Protein–RNA interactions for Protein: O76039

CDKL5, Cyclin-dependent kinase-like 5, humanhuman

Predictions only

Length 1,030 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
CDKL5O76039 LANCL3-203ENST00000614025 1469 ntTSL 2 BASIC30.59■■■□□ 2.49
CDKL5O76039 LYNX1-208ENST00000615007 1293 ntAPPRIS P1 TSL 1 (best) BASIC30.59■■■□□ 2.49
CDKL5O76039 ABL1-201ENST00000318560 5766 ntTSL 1 (best) BASIC30.59■■■□□ 2.49
CDKL5O76039 ECI1-207ENST00000570258 1512 ntAPPRIS ALT2 TSL 5 BASIC30.58■■■□□ 2.49
CDKL5O76039 H2AFV-205ENST00000381124 628 ntTSL 3 BASIC30.58■■■□□ 2.49
CDKL5O76039 EFNA3-201ENST00000368408 1782 ntAPPRIS P1 TSL 1 (best) BASIC30.58■■■□□ 2.49
CDKL5O76039 SNX24-201ENST00000261369 2158 ntAPPRIS P1 TSL 1 (best) BASIC30.58■■■□□ 2.49
CDKL5O76039 STUB1-205ENST00000565677 1560 ntTSL 1 (best) BASIC30.58■■■□□ 2.49
CDKL5O76039 VEGFA-231ENST00000640499 1188 ntAPPRIS P3 TSL 1 (best) BASIC30.57■■■□□ 2.48
CDKL5O76039 RUNDC3A-206ENST00000590941 1675 ntTSL 1 (best) BASIC30.57■■■□□ 2.48
CDKL5O76039 MAF-201ENST00000326043 2646 ntAPPRIS P3 TSL 1 (best) BASIC30.57■■■□□ 2.48
CDKL5O76039 AGFG1-205ENST00000409979 2089 ntAPPRIS ALT1 TSL 5 BASIC30.56■■■□□ 2.48
CDKL5O76039 BATF3-201ENST00000243440 980 ntAPPRIS P1 TSL 1 (best) BASIC30.56■■■□□ 2.48
CDKL5O76039 AGAP1-202ENST00000336665 5427 ntAPPRIS P3 TSL 1 (best) BASIC30.56■■■□□ 2.48
CDKL5O76039 MAPK13-201ENST00000211287 2052 ntAPPRIS P1 TSL 1 (best) BASIC30.56■■■□□ 2.48
CDKL5O76039 FOXQ1-201ENST00000296839 2309 ntAPPRIS P1 BASIC30.56■■■□□ 2.48
CDKL5O76039 MNX1-207ENST00000543409 1620 ntAPPRIS ALT2 TSL 1 (best) BASIC30.55■■■□□ 2.48
CDKL5O76039 PCSK6-201ENST00000331826 2309 ntTSL 5 BASIC30.55■■■□□ 2.48
CDKL5O76039 GFRA4-202ENST00000319242 900 ntAPPRIS P4 TSL 1 (best) BASIC30.55■■■□□ 2.48
CDKL5O76039 YAP1-204ENST00000526343 2393 ntTSL 5 BASIC30.55■■■□□ 2.48
CDKL5O76039 FSD1L-208ENST00000495708 1906 ntTSL 1 (best) BASIC30.54■■■□□ 2.48
CDKL5O76039 S100A10-202ENST00000368811 1202 ntAPPRIS P1 TSL 1 (best) BASIC30.54■■■□□ 2.48
CDKL5O76039 BCL7C-201ENST00000215115 1740 ntAPPRIS P1 TSL 1 (best) BASIC30.53■■■□□ 2.48
CDKL5O76039 MKNK2-202ENST00000309340 1744 ntAPPRIS ALT2 TSL 1 (best) BASIC30.53■■■□□ 2.48
CDKL5O76039 IRX1-201ENST00000302006 1858 ntAPPRIS P1 TSL 1 (best) BASIC30.53■■■□□ 2.48
CDKL5O76039 ACTG1-210ENST00000575842 2256 ntAPPRIS P1 TSL 1 (best) BASIC30.53■■■□□ 2.48
CDKL5O76039 NOXA1-201ENST00000341349 1678 ntAPPRIS P1 TSL 1 (best) BASIC30.52■■■□□ 2.48
CDKL5O76039 ECI1-203ENST00000562238 948 ntTSL 1 (best) BASIC30.51■■■□□ 2.47
CDKL5O76039 SCX-201ENST00000567180 999 ntAPPRIS P1 TSL 1 (best) BASIC30.51■■■□□ 2.47
CDKL5O76039 AC005559.1-201ENST00000589661 871 ntBASIC30.51■■■□□ 2.47
CDKL5O76039 PGM5P2-201ENST00000613141 1980 ntTSL 1 (best) BASIC30.51■■■□□ 2.47
CDKL5O76039 TPRA1-209ENST00000489960 1903 ntAPPRIS P1 TSL 5 BASIC30.5■■■□□ 2.47
