□□□□ 0.6
Hoxd3P09027 Kras-207ENSMUST00000203147 817 ntTSL 5 BASIC18.78■□□□□ 0.6
Hoxd3P09027 Fam3c-201ENSMUST00000081288 1487 ntTSL 1 (best) BASIC18.77■□□□□ 0.59
Hoxd3P09027 A730013G03Rik-202ENSMUST00000195012 2097 ntBASIC18.75■□□□□ 0.59
Hoxd3P09027 Iscu-203ENSMUST00000112312 1116 ntTSL 5 BASIC18.75■□□□□ 0.59
Hoxd3P09027 Smarcad1-211ENSMUST00000204696 734 ntTSL 1 (best) BASIC18.75■□□□□ 0.59
Hoxd3P09027 Pth1r-202ENSMUST00000166716 2219 ntAPPRIS P1 TSL 1 (best) BASIC18.75■□□□□ 0.59
Hoxd3P09027 B4galt7-202ENSMUST00000100764 2195 ntTSL 1 (best) BASIC18.75■□□□□ 0.59
Hoxd3P09027 Phlda3-201ENSMUST00000038945 1435 ntAPPRIS P1 TSL 1 (best) BASIC18.74■□□□□ 0.59
Hoxd3P09027 Guk1-204ENSMUST00000170202 1078 ntAPPRIS P1 TSL 1 (best) BASIC18.74■□□□□ 0.59
Hoxd3P09027 Anapc11-202ENSMUST00000093140 962 ntAPPRIS P1 TSL 1 (best) BASIC18.74■□□□□ 0.59
Hoxd3P09027 Dpf1-204ENSMUST00000108231 2040 ntTSL 5 BASIC18.74■□□□□ 0.59
Hoxd3P09027 Hsd17b11-201ENSMUST00000031251 1825 ntAPPRIS P1 TSL 1 (best) BASIC18.74■□□□□ 0.59
Hoxd3P09027 Dtnbp1-202ENSMUST00000110128 1305 ntAPPRIS ALT2 TSL 5 BASIC18.74■□□□□ 0.59
Hoxd3P09027 Mogs-201ENSMUST00000032114 2780 ntAPPRIS P1 TSL 1 (best) BASIC18.73■□□□□ 0.59
Hoxd3P09027 Gm2018-201ENSMUST00000140754 478 ntTSL 2 BASIC18.73■□□□□ 0.59
Hoxd3P09027 Dazap1-203ENSMUST00000105362 2081 ntAPPRIS P3 TSL 1 (best) BASIC18.72■□□□□ 0.59
Hoxd3P09027 Tspan33-201ENSMUST00000046750 1994 ntAPPRIS P3 TSL 1 (best) BASIC18.72■□□□□ 0.59
Hoxd3P09027 Rnf220-212ENSMUST00000221654 1949 ntTSL 1 (best) BASIC18.72■□□□□ 0.59
Hoxd3P09027 Aspscr1-201ENSMUST00000026135 1820 ntAPPRIS P1 TSL 1 (best) BASIC18.72■□□□□ 0.59
Hoxd3P09027 Zswim6-201ENSMUST00000105097 5456 ntTSL 5 BASIC18.71■□□□□ 0.59
Hoxd3P09027 Ankrd60-202ENSMUST00000119453 1084 ntAPPRIS P2 TSL 2 BASIC18.71■□□□□ 0.59
Hoxd3P09027 AC117232.3-201ENSMUST00000217817 338 ntTSL 2 BASIC18.71■□□□□ 0.59
Hoxd3P09027 Kcmf1-204ENSMUST00000204598 1743 ntTSL 1 (best) BASIC18.71■□□□□ 0.59
Hoxd3P09027 Rundc3a-204ENSMUST00000107105 1861 ntTSL 1 (best) BASIC18.71■□□□□ 0.59
