Protein–RNA interactions for Protein: P08122

Col4a2, Collagen alpha-2(IV) chain, mousemouse

Predictions only

Length 1,707 aa.

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Protein RNA Prediction (catRAPID) Interaction (Experimental data)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
Col4a2P08122 Hoxa13-203ENSMUST00000147595 2395 ntAPPRIS P5 TSL 5 BASIC23.44■■□□□ 1.34
Col4a2P08122 Gm11599-201ENSMUST00000118720 878 ntBASIC23.44■■□□□ 1.34
Col4a2P08122 Flt3l-211ENSMUST00000211429 1358 ntAPPRIS ALT2 TSL 1 (best) BASIC23.43■■□□□ 1.34
Col4a2P08122 Asf1a-205ENSMUST00000219282 1150 ntTSL 5 BASIC23.42■■□□□ 1.34
Col4a2P08122 Gas1-202ENSMUST00000223933 1155 ntAPPRIS P2 BASIC23.42■■□□□ 1.34
Col4a2P08122 A030003K21Rik-201ENSMUST00000222600 830 ntAPPRIS P1 BASIC23.41■■□□□ 1.34
Col4a2P08122 Ankrd60-202ENSMUST00000119453 1084 ntAPPRIS P2 TSL 2 BASIC23.4■■□□□ 1.34
Col4a2P08122 Runx3-202ENSMUST00000119564 1855 ntAPPRIS ALT2 TSL 1 (best) BASIC23.4■■□□□ 1.34
Col4a2P08122 AC153504.1-201ENSMUST00000218379 2290 ntBASIC23.4■■□□□ 1.34
Col4a2P08122 Dbp-204ENSMUST00000211513 1156 ntTSL 5 BASIC23.39■■□□□ 1.34
Col4a2P08122 Dazap1-203ENSMUST00000105362 2081 ntAPPRIS P3 TSL 1 (best) BASIC23.38■■□□□ 1.33
Col4a2P08122 Tmbim4-204ENSMUST00000134797 486 ntTSL 1 (best) BASIC23.38■■□□□ 1.33
Col4a2P08122 Tpst1-201ENSMUST00000040721 2050 ntAPPRIS P1 TSL 1 (best) BASIC23.37■■□□□ 1.33
Col4a2P08122 Cebpb-201ENSMUST00000070642 1504 ntAPPRIS P1 BASIC23.37■■□□□ 1.33
Col4a2P08122 Rheb-201ENSMUST00000030787 1784 ntAPPRIS P1 TSL 1 (best) BASIC23.37■■□□□ 1.33
Col4a2P08122 Hmgn3-202ENSMUST00000162246 983 ntAPPRIS P4 TSL 1 (best) BASIC23.36■■□□□ 1.33
Col4a2P08122 Bcl7b-202ENSMUST00000111187 564 ntTSL 1 (best) BASIC23.36■■□□□ 1.33
Col4a2P08122 Mxd4-202ENSMUST00000119171 1160 ntTSL 1 (best) BASIC23.36■■□□□ 1.33
Col4a2P08122 Raly-201ENSMUST00000029120 1802 ntAPPRIS ALT2 TSL 5 BASIC23.35■■□□□ 1.33
Col4a2P08122 Pfdn2-202ENSMUST00000135941 1735 ntAPPRIS P1 TSL 1 (best) BASIC23.35■■□□□ 1.33
Col4a2P08122 Gm6345-201ENSMUST00000180378 1691 ntBASIC23.34■■□□□ 1.33
Col4a2P08122 1110008P14Rik-201ENSMUST00000048792 680 ntAPPRIS P1 TSL 1 (best) BASIC23.34■■□□□ 1.33