CDKL5O76039 RPS2-209ENST00000529806 993 ntTSL 3 BASIC30.5■■■□□ 2.47
CDKL5O76039 PQLC1-202ENST00000357575 2475 ntAPPRIS ALT1 TSL 5 BASIC30.5■■■□□ 2.47
CDKL5O76039 ABHD17A-202ENST00000292577 1757 ntAPPRIS P1 TSL 1 (best) BASIC30.49■■■□□ 2.47
CDKL5O76039 GGA1-204ENST00000381756 2107 ntTSL 1 (best) BASIC30.49■■■□□ 2.47
CDKL5O76039 SP8-201ENST00000361443 1714 ntAPPRIS P3 TSL 1 (best) BASIC30.48■■■□□ 2.47
CDKL5O76039 WDSUB1-205ENST00000409990 1920 ntAPPRIS P1 TSL 2 BASIC30.48■■■□□ 2.47
CDKL5O76039 ATP6V1E2-204ENST00000522587 1559 ntAPPRIS P1 TSL 3 BASIC30.48■■■□□ 2.47
CDKL5O76039 HNRNPAB-205ENST00000506259 1674 ntAPPRIS ALT2 TSL 1 (best) BASIC30.47■■■□□ 2.47
CDKL5O76039 ZNF787-203ENST00000610935 1925 ntAPPRIS P1 TSL 1 (best) BASIC30.47■■■□□ 2.47
CDKL5O76039 AP000547.3-202ENST00000592107 1019 ntTSL 1 (best) BASIC30.46■■■□□ 2.47
CDKL5O76039 FGF18-201ENST00000274625 1986 ntAPPRIS P1 TSL 1 (best) BASIC30.46■■■□□ 2.47
CDKL5O76039 MEX3D-201ENST00000402693 2850 ntAPPRIS P2 TSL 1 (best) BASIC30.45■■■□□ 2.47
CDKL5O76039 CACNG6-202ENST00000346968 645 ntTSL 5 BASIC30.45■■■□□ 2.47
CDKL5O76039 CHPT1-201ENST00000229266 1585 ntAPPRIS P2 TSL 1 (best) BASIC30.45■■■□□ 2.46
CDKL5O76039 BIN1-204ENST00000348750 2074 ntTSL 1 (best) BASIC30.44■■■□□ 2.46
CDKL5O76039 NMB-201ENST00000360476 1007 ntAPPRIS P1 TSL 1 (best) BASIC30.44■■■□□ 2.46
CDKL5O76039 CGGBP1-206ENST00000482016 1147 ntAPPRIS P1 TSL 2 BASIC30.44■■■□□ 2.46
CDKL5O76039 RCC1L-205ENST00000618035 1409 ntTSL 1 (best) BASIC30.44■■■□□ 2.46
CDKL5O76039 TPRA1-202ENST00000355552 1933 ntAPPRIS P1 TSL 1 (best) BASIC30.42■■■□□ 2.46
CDKL5O76039 TPI1-201ENST00000229270 1763 ntTSL 1 (best) BASIC30.41■■■□□ 2.46
CDKL5O76039 RUNX2-205ENST00000465038 1770 ntAPPRIS P4 TSL 5 BASIC30.41■■■□□ 2.46
CDKL5O76039 HOXB3-212ENST00000498678 2196 ntAPPRIS P1 TSL 2 BASIC30.41■■■□□ 2.46
CDKL5O76039 TSEN34-203ENST00000396388 1349 ntAPPRIS P1 TSL 1 (best) BASIC30.41■■■□□ 2.46
CDKL5O76039 HNRNPAB-204ENST00000504898 1785 ntAPPRIS P4 TSL 1 (best) BASIC30.41■■■□□ 2.46
CDKL5O76039 AC139426.1-201ENST00000568218 2529 ntBASIC30.4■■■□□ 2.46
CDKL5O76039 PGAM5-201ENST00000317555 1182 ntTSL 1 (best) BASIC30.4■■■□□ 2.46
CDKL5O76039 TESK1-206ENST00000620767 2438 ntAPPRIS P1 TSL 5 BASIC30.39■■■□□ 2.46
CDKL5O76039 VWA1-201ENST00000338660 2147 ntTSL 2 BASIC30.39■■■□□ 2.46
CDKL5O76039 FAM185A-202ENST00000413034 1179 ntAPPRIS P4 TSL 5 BASIC30.39■■■□□ 2.46
CDKL5O76039 TERF2-207ENST00000567296 1129 ntTSL 1 (best) BASIC30.39■■■□□ 2.46
CDKL5O76039 SIGMAR1-203ENST00000378892 1743 ntTSL 2 BASIC30.39■■■□□ 2.45
CDKL5O76039 AP006261.1-201ENST00000584783 668 ntBASIC30.38■■■□□ 2.45
CDKL5O76039 ATF4-201ENST00000337304 2019 ntAPPRIS P1 TSL 1 (best) BASIC30.38■■■□□ 2.45
CDKL5O76039 GRK6-206ENST00000507633 1660 ntTSL 5 BASIC30.38■■■□□ 2.45