Hoxd3P09027 Stradb-202ENSMUST00000114296 1348 ntTSL 1 (best) BASIC18.71■□□□□ 0.59
Hoxd3P09027 Fam120aos-201ENSMUST00000180775 1780 ntTSL 1 (best) BASIC18.7■□□□□ 0.58
Hoxd3P09027 Cldn10-203ENSMUST00000100314 2128 ntAPPRIS P1 TSL 1 (best) BASIC18.7■□□□□ 0.58
Hoxd3P09027 Stau2-210ENSMUST00000149320 2214 ntTSL 5 BASIC18.7■□□□□ 0.58
Hoxd3P09027 Fam149b-202ENSMUST00000051915 1981 ntAPPRIS ALT2 TSL 5 BASIC18.7■□□□□ 0.58
Hoxd3P09027 Rundc3a-203ENSMUST00000107103 1822 ntTSL 5 BASIC18.7■□□□□ 0.58
Hoxd3P09027 Gas7-203ENSMUST00000108681 1595 ntAPPRIS ALT2 TSL 5 BASIC18.69■□□□□ 0.58
Hoxd3P09027 Tor1a-201ENSMUST00000028200 1401 ntAPPRIS P1 TSL 1 (best) BASIC18.69■□□□□ 0.58
Hoxd3P09027 Ppp1r3e-202ENSMUST00000177403 1957 ntAPPRIS P1 TSL 5 BASIC18.68■□□□□ 0.58
Hoxd3P09027 Itpka-201ENSMUST00000028758 1818 ntAPPRIS P1 TSL 1 (best) BASIC18.68■□□□□ 0.58
Hoxd3P09027 Gm28052-201ENSMUST00000150388 380 ntTSL 3 BASIC18.68■□□□□ 0.58
Hoxd3P09027 Rab40c-201ENSMUST00000026826 2466 ntAPPRIS P1 TSL 1 (best) BASIC18.68■□□□□ 0.58
Hoxd3P09027 Rbmxl2-201ENSMUST00000098135 1472 ntAPPRIS P1 BASIC18.67■□□□□ 0.58
Hoxd3P09027 Foxc1-201ENSMUST00000062292 5844 ntAPPRIS P1 BASIC18.67■□□□□ 0.58
Hoxd3P09027 E2f5-202ENSMUST00000165922 1751 ntAPPRIS ALT2 TSL 5 BASIC18.66■□□□□ 0.58
Hoxd3P09027 1110065P20Rik-201ENSMUST00000106190 968 ntAPPRIS P1 TSL 2 BASIC18.66■□□□□ 0.58
Hoxd3P09027 Upp2-202ENSMUST00000071543 2150 ntTSL 1 (best) BASIC18.66■□□□□ 0.58
Hoxd3P09027 Gm17494-201ENSMUST00000072769 1800 ntTSL 1 (best) BASIC18.65■□□□□ 0.58
Hoxd3P09027 Zxda-201ENSMUST00000117281 2621 ntBASIC18.65■□□□□ 0.58
Hoxd3P09027 Sys1-201ENSMUST00000072452 1606 ntAPPRIS P1 TSL 1 (best) BASIC18.65■□□□□ 0.58
Hoxd3P09027 Gfra4-203ENSMUST00000110234 600 ntTSL 1 (best) BASIC18.65■□□□□ 0.58
Hoxd3P09027 Gfra4-204ENSMUST00000110235 573 ntTSL 1 (best) BASIC18.65■□□□□ 0.58
Hoxd3P09027 Galnt12-202ENSMUST00000107744 2077 ntTSL 1 (best) BASIC18.64■□□□□ 0.57
Hoxd3P09027 Zxdc-201ENSMUST00000045740 1612 ntAPPRIS ALT2 TSL 1 (best) BASIC18.64■□□□□ 0.57
Hoxd3P09027 1810049J17Rik-201ENSMUST00000180521 462 ntAPPRIS P1 BASIC18.64■□□□□ 0.57
