Protein–RNA interactions for Protein: O95476

CTDNEP1, CTD nuclear envelope phosphatase 1, humanhuman

Predictions only

Length 244 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
CTDNEP1O95476 AC010864.1-201ENST00000609407 1511 ntBASIC30.75■■■□□ 2.51
CTDNEP1O95476 FGF18-201ENST00000274625 1986 ntAPPRIS P1 TSL 1 (best) BASIC30.74■■■□□ 2.51
CTDNEP1O95476 AL133346.1-201ENST00000435287 495 ntTSL 2 BASIC30.73■■■□□ 2.51
CTDNEP1O95476 PDPK1-203ENST00000389224 2416 ntTSL 2 BASIC30.73■■■□□ 2.51
CTDNEP1O95476 TPRA1-209ENST00000489960 1903 ntAPPRIS P1 TSL 5 BASIC30.73■■■□□ 2.51
CTDNEP1O95476 PIK3R2-208ENST00000617642 1446 ntTSL 5 BASIC30.73■■■□□ 2.51
CTDNEP1O95476 EXOC3L4-201ENST00000380069 2293 ntAPPRIS P1 TSL 1 (best) BASIC30.72■■■□□ 2.51
CTDNEP1O95476 LMO1-202ENST00000428101 1038 ntAPPRIS ALT1 TSL 1 (best) BASIC30.72■■■□□ 2.51
CTDNEP1O95476 HSD11B1L-209ENST00000577917 1553 ntTSL 1 (best) BASIC30.71■■■□□ 2.51
CTDNEP1O95476 PDCD2-215ENST00000614056 1287 ntTSL 2 BASIC30.71■■■□□ 2.51
CTDNEP1O95476 PGM5P2-201ENST00000613141 1980 ntTSL 1 (best) BASIC30.71■■■□□ 2.51
CTDNEP1O95476 SHF-206ENST00000560471 2499 ntTSL 5 BASIC30.71■■■□□ 2.51
CTDNEP1O95476 TPI1-201ENST00000229270 1763 ntTSL 1 (best) BASIC30.71■■■□□ 2.51
CTDNEP1O95476 PLEKHG6-206ENST00000536531 1683 ntTSL 1 (best) BASIC30.71■■■□□ 2.51
CTDNEP1O95476 ACOT7-201ENST00000361521 2429 ntAPPRIS ALT2 TSL 1 (best) BASIC30.71■■■□□ 2.51
CTDNEP1O95476 SECTM1-201ENST00000269389 2235 ntAPPRIS P2 TSL 1 (best) BASIC30.7■■■□□ 2.51
CTDNEP1O95476 VEGFA-231ENST00000640499 1188 ntAPPRIS P3 TSL 1 (best) BASIC30.69■■■□□ 2.5
CTDNEP1O95476 STUB1-205ENST00000565677 1560 ntTSL 1 (best) BASIC30.68■■■□□ 2.5
CTDNEP1O95476 ZNF787-203ENST00000610935 1925 ntAPPRIS P1 TSL 1 (best) BASIC30.68■■■□□ 2.5
CTDNEP1O95476 IRX1-201ENST00000302006 1858 ntAPPRIS P1 TSL 1 (best) BASIC30.67■■■□□ 2.5
CTDNEP1O95476 PSMG4-205ENST00000419065 629 ntTSL 2 BASIC30.67■■■□□ 2.5
CTDNEP1O95476 ARHGAP22-202ENST00000374170 2107 ntTSL 5 BASIC30.66■■■□□ 2.5
CTDNEP1O95476 AL139393.1-201ENST00000417479 573 ntTSL 5 BASIC30.66■■■□□ 2.5
CTDNEP1O95476 PQLC1-203ENST00000397778 2555 ntAPPRIS P3 TSL 1 (best) BASIC30.65■■■□□ 2.5