Col4a2P08122 P2rx2-205ENSMUST00000200037 1569 ntAPPRIS ALT2 TSL 1 (best) BASIC23.34■■□□□ 1.33
Col4a2P08122 Serpinb6a-201ENSMUST00000017188 1504 ntTSL 1 (best) BASIC23.34■■□□□ 1.33
Col4a2P08122 Pard6a-203ENSMUST00000211888 1179 ntTSL 1 (best) BASIC23.33■■□□□ 1.33
Col4a2P08122 Gm28052-201ENSMUST00000150388 380 ntTSL 3 BASIC23.32■■□□□ 1.32
Col4a2P08122 Mir6538-201ENSMUST00000183713 110 ntBASIC23.32■■□□□ 1.32
Col4a2P08122 Ric1-206ENSMUST00000162184 2157 ntTSL 1 (best) BASIC23.32■■□□□ 1.32
Col4a2P08122 Mapkap1-201ENSMUST00000113123 1530 ntTSL 5 BASIC23.31■■□□□ 1.32
Col4a2P08122 Rexo2-210ENSMUST00000217037 609 ntTSL 3 BASIC23.3■■□□□ 1.32
Col4a2P08122 Dapk3-202ENSMUST00000178422 1730 ntAPPRIS P1 TSL 1 (best) BASIC23.29■■□□□ 1.32
Col4a2P08122 Traf4-201ENSMUST00000017530 2078 ntAPPRIS P1 TSL 1 (best) BASIC23.29■■□□□ 1.32
Col4a2P08122 C2cd4b-201ENSMUST00000171652 1327 ntAPPRIS P1 TSL 1 (best) BASIC23.29■■□□□ 1.32
Col4a2P08122 AC117232.3-201ENSMUST00000217817 338 ntTSL 2 BASIC23.29■■□□□ 1.32
Col4a2P08122 Gm9887-201ENSMUST00000053451 624 ntAPPRIS P1 BASIC23.29■■□□□ 1.32
Col4a2P08122 Tlx3-201ENSMUST00000037746 1533 ntAPPRIS P1 TSL 1 (best) BASIC23.28■■□□□ 1.32
Col4a2P08122 Gna13-202ENSMUST00000106702 914 ntTSL 1 (best) BASIC23.28■■□□□ 1.32
Col4a2P08122 Sntb1-202ENSMUST00000110200 1225 ntTSL 1 (best) BASIC23.28■■□□□ 1.32
Col4a2P08122 Ell2-205ENSMUST00000222194 434 ntTSL 3 BASIC23.28■■□□□ 1.32
Col4a2P08122 Popdc3-201ENSMUST00000019994 1853 ntAPPRIS P1 TSL 1 (best) BASIC23.28■■□□□ 1.32
Col4a2P08122 Ap1ar-210ENSMUST00000200409 2580 ntTSL 5 BASIC23.27■■□□□ 1.32
Col4a2P08122 Pcgf5-201ENSMUST00000062389 1566 ntTSL 5 BASIC23.26■■□□□ 1.31
Col4a2P08122 Rundc3a-203ENSMUST00000107103 1822 ntTSL 5 BASIC23.26■■□□□ 1.31
Col4a2P08122 Susd4-202ENSMUST00000153348 1898 ntAPPRIS P1 TSL 5 BASIC23.26■■□□□ 1.31
Col4a2P08122 Gm11175-201ENSMUST00000116172 543 ntBASIC23.25■■□□□ 1.31
Col4a2P08122 Rbmxl2-201ENSMUST00000098135 1472 ntAPPRIS P1 BASIC23.24■■□□□ 1.31
Col4a2P08122 Rab43-202ENSMUST00000032135 1262 ntTSL 1 (best) BASIC23.24■■□□□ 1.31
Col4a2P08122 Guf1-201ENSMUST00000031113 1769 ntTSL 1 (best) BASIC23.23■■□□□ 1.31
Col4a2P08122 Smarcc1-203ENSMUST00000197480 1949 ntTSL 1 (best) BASIC23.22■■□□□ 1.31
