Protein–RNA interactions for Protein: P06340

HLA-DOA, HLA class II histocompatibility antigen, DO alpha chain, humanhuman

Predictions only

Length 250 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
HLA-DOAP06340 HOXB3-210ENST00000489475 1845 ntTSL 2 BASIC31.37■■■□□ 2.61
HLA-DOAP06340 CAPNS1-211ENST00000590874 926 ntTSL 5 BASIC31.36■■■□□ 2.61
HLA-DOAP06340 TPRA1-201ENST00000296210 1725 ntTSL 1 (best) BASIC31.35■■■□□ 2.61
HLA-DOAP06340 LMNTD2-201ENST00000329451 2084 ntAPPRIS P1 TSL 1 (best) BASIC31.34■■■□□ 2.61
HLA-DOAP06340 LINC01971-201ENST00000617888 1048 ntBASIC31.33■■■□□ 2.61
HLA-DOAP06340 PI4KAP1-202ENST00000611748 1906 ntTSL 1 (best) BASIC31.33■■■□□ 2.61
HLA-DOAP06340 MACF1-219ENST00000484793 834 ntTSL 2 BASIC31.32■■■□□ 2.6
HLA-DOAP06340 ACOT12-204ENST00000513751 612 ntTSL 1 (best) BASIC31.32■■■□□ 2.6
HLA-DOAP06340 AC004837.3-201ENST00000420748 565 ntTSL 4 BASIC31.31■■■□□ 2.6
HLA-DOAP06340 RNF166-209ENST00000567844 633 ntTSL 5 BASIC31.31■■■□□ 2.6
HLA-DOAP06340 QDPR-201ENST00000281243 1648 ntAPPRIS P1 TSL 1 (best) BASIC31.31■■■□□ 2.6
HLA-DOAP06340 LRRC61-202ENST00000359623 1877 ntAPPRIS P1 TSL 2 BASIC31.3■■■□□ 2.6
HLA-DOAP06340 EI24-212ENST00000615917 1407 ntTSL 2 BASIC31.3■■■□□ 2.6
HLA-DOAP06340 FTCD-203ENST00000397746 1878 ntAPPRIS P1 TSL 1 (best) BASIC31.29■■■□□ 2.6
HLA-DOAP06340 TCAM1P-201ENST00000463377 452 ntTSL 3 BASIC31.27■■■□□ 2.6
HLA-DOAP06340 DUX4L11-201ENST00000611504 1267 ntBASIC31.27■■■□□ 2.6
HLA-DOAP06340 DUX4L12-201ENST00000614593 1267 ntBASIC31.27■■■□□ 2.6
HLA-DOAP06340 DUX4L14-201ENST00000621227 1267 ntBASIC31.27■■■□□ 2.6
HLA-DOAP06340 MAD2L2-207ENST00000376692 1118 ntAPPRIS P1 TSL 1 (best) BASIC31.26■■■□□ 2.59
HLA-DOAP06340 E2F4-201ENST00000379378 2096 ntAPPRIS P1 TSL 1 (best) BASIC31.26■■■□□ 2.59
HLA-DOAP06340 ELK4-201ENST00000289703 2118 ntTSL 1 (best) BASIC31.25■■■□□ 2.59
HLA-DOAP06340 AP002884.3-203ENST00000419895 1711 ntTSL 2 BASIC31.25■■■□□ 2.59
HLA-DOAP06340 AC092647.5-201ENST00000426595 1732 ntAPPRIS P1 TSL 5 BASIC31.24■■■□□ 2.59
HLA-DOAP06340 MBOAT7-203ENST00000391754 1797 ntTSL 1 (best) BASIC31.24■■■□□ 2.59
HLA-DOAP06340 HMX1-201ENST00000400677 1895 ntAPPRIS P1 TSL 1 (best) BASIC31.23■■■□□ 2.59
HLA-DOAP06340 PPP3CC-204ENST00000518852 1598 ntTSL 2 BASIC31.23■■■□□ 2.59
HLA-DOAP06340 CLEC3B-202ENST00000428034 752 ntTSL 2 BASIC31.23■■■□□ 2.59
HLA-DOAP06340 RPS2-202ENST00000526522 924 ntTSL 2 BASIC31.23■■■□□ 2.59
HLA-DOAP06340 GKAP1-203ENST00000376371 1778 ntAPPRIS P1 TSL 1 (best) BASIC31.22■■■□□ 2.59
HLA-DOAP06340 WSB2-211ENST00000544233 2503 ntTSL 2 BASIC31.22■■■□□ 2.59
HLA-DOAP06340 TRIM52-AS1-203ENST00000509252 529 ntTSL 3 BASIC31.22■■■□□ 2.59
HLA-DOAP06340 PANK2-207ENST00000610179 1807 ntAPPRIS ALT2 TSL 1 (best) BASIC31.21■■■□□ 2.59
