Protein–RNA interactions for Protein: A6NHR9

SMCHD1, Structural maintenance of chromosomes flexible hinge domain-containing protein 1, humanhuman

Predictions only

Length 2,005 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
SMCHD1A6NHR9 HINT2-201ENST00000259667 628 ntAPPRIS P1 TSL 1 (best) BASIC30.49■■■□□ 2.47
SMCHD1A6NHR9 AC021231.2-201ENST00000594613 730 ntBASIC30.48■■■□□ 2.47
SMCHD1A6NHR9 DTNBP1-202ENST00000344537 1403 ntAPPRIS P1 TSL 1 (best) BASIC30.48■■■□□ 2.47
SMCHD1A6NHR9 MSX1-201ENST00000382723 1939 ntAPPRIS P1 TSL 1 (best) BASIC30.48■■■□□ 2.47
SMCHD1A6NHR9 GRPEL2-204ENST00000513661 546 ntTSL 2 BASIC30.47■■■□□ 2.47
SMCHD1A6NHR9 AVEN-201ENST00000306730 1605 ntAPPRIS P1 TSL 1 (best) BASIC30.47■■■□□ 2.47
SMCHD1A6NHR9 RP9P-201ENST00000381639 1303 ntTSL 1 (best) BASIC30.46■■■□□ 2.47
SMCHD1A6NHR9 MRPL9-201ENST00000368829 882 ntAPPRIS ALT2 TSL 2 BASIC30.46■■■□□ 2.47
SMCHD1A6NHR9 AL589765.4-201ENST00000512280 382 ntTSL 3 BASIC30.46■■■□□ 2.47
SMCHD1A6NHR9 AC008105.3-203ENST00000591365 2238 ntTSL 2 BASIC30.46■■■□□ 2.47
SMCHD1A6NHR9 MAFA-201ENST00000333480 2347 ntAPPRIS P1 BASIC30.45■■■□□ 2.47
SMCHD1A6NHR9 MAD2L2-207ENST00000376692 1118 ntAPPRIS P1 TSL 1 (best) BASIC30.45■■■□□ 2.46
SMCHD1A6NHR9 TUSC1-201ENST00000358022 2052 ntAPPRIS P1 BASIC30.44■■■□□ 2.46
SMCHD1A6NHR9 VEGFA-226ENST00000611736 1239 ntTSL 1 (best) BASIC30.44■■■□□ 2.46
SMCHD1A6NHR9 NOP53-201ENST00000246802 1528 ntAPPRIS P1 TSL 1 (best) BASIC30.44■■■□□ 2.46
SMCHD1A6NHR9 MIR3648-2-201ENST00000581792 180 ntBASIC30.44■■■□□ 2.46
SMCHD1A6NHR9 MIR3648-1-201ENST00000615959 180 ntBASIC30.44■■■□□ 2.46
SMCHD1A6NHR9 CIB2-204ENST00000557846 934 ntTSL 3 BASIC30.43■■■□□ 2.46
SMCHD1A6NHR9 GDI1-215ENST00000630693 786 ntTSL 4 BASIC30.43■■■□□ 2.46
SMCHD1A6NHR9 HOXB3-210ENST00000489475 1845 ntTSL 2 BASIC30.42■■■□□ 2.46
SMCHD1A6NHR9 HMX1-201ENST00000400677 1895 ntAPPRIS P1 TSL 1 (best) BASIC30.42■■■□□ 2.46
SMCHD1A6NHR9 PPP3CC-204ENST00000518852 1598 ntTSL 2 BASIC30.42■■■□□ 2.46
SMCHD1A6NHR9 CERS2-201ENST00000271688 2544 ntAPPRIS P1 TSL 5 BASIC30.41■■■□□ 2.46
SMCHD1A6NHR9 GLT8D1-201ENST00000266014 1849 ntAPPRIS P1 TSL 1 (best) BASIC30.41■■■□□ 2.46
SMCHD1A6NHR9 DDN-AS1-203ENST00000552284 934 ntTSL 3 BASIC30.41■■■□□ 2.46
SMCHD1A6NHR9 AC016575.1-201ENST00000607026 382 ntBASIC30.41■■■□□ 2.46
SMCHD1A6NHR9 GLRB-203ENST00000509282 1757 ntAPPRIS P1 TSL 1 (best) BASIC30.41■■■□□ 2.46
SMCHD1A6NHR9 AP002884.3-203ENST00000419895 1711 ntTSL 2 BASIC30.39■■■□□ 2.46