Hoxd3P09027 Gm5987-201ENSMUST00000196433 1151 ntBASIC18.64■□□□□ 0.57
Hoxd3P09027 Mat2b-201ENSMUST00000040167 1949 ntAPPRIS P1 TSL 1 (best) BASIC18.64■□□□□ 0.57
Hoxd3P09027 Gm17110-201ENSMUST00000171248 735 ntTSL 3 BASIC18.63■□□□□ 0.57
Hoxd3P09027 1700084E18Rik-202ENSMUST00000205624 729 ntBASIC18.63■□□□□ 0.57
Hoxd3P09027 Cacfd1-204ENSMUST00000114006 1648 ntAPPRIS P1 TSL 1 (best) BASIC18.62■□□□□ 0.57
Hoxd3P09027 Terf2-201ENSMUST00000068388 1915 ntAPPRIS ALT2 TSL 1 (best) BASIC18.62■□□□□ 0.57
Hoxd3P09027 Clk2-201ENSMUST00000090927 2128 ntAPPRIS ALT1 TSL 1 (best) BASIC18.62■□□□□ 0.57
Hoxd3P09027 Dtnb-211ENSMUST00000173240 2218 ntTSL 5 BASIC18.62■□□□□ 0.57
Hoxd3P09027 Slc35a3-202ENSMUST00000120120 1791 ntAPPRIS P1 TSL 1 (best) BASIC18.61■□□□□ 0.57
Hoxd3P09027 Aspscr1-202ENSMUST00000103016 1689 ntTSL 5 BASIC18.61■□□□□ 0.57
Hoxd3P09027 Dapk3-201ENSMUST00000047665 1676 ntAPPRIS P1 TSL 5 BASIC18.61■□□□□ 0.57
Hoxd3P09027 Pm20d2-202ENSMUST00000119167 1339 ntTSL 1 (best) BASIC18.61■□□□□ 0.57
Hoxd3P09027 Cacfd1-203ENSMUST00000114005 1286 ntTSL 1 (best) BASIC18.61■□□□□ 0.57
Hoxd3P09027 Ppa2-201ENSMUST00000029644 1226 ntAPPRIS P3 TSL 1 (best) BASIC18.61■□□□□ 0.57
Hoxd3P09027 Kansl2-202ENSMUST00000116400 2110 ntAPPRIS P2 TSL 1 (best) BASIC18.61■□□□□ 0.57
Hoxd3P09027 Mapkap1-201ENSMUST00000113123 1530 ntTSL 5 BASIC18.6■□□□□ 0.57
Hoxd3P09027 Gm19582-201ENSMUST00000187511 841 ntTSL 2 BASIC18.6■□□□□ 0.57
Hoxd3P09027 Rtn4r-201ENSMUST00000059589 1938 ntAPPRIS P1 TSL 1 (best) BASIC18.6■□□□□ 0.57
Hoxd3P09027 Adap1-201ENSMUST00000110865 2557 ntAPPRIS P1 TSL 5 BASIC18.6■□□□□ 0.57
Hoxd3P09027 Ankrd28-201ENSMUST00000014640 6712 ntAPPRIS P2 TSL 1 (best) BASIC18.6■□□□□ 0.57
Hoxd3P09027 Gm7432-201ENSMUST00000210343 879 ntBASIC18.59■□□□□ 0.57
Hoxd3P09027 Hspb1-202ENSMUST00000111155 930 ntTSL 1 (best) BASIC18.58■□□□□ 0.56
Hoxd3P09027 Mxd4-202ENSMUST00000119171 1160 ntTSL 1 (best) BASIC18.58■□□□□ 0.56
Hoxd3P09027 Zfp358-201ENSMUST00000061508 1999 ntAPPRIS P1 TSL 1 (best) BASIC18.57■□□□□ 0.56
Retrieved 100 of 76,532 protein–RNA pairs in 115.1 ms