HLA-DOAP06340 AGPS-202ENST00000409888 815 ntTSL 4 BASIC31.21■■■□□ 2.59
HLA-DOAP06340 MIR3648-2-201ENST00000581792 180 ntBASIC31.21■■■□□ 2.59
HLA-DOAP06340 MIR3648-1-201ENST00000615959 180 ntBASIC31.21■■■□□ 2.59
HLA-DOAP06340 C5orf66-AS1-201ENST00000507035 843 ntTSL 2 BASIC31.2■■■□□ 2.59
HLA-DOAP06340 GDI1-215ENST00000630693 786 ntTSL 4 BASIC31.2■■■□□ 2.59
HLA-DOAP06340 AC010864.1-201ENST00000609407 1511 ntBASIC31.19■■■□□ 2.58
HLA-DOAP06340 MIR639-201ENST00000384974 98 ntBASIC31.18■■■□□ 2.58
HLA-DOAP06340 AC016575.1-201ENST00000607026 382 ntBASIC31.17■■■□□ 2.58
HLA-DOAP06340 GAL3ST1-204ENST00000402369 1712 ntAPPRIS P1 TSL 3 BASIC31.17■■■□□ 2.58
HLA-DOAP06340 H2AFV-204ENST00000350771 687 ntTSL 2 BASIC31.16■■■□□ 2.58
HLA-DOAP06340 AL118558.1-203ENST00000553701 447 ntTSL 3 BASIC31.16■■■□□ 2.58
HLA-DOAP06340 EMX1-201ENST00000258106 2188 ntAPPRIS P1 TSL 1 (best) BASIC31.16■■■□□ 2.58
HLA-DOAP06340 HSD17B1-201ENST00000225929 1265 ntAPPRIS ALT2 TSL 2 BASIC31.15■■■□□ 2.58
HLA-DOAP06340 P2RX2-203ENST00000350048 1344 ntTSL 1 (best) BASIC31.15■■■□□ 2.58
HLA-DOAP06340 MAPK12-201ENST00000215659 1918 ntAPPRIS P1 TSL 1 (best) BASIC31.14■■■□□ 2.58
HLA-DOAP06340 CR559946.2-201ENST00000623684 991 ntBASIC31.14■■■□□ 2.58
HLA-DOAP06340 KRT18-201ENST00000388835 1562 ntAPPRIS P1 TSL 1 (best) BASIC31.13■■■□□ 2.57
HLA-DOAP06340 GPI-201ENST00000356487 2210 ntAPPRIS P1 TSL 1 (best) BASIC31.13■■■□□ 2.57
HLA-DOAP06340 HNRNPAB-204ENST00000504898 1785 ntAPPRIS P4 TSL 1 (best) BASIC31.13■■■□□ 2.57
HLA-DOAP06340 FKBP1A-210ENST00000614856 562 ntTSL 2 BASIC31.13■■■□□ 2.57
HLA-DOAP06340 PELI3-203ENST00000524466 1671 ntTSL 1 (best) BASIC31.12■■■□□ 2.57
HLA-DOAP06340 C14orf80-202ENST00000334656 1358 ntAPPRIS ALT2 TSL 2 BASIC31.11■■■□□ 2.57
HLA-DOAP06340 STUB1-205ENST00000565677 1560 ntTSL 1 (best) BASIC31.11■■■□□ 2.57
HLA-DOAP06340 CALM3-209ENST00000597743 577 ntTSL 4 BASIC31.11■■■□□ 2.57
HLA-DOAP06340 AURKAIP1-203ENST00000338370 1072 ntAPPRIS P1 TSL 1 (best) BASIC31.1■■■□□ 2.57
HLA-DOAP06340 MIR4449-201ENST00000578365 66 ntBASIC31.1■■■□□ 2.57
HLA-DOAP06340 ABHD17A-202ENST00000292577 1757 ntAPPRIS P1 TSL 1 (best) BASIC31.1■■■□□ 2.57
HLA-DOAP06340 TUSC1-201ENST00000358022 2052 ntAPPRIS P1 BASIC31.09■■■□□ 2.57
HLA-DOAP06340 RPS2-201ENST00000343262 985 ntAPPRIS P1 TSL 1 (best) BASIC31.09■■■□□ 2.57
HLA-DOAP06340 COL13A1-212ENST00000520133 1833 ntTSL 5 BASIC31.09■■■□□ 2.57
HLA-DOAP06340 PGM5-201ENST00000396392 1782 ntTSL 1 (best) BASIC31.09■■■□□ 2.57
HLA-DOAP06340 ADRA1D-201ENST00000379453 2728 ntAPPRIS P1 TSL 1 (best) BASIC31.08■■■□□ 2.57
HLA-DOAP06340 GADD45G-201ENST00000252506 1065 ntAPPRIS P1 TSL 1 (best) BASIC31.08■■■□□ 2.57
HLA-DOAP06340 CERS1-201ENST00000429504 2094 ntTSL 1 (best) BASIC31.08■■■□□ 2.57