CTDNEP1O95476 FSD1L-208ENST00000495708 1906 ntTSL 1 (best) BASIC30.65■■■□□ 2.5
CTDNEP1O95476 HOPX-206ENST00000503639 1248 ntAPPRIS P1 TSL 1 (best) BASIC30.64■■■□□ 2.5
CTDNEP1O95476 MYLIP-202ENST00000356840 1666 ntAPPRIS P1 TSL 1 (best) BASIC30.64■■■□□ 2.5
CTDNEP1O95476 NMB-202ENST00000394588 1017 ntTSL 1 (best) BASIC30.63■■■□□ 2.49
CTDNEP1O95476 HOXB3-212ENST00000498678 2196 ntAPPRIS P1 TSL 2 BASIC30.63■■■□□ 2.49
CTDNEP1O95476 MIR762-201ENST00000390236 83 ntBASIC30.61■■■□□ 2.49
CTDNEP1O95476 NOXA1-201ENST00000341349 1678 ntAPPRIS P1 TSL 1 (best) BASIC30.61■■■□□ 2.49
CTDNEP1O95476 ABHD17A-202ENST00000292577 1757 ntAPPRIS P1 TSL 1 (best) BASIC30.61■■■□□ 2.49
CTDNEP1O95476 HDGF-210ENST00000537739 2073 ntAPPRIS P1 TSL 1 (best) BASIC30.61■■■□□ 2.49
CTDNEP1O95476 BCL7C-201ENST00000215115 1740 ntAPPRIS P1 TSL 1 (best) BASIC30.6■■■□□ 2.49
CTDNEP1O95476 ATP6V1E2-204ENST00000522587 1559 ntAPPRIS P1 TSL 3 BASIC30.6■■■□□ 2.49
CTDNEP1O95476 CIB1-201ENST00000328649 1247 ntAPPRIS P1 TSL 1 (best) BASIC30.59■■■□□ 2.49
CTDNEP1O95476 AC012629.2-201ENST00000606513 377 ntTSL 5 BASIC30.59■■■□□ 2.49
CTDNEP1O95476 CIB1-202ENST00000612800 1096 ntTSL 1 (best) BASIC30.59■■■□□ 2.49
CTDNEP1O95476 MNX1-207ENST00000543409 1620 ntAPPRIS ALT2 TSL 1 (best) BASIC30.58■■■□□ 2.49
CTDNEP1O95476 MISP3-201ENST00000269720 1424 ntAPPRIS ALT2 TSL 5 BASIC30.58■■■□□ 2.49
CTDNEP1O95476 ATF4-201ENST00000337304 2019 ntAPPRIS P1 TSL 1 (best) BASIC30.58■■■□□ 2.49
CTDNEP1O95476 RUNDC3A-206ENST00000590941 1675 ntTSL 1 (best) BASIC30.58■■■□□ 2.49
CTDNEP1O95476 LANCL3-203ENST00000614025 1469 ntTSL 2 BASIC30.57■■■□□ 2.48
CTDNEP1O95476 ECI1-203ENST00000562238 948 ntTSL 1 (best) BASIC30.56■■■□□ 2.48
CTDNEP1O95476 AL139393.2-201ENST00000608721 2025 ntBASIC30.56■■■□□ 2.48
CTDNEP1O95476 MKNK2-202ENST00000309340 1744 ntAPPRIS ALT2 TSL 1 (best) BASIC30.56■■■□□ 2.48
CTDNEP1O95476 HNRNPAB-205ENST00000506259 1674 ntAPPRIS ALT2 TSL 1 (best) BASIC30.55■■■□□ 2.48
CTDNEP1O95476 CHPT1-201ENST00000229266 1585 ntAPPRIS P2 TSL 1 (best) BASIC30.55■■■□□ 2.48
CTDNEP1O95476 BATF3-201ENST00000243440 980 ntAPPRIS P1 TSL 1 (best) BASIC30.55■■■□□ 2.48