Col4a2P08122 Snx3-203ENSMUST00000105500 753 ntTSL 5 BASIC23.22■■□□□ 1.31
Col4a2P08122 6330420H09Rik-201ENSMUST00000211371 1316 ntTSL 1 (best) BASIC23.22■■□□□ 1.31
Col4a2P08122 Rnf220-212ENSMUST00000221654 1949 ntTSL 1 (best) BASIC23.22■■□□□ 1.31
Col4a2P08122 Fam69b-201ENSMUST00000074240 1622 ntAPPRIS P1 TSL 1 (best) BASIC23.21■■□□□ 1.31
Col4a2P08122 Mrps7-201ENSMUST00000058109 1962 ntAPPRIS P1 TSL 1 (best) BASIC23.21■■□□□ 1.31
Col4a2P08122 Reps1-206ENSMUST00000154718 2402 ntTSL 5 BASIC23.21■■□□□ 1.31
Col4a2P08122 Rpl31-203ENSMUST00000179954 630 ntAPPRIS P1 TSL 1 (best) BASIC23.21■■□□□ 1.31
Col4a2P08122 Gm27021-201ENSMUST00000181333 758 ntAPPRIS P1 TSL 4 BASIC23.2■■□□□ 1.3
Col4a2P08122 Ssbp3-202ENSMUST00000072753 1924 ntTSL 1 (best) BASIC23.2■■□□□ 1.3
Col4a2P08122 Gm13889-202ENSMUST00000148314 1240 ntAPPRIS P1 BASIC23.19■■□□□ 1.3
Col4a2P08122 Pm20d2-202ENSMUST00000119167 1339 ntTSL 1 (best) BASIC23.19■■□□□ 1.3
Col4a2P08122 Smagp-202ENSMUST00000172334 952 ntAPPRIS P1 TSL 2 BASIC23.18■■□□□ 1.3
Col4a2P08122 Krtap28-13-201ENSMUST00000188005 992 ntAPPRIS P1 BASIC23.18■■□□□ 1.3
Col4a2P08122 E130304I02Rik-202ENSMUST00000187873 696 ntTSL 1 (best) BASIC23.17■■□□□ 1.3
Col4a2P08122 Ppp1r3e-202ENSMUST00000177403 1957 ntAPPRIS P1 TSL 5 BASIC23.17■■□□□ 1.3
Col4a2P08122 Pdia5-201ENSMUST00000023550 1808 ntAPPRIS P1 TSL 1 (best) BASIC23.16■■□□□ 1.3
Col4a2P08122 Efemp2-201ENSMUST00000070118 1781 ntTSL 1 (best) BASIC23.16■■□□□ 1.3
Col4a2P08122 Gm19582-201ENSMUST00000187511 841 ntTSL 2 BASIC23.16■■□□□ 1.3
Col4a2P08122 Mtor-201ENSMUST00000057580 1003 ntTSL 1 (best) BASIC23.16■■□□□ 1.3
Col4a2P08122 Ccdc9-202ENSMUST00000118976 2175 ntAPPRIS ALT2 TSL 1 (best) BASIC23.15■■□□□ 1.3
Col4a2P08122 Fam89b-202ENSMUST00000116558 1189 ntTSL 1 (best) BASIC23.15■■□□□ 1.3
Col4a2P08122 C130046K22Rik-201ENSMUST00000129780 727 ntTSL 5 BASIC23.15■■□□□ 1.3
Col4a2P08122 Ctbp1-201ENSMUST00000079746 2279 ntAPPRIS P3 TSL 1 (best) BASIC23.14■■□□□ 1.29
Col4a2P08122 Ryk-203ENSMUST00000175883 2505 ntAPPRIS P3 TSL 1 (best) BASIC23.13■■□□□ 1.29
Col4a2P08122 C1ql1-201ENSMUST00000057849 1473 ntAPPRIS P1 TSL 1 (best) BASIC23.13■■□□□ 1.29
Col4a2P08122 Cadm1-210ENSMUST00000214542 899 ntTSL 1 (best) BASIC23.13■■□□□ 1.29