HLA-DOAP06340 EBPL-201ENST00000242827 914 ntAPPRIS P1 TSL 1 (best) BASIC31.07■■■□□ 2.56
HLA-DOAP06340 ZBTB7A-202ENST00000601588 2083 ntAPPRIS P1 TSL 1 (best) BASIC31.06■■■□□ 2.56
HLA-DOAP06340 AC008105.3-203ENST00000591365 2238 ntTSL 2 BASIC31.06■■■□□ 2.56
HLA-DOAP06340 SLC35D2-203ENST00000375259 1361 ntTSL 1 (best) BASIC31.05■■■□□ 2.56
HLA-DOAP06340 SMDT1-201ENST00000331479 1567 ntAPPRIS P1 TSL 1 (best) BASIC31.05■■■□□ 2.56
HLA-DOAP06340 FAM189B-210ENST00000621094 1335 ntTSL 1 (best) BASIC31.05■■■□□ 2.56
HLA-DOAP06340 C11orf95-204ENST00000546282 390 ntTSL 3 BASIC31.05■■■□□ 2.56
HLA-DOAP06340 DUX4L13-201ENST00000554103 1267 ntBASIC31.05■■■□□ 2.56
HLA-DOAP06340 DUX4L15-201ENST00000611059 1267 ntBASIC31.05■■■□□ 2.56
HLA-DOAP06340 DUX4L23-201ENST00000615195 1269 ntBASIC31.05■■■□□ 2.56
HLA-DOAP06340 DUX4L24-201ENST00000617576 1269 ntBASIC31.05■■■□□ 2.56
HLA-DOAP06340 DUX4L22-201ENST00000618238 1269 ntBASIC31.05■■■□□ 2.56
HLA-DOAP06340 DUX4L20-201ENST00000619712 1269 ntBASIC31.05■■■□□ 2.56
HLA-DOAP06340 DUX4L21-201ENST00000622058 1269 ntBASIC31.05■■■□□ 2.56
HLA-DOAP06340 DUX4L10-201ENST00000622460 1267 ntBASIC31.05■■■□□ 2.56
HLA-DOAP06340 DUX4L25-201ENST00000624915 1269 ntBASIC31.05■■■□□ 2.56
HLA-DOAP06340 CARS2-201ENST00000257347 1879 ntAPPRIS P1 TSL 1 (best) BASIC31.04■■■□□ 2.56
HLA-DOAP06340 RAB26-201ENST00000210187 1675 ntAPPRIS P1 TSL 1 (best) BASIC31.04■■■□□ 2.56
HLA-DOAP06340 FADS3-201ENST00000278829 1779 ntAPPRIS P1 TSL 1 (best) BASIC31.03■■■□□ 2.56
HLA-DOAP06340 ING2-201ENST00000302327 1189 ntAPPRIS P1 TSL 1 (best) BASIC31.03■■■□□ 2.56
HLA-DOAP06340 AP000251.1-201ENST00000433071 822 ntTSL 1 (best) BASIC31.03■■■□□ 2.56
HLA-DOAP06340 NREP-216ENST00000508870 540 ntAPPRIS P1 TSL 4 BASIC31.03■■■□□ 2.56
HLA-DOAP06340 FOXD3-201ENST00000371116 2086 ntAPPRIS P1 BASIC31.02■■■□□ 2.56
HLA-DOAP06340 RRAD-202ENST00000420652 1476 ntAPPRIS P1 TSL 1 (best) BASIC31.02■■■□□ 2.56
HLA-DOAP06340 WHRN-203ENST00000374057 1718 ntTSL 2 BASIC31.02■■■□□ 2.56
HLA-DOAP06340 RANBP1-202ENST00000402752 1132 ntAPPRIS ALT1 TSL 1 (best) BASIC31.02■■■□□ 2.56
HLA-DOAP06340 KCNK3-202ENST00000620977 1956 ntTSL 1 (best) BASIC31.01■■■□□ 2.56
HLA-DOAP06340 FAAP20-202ENST00000378546 729 ntAPPRIS P1 TSL 1 (best) BASIC31.01■■■□□ 2.55
HLA-DOAP06340 BARX1-201ENST00000253968 1533 ntAPPRIS P1 TSL 1 (best) BASIC31.01■■■□□ 2.55
HLA-DOAP06340 EBAG9-202ENST00000395785 1467 ntAPPRIS P1 TSL 1 (best) BASIC31.01■■■□□ 2.55
HLA-DOAP06340 PARD6A-201ENST00000219255 1248 ntAPPRIS P3 TSL 1 (best) BASIC31■■■□□ 2.55
HLA-DOAP06340 CHML-204ENST00000638121 920 ntTSL 2 BASIC30.99■■■□□ 2.55
HLA-DOAP06340 LINC00273-201ENST00000539813 1452 ntBASIC30.99■■■□□ 2.55
HLA-DOAP06340 TMEM251-202ENST00000415050 1303 ntTSL 2 BASIC30.98■■■□□ 2.55
Retrieved 100 of 98,524 protein–RNA pairs in 16.6 ms