CTDNEP1O95476 H2AFV-205ENST00000381124 628 ntTSL 3 BASIC30.55■■■□□ 2.48
CTDNEP1O95476 SIGMAR1-203ENST00000378892 1743 ntTSL 2 BASIC30.53■■■□□ 2.48
CTDNEP1O95476 SP8-201ENST00000361443 1714 ntAPPRIS P3 TSL 1 (best) BASIC30.53■■■□□ 2.48
CTDNEP1O95476 CHML-205ENST00000638160 705 ntTSL 3 BASIC30.52■■■□□ 2.48
CTDNEP1O95476 RCC1L-205ENST00000618035 1409 ntTSL 1 (best) BASIC30.52■■■□□ 2.48
CTDNEP1O95476 RDX-210ENST00000530301 1549 ntTSL 1 (best) BASIC30.51■■■□□ 2.47
CTDNEP1O95476 ECI1-207ENST00000570258 1512 ntAPPRIS ALT2 TSL 5 BASIC30.51■■■□□ 2.47
CTDNEP1O95476 COL13A1-214ENST00000522165 2061 ntAPPRIS ALT2 TSL 5 BASIC30.5■■■□□ 2.47
CTDNEP1O95476 GFRA4-202ENST00000319242 900 ntAPPRIS P4 TSL 1 (best) BASIC30.5■■■□□ 2.47
CTDNEP1O95476 S100A10-202ENST00000368811 1202 ntAPPRIS P1 TSL 1 (best) BASIC30.5■■■□□ 2.47
CTDNEP1O95476 AC012615.2-201ENST00000586259 447 ntTSL 4 BASIC30.5■■■□□ 2.47
CTDNEP1O95476 MARCH11-201ENST00000332432 1741 ntAPPRIS P1 TSL 5 BASIC30.5■■■□□ 2.47
CTDNEP1O95476 SLC30A10-202ENST00000366926 1915 ntAPPRIS P1 TSL 1 (best) BASIC30.49■■■□□ 2.47
CTDNEP1O95476 RUNX2-205ENST00000465038 1770 ntAPPRIS P4 TSL 5 BASIC30.49■■■□□ 2.47
CTDNEP1O95476 FZD2-201ENST00000315323 2112 ntAPPRIS P1 BASIC30.48■■■□□ 2.47
CTDNEP1O95476 SEC61G-204ENST00000450622 512 ntAPPRIS P1 TSL 2 BASIC30.48■■■□□ 2.47
CTDNEP1O95476 ENKD1-201ENST00000243878 1579 ntAPPRIS P1 TSL 1 (best) BASIC30.48■■■□□ 2.47
CTDNEP1O95476 SPATA5L1-208ENST00000638607 1863 ntTSL 2 BASIC30.48■■■□□ 2.47
CTDNEP1O95476 HNRNPAB-204ENST00000504898 1785 ntAPPRIS P4 TSL 1 (best) BASIC30.47■■■□□ 2.47
CTDNEP1O95476 NMB-201ENST00000360476 1007 ntAPPRIS P1 TSL 1 (best) BASIC30.47■■■□□ 2.47
CTDNEP1O95476 EFNA1-202ENST00000368407 1926 ntAPPRIS P1 TSL 1 (best) BASIC30.47■■■□□ 2.47
CTDNEP1O95476 DPF1-202ENST00000412732 2303 ntTSL 1 (best) BASIC30.46■■■□□ 2.47
CTDNEP1O95476 ZFAND2B-208ENST00000409594 2021 ntTSL 2 BASIC30.46■■■□□ 2.47
CTDNEP1O95476 TOMM40-201ENST00000252487 1707 ntAPPRIS P2 TSL 1 (best) BASIC30.45■■■□□ 2.47
CTDNEP1O95476 TOMM40-202ENST00000405636 1709 ntAPPRIS P2 TSL 1 (best) BASIC30.45■■■□□ 2.47