CDKL5O76039 ACOT7-201ENST00000361521 2429 ntAPPRIS ALT2 TSL 1 (best) BASIC30.37■■■□□ 2.45
CDKL5O76039 ENKD1-201ENST00000243878 1579 ntAPPRIS P1 TSL 1 (best) BASIC30.37■■■□□ 2.45
CDKL5O76039 RTN4R-201ENST00000043402 2157 ntAPPRIS P2 TSL 1 (best) BASIC30.37■■■□□ 2.45
CDKL5O76039 NAA50-207ENST00000493900 962 ntAPPRIS ALT1 TSL 2 BASIC30.37■■■□□ 2.45
CDKL5O76039 MIR3665-201ENST00000578708 105 ntBASIC30.37■■■□□ 2.45
CDKL5O76039 PSMG4-202ENST00000380305 489 ntTSL 5 BASIC30.36■■■□□ 2.45
CDKL5O76039 MSANTD2-203ENST00000524950 1109 ntTSL 2 BASIC30.36■■■□□ 2.45
CDKL5O76039 RRAGC-201ENST00000373001 2732 ntAPPRIS P1 TSL 1 (best) BASIC30.35■■■□□ 2.45
CDKL5O76039 TXNL4A-210ENST00000591711 669 ntTSL 2 BASIC30.35■■■□□ 2.45
CDKL5O76039 DUX4L28-201ENST00000623687 678 ntBASIC30.35■■■□□ 2.45
CDKL5O76039 CAPNS1-217ENST00000629983 799 ntTSL 5 BASIC30.35■■■□□ 2.45
CDKL5O76039 GTF3C4-202ENST00000483873 1417 ntTSL 3 BASIC30.35■■■□□ 2.45
CDKL5O76039 SECTM1-201ENST00000269389 2235 ntAPPRIS P2 TSL 1 (best) BASIC30.34■■■□□ 2.45
CDKL5O76039 AL139393.2-201ENST00000608721 2025 ntBASIC30.34■■■□□ 2.45
CDKL5O76039 AMZ2-201ENST00000359783 1722 ntTSL 5 BASIC30.33■■■□□ 2.45
CDKL5O76039 PPP1R14B-201ENST00000309318 982 ntAPPRIS P1 TSL 1 (best) BASIC30.33■■■□□ 2.45
CDKL5O76039 MARCH11-201ENST00000332432 1741 ntAPPRIS P1 TSL 5 BASIC30.33■■■□□ 2.45
CDKL5O76039 SLC30A10-202ENST00000366926 1915 ntAPPRIS P1 TSL 1 (best) BASIC30.32■■■□□ 2.44
CDKL5O76039 NKIRAS2-202ENST00000316082 833 ntTSL 5 BASIC30.32■■■□□ 2.44
CDKL5O76039 TOMM40-201ENST00000252487 1707 ntAPPRIS P2 TSL 1 (best) BASIC30.3■■■□□ 2.44
CDKL5O76039 TOMM40-202ENST00000405636 1709 ntAPPRIS P2 TSL 1 (best) BASIC30.3■■■□□ 2.44
CDKL5O76039 ZFP90-204ENST00000564323 560 ntTSL 4 BASIC30.3■■■□□ 2.44
CDKL5O76039 ZFP90-219ENST00000611381 695 ntTSL 1 (best) BASIC30.3■■■□□ 2.44
CDKL5O76039 EBAG9-202ENST00000395785 1467 ntAPPRIS P1 TSL 1 (best) BASIC30.29■■■□□ 2.44
CDKL5O76039 CERS2-205ENST00000368954 2505 ntAPPRIS P1 TSL 1 (best) BASIC30.29■■■□□ 2.44
CDKL5O76039 MAD2L2-205ENST00000376669 864 ntTSL 3 BASIC30.28■■■□□ 2.44
CDKL5O76039 EXOC3L4-201ENST00000380069 2293 ntAPPRIS P1 TSL 1 (best) BASIC30.27■■■□□ 2.44
CDKL5O76039 AP002884.3-203ENST00000419895 1711 ntTSL 2 BASIC30.27■■■□□ 2.44
CDKL5O76039 TCEA2-202ENST00000343484 1235 ntAPPRIS P1 TSL 1 (best) BASIC30.26■■■□□ 2.43
CDKL5O76039 UBE2S-203ENST00000589978 496 ntTSL 5 BASIC30.26■■■□□ 2.43
CDKL5O76039 ST6GALNAC6-203ENST00000373142 2448 ntTSL 1 (best) BASIC30.26■■■□□ 2.43
CDKL5O76039 AC127502.1-201ENST00000399971 1502 ntBASIC30.26■■■□□ 2.43
CDKL5O76039 FEV-201ENST00000295727 1879 ntAPPRIS P1 TSL 1 (best) BASIC30.25■■■□□ 2.43
CDKL5O76039 MTCH1-202ENST00000373627 2057 ntAPPRIS P1 TSL 1 (best) BASIC30.25■■■□□ 2.43
Retrieved 100 of 98,524 protein–RNA pairs in 60.7 ms