Col4a2P08122 Rundc3a-204ENSMUST00000107105 1861 ntTSL 1 (best) BASIC23.13■■□□□ 1.29
Col4a2P08122 Zxda-201ENSMUST00000117281 2621 ntBASIC23.12■■□□□ 1.29
Col4a2P08122 E130218I03Rik-204ENSMUST00000131447 888 ntAPPRIS P1 TSL 5 BASIC23.11■■□□□ 1.29
Col4a2P08122 Pard6a-201ENSMUST00000093195 1265 ntAPPRIS P3 TSL 1 (best) BASIC23.11■■□□□ 1.29
Col4a2P08122 Tsen34-211ENSMUST00000205287 1375 ntTSL 5 BASIC23.11■■□□□ 1.29
Col4a2P08122 Rab40c-201ENSMUST00000026826 2466 ntAPPRIS P1 TSL 1 (best) BASIC23.1■■□□□ 1.29
Col4a2P08122 Pth1r-202ENSMUST00000166716 2219 ntAPPRIS P1 TSL 1 (best) BASIC23.1■■□□□ 1.29
Col4a2P08122 Mtm1-204ENSMUST00000101501 770 ntTSL 1 (best) BASIC23.1■■□□□ 1.29
Col4a2P08122 Chtf8-205ENSMUST00000176515 694 ntTSL 2 BASIC23.1■■□□□ 1.29
Col4a2P08122 Aspscr1-201ENSMUST00000026135 1820 ntAPPRIS P1 TSL 1 (best) BASIC23.1■■□□□ 1.29
Col4a2P08122 Ttc19-202ENSMUST00000101075 2193 ntAPPRIS ALT2 TSL 1 (best) BASIC23.09■■□□□ 1.29
Col4a2P08122 Syndig1l-204ENSMUST00000222422 1758 ntAPPRIS P1 TSL 1 (best) BASIC23.09■■□□□ 1.29
Col4a2P08122 Hexdc-202ENSMUST00000106117 2149 ntAPPRIS P2 TSL 1 (best) BASIC23.09■■□□□ 1.29
Col4a2P08122 Rbms1-202ENSMUST00000112509 1806 ntTSL 1 (best) BASIC23.08■■□□□ 1.28
Col4a2P08122 Gm9905-201ENSMUST00000065740 1845 ntBASIC23.08■■□□□ 1.28
Col4a2P08122 Upp2-202ENSMUST00000071543 2150 ntTSL 1 (best) BASIC23.06■■□□□ 1.28
Col4a2P08122 Trappc6b-203ENSMUST00000217863 797 ntTSL 2 BASIC23.06■■□□□ 1.28
Col4a2P08122 Gm6206-201ENSMUST00000133472 2199 ntBASIC23.06■■□□□ 1.28
Col4a2P08122 Tbx1-201ENSMUST00000009241 1777 ntAPPRIS P1 TSL 1 (best) BASIC23.05■■□□□ 1.28
Col4a2P08122 Zfp787-201ENSMUST00000094870 1897 ntAPPRIS P1 TSL 1 (best) BASIC23.04■■□□□ 1.28
Col4a2P08122 Tmem200b-201ENSMUST00000094666 1370 ntAPPRIS P1 BASIC23.04■■□□□ 1.28
Col4a2P08122 Otulin-201ENSMUST00000059662 1491 ntAPPRIS P1 TSL 1 (best) BASIC23.03■■□□□ 1.28
Col4a2P08122 AC131739.1-201ENSMUST00000221692 1245 ntBASIC23.03■■□□□ 1.28
Col4a2P08122 Tceal3-201ENSMUST00000060904 1116 ntAPPRIS P1 TSL 1 (best) BASIC23.03■■□□□ 1.28
Col4a2P08122 Pdss1-201ENSMUST00000053729 1642 ntAPPRIS P1 TSL 1 (best) BASIC23.03■■□□□ 1.28
Retrieved 100 of 76,532 protein–RNA pairs in 30.1 ms