CTDNEP1O95476 FEV-201ENST00000295727 1879 ntAPPRIS P1 TSL 1 (best) BASIC30.45■■■□□ 2.47
CTDNEP1O95476 HNRNPLP2-201ENST00000568980 1570 ntBASIC30.45■■■□□ 2.46
CTDNEP1O95476 ITGA9-203ENST00000422441 2282 ntTSL 1 (best) BASIC30.44■■■□□ 2.46
CTDNEP1O95476 TSEN34-203ENST00000396388 1349 ntAPPRIS P1 TSL 1 (best) BASIC30.44■■■□□ 2.46
CTDNEP1O95476 GRK6-206ENST00000507633 1660 ntTSL 5 BASIC30.42■■■□□ 2.46
CTDNEP1O95476 MTCH1-202ENST00000373627 2057 ntAPPRIS P1 TSL 1 (best) BASIC30.42■■■□□ 2.46
CTDNEP1O95476 AP002884.3-203ENST00000419895 1711 ntTSL 2 BASIC30.42■■■□□ 2.46
CTDNEP1O95476 TESK1-201ENST00000336395 2421 ntAPPRIS P1 TSL 1 (best) BASIC30.41■■■□□ 2.46
CTDNEP1O95476 WSB2-201ENST00000315436 2646 ntAPPRIS P1 TSL 1 (best) BASIC30.41■■■□□ 2.46
CTDNEP1O95476 COL13A1-213ENST00000520267 2276 ntAPPRIS ALT2 TSL 5 BASIC30.4■■■□□ 2.46
CTDNEP1O95476 GTF3C4-202ENST00000483873 1417 ntTSL 3 BASIC30.39■■■□□ 2.46
CTDNEP1O95476 EBAG9-202ENST00000395785 1467 ntAPPRIS P1 TSL 1 (best) BASIC30.38■■■□□ 2.45
CTDNEP1O95476 THAP11-201ENST00000303596 2114 ntAPPRIS P1 BASIC30.38■■■□□ 2.45
CTDNEP1O95476 AC005559.1-201ENST00000589661 871 ntBASIC30.37■■■□□ 2.45
CTDNEP1O95476 IL17D-201ENST00000304920 1861 ntAPPRIS P1 TSL 1 (best) BASIC30.37■■■□□ 2.45
CTDNEP1O95476 AP000547.3-202ENST00000592107 1019 ntTSL 1 (best) BASIC30.36■■■□□ 2.45
CTDNEP1O95476 LYNX1-208ENST00000615007 1293 ntAPPRIS P1 TSL 1 (best) BASIC30.36■■■□□ 2.45
CTDNEP1O95476 ADAP1-201ENST00000265846 2363 ntAPPRIS P1 TSL 1 (best) BASIC30.36■■■□□ 2.45
CTDNEP1O95476 CACNG6-202ENST00000346968 645 ntTSL 5 BASIC30.35■■■□□ 2.45
CTDNEP1O95476 DUX4L28-201ENST00000623687 678 ntBASIC30.35■■■□□ 2.45
CTDNEP1O95476 AC127502.1-201ENST00000399971 1502 ntBASIC30.34■■■□□ 2.45
CTDNEP1O95476 TERF2-207ENST00000567296 1129 ntTSL 1 (best) BASIC30.34■■■□□ 2.45
CTDNEP1O95476 CCDC160-202ENST00000517294 1790 ntAPPRIS P1 TSL 5 BASIC30.32■■■□□ 2.44
CTDNEP1O95476 CGGBP1-206ENST00000482016 1147 ntAPPRIS P1 TSL 2 BASIC30.31■■■□□ 2.44
CTDNEP1O95476 TXNL4A-210ENST00000591711 669 ntTSL 2 BASIC30.31■■■□□ 2.44
CTDNEP1O95476 KLC2-205ENST00000394078 1557 ntTSL 5 BASIC30.31■■■□□ 2.44
Retrieved 100 of 98,524 protein–RNA pairs in 11.5 ms