SMCHD1A6NHR9 TFEB-204ENST00000373033 2331 ntAPPRIS P1 TSL 1 (best) BASIC30.39■■■□□ 2.46
SMCHD1A6NHR9 MACF1-219ENST00000484793 834 ntTSL 2 BASIC30.39■■■□□ 2.45
SMCHD1A6NHR9 KRT18-201ENST00000388835 1562 ntAPPRIS P1 TSL 1 (best) BASIC30.38■■■□□ 2.45
SMCHD1A6NHR9 CENPV-201ENST00000299736 1165 ntAPPRIS P1 TSL 1 (best) BASIC30.38■■■□□ 2.45
SMCHD1A6NHR9 MBOAT7-203ENST00000391754 1797 ntTSL 1 (best) BASIC30.37■■■□□ 2.45
SMCHD1A6NHR9 MAPK12-201ENST00000215659 1918 ntAPPRIS P1 TSL 1 (best) BASIC30.37■■■□□ 2.45
SMCHD1A6NHR9 COL13A1-212ENST00000520133 1833 ntTSL 5 BASIC30.37■■■□□ 2.45
SMCHD1A6NHR9 FADS3-201ENST00000278829 1779 ntAPPRIS P1 TSL 1 (best) BASIC30.36■■■□□ 2.45
SMCHD1A6NHR9 PLEKHJ1-201ENST00000326631 1206 ntAPPRIS P1 TSL 1 (best) BASIC30.36■■■□□ 2.45
SMCHD1A6NHR9 MIR639-201ENST00000384974 98 ntBASIC30.36■■■□□ 2.45
SMCHD1A6NHR9 KLHL35-204ENST00000539798 1936 ntAPPRIS P1 TSL 1 (best) BASIC30.36■■■□□ 2.45
SMCHD1A6NHR9 KCNK3-202ENST00000620977 1956 ntTSL 1 (best) BASIC30.36■■■□□ 2.45
SMCHD1A6NHR9 PELI3-203ENST00000524466 1671 ntTSL 1 (best) BASIC30.35■■■□□ 2.45
SMCHD1A6NHR9 SHC2-201ENST00000264554 2494 ntAPPRIS P1 TSL 1 (best) BASIC30.35■■■□□ 2.45
SMCHD1A6NHR9 UBP1-201ENST00000283628 2074 ntAPPRIS P3 TSL 2 BASIC30.35■■■□□ 2.45
SMCHD1A6NHR9 GAL3ST1-204ENST00000402369 1712 ntAPPRIS P1 TSL 3 BASIC30.34■■■□□ 2.45
SMCHD1A6NHR9 AC092647.5-201ENST00000426595 1732 ntAPPRIS P1 TSL 5 BASIC30.32■■■□□ 2.44
SMCHD1A6NHR9 CR559946.2-201ENST00000623684 991 ntBASIC30.32■■■□□ 2.44
SMCHD1A6NHR9 HSD17B1-201ENST00000225929 1265 ntAPPRIS ALT2 TSL 2 BASIC30.31■■■□□ 2.44
SMCHD1A6NHR9 AC010864.1-201ENST00000609407 1511 ntBASIC30.31■■■□□ 2.44
SMCHD1A6NHR9 PRSS41-201ENST00000399677 1127 ntAPPRIS P1 TSL 5 BASIC30.29■■■□□ 2.44
SMCHD1A6NHR9 PLEKHG6-206ENST00000536531 1683 ntTSL 1 (best) BASIC30.29■■■□□ 2.44
SMCHD1A6NHR9 RP9-201ENST00000297157 1121 ntAPPRIS P2 TSL 1 (best) BASIC30.29■■■□□ 2.44
SMCHD1A6NHR9 AGPS-202ENST00000409888 815 ntTSL 4 BASIC30.29■■■□□ 2.44
SMCHD1A6NHR9 CALM3-209ENST00000597743 577 ntTSL 4 BASIC30.29■■■□□ 2.44
SMCHD1A6NHR9 TRIM52-AS1-203ENST00000509252 529 ntTSL 3 BASIC30.28■■■□□ 2.44
SMCHD1A6NHR9 RNF166-209ENST00000567844 633 ntTSL 5 BASIC30.28■■■□□ 2.44
SMCHD1A6NHR9 TMEM251-202ENST00000415050 1303 ntTSL 2 BASIC30.27■■■□□ 2.44
SMCHD1A6NHR9 R3HDM4-208ENST00000626716 138 ntTSL 5 BASIC30.27■■■□□ 2.44
SMCHD1A6NHR9 CHPT1-205ENST00000549872 2001 ntAPPRIS ALT2 TSL 5 BASIC30.26■■■□□ 2.44
SMCHD1A6NHR9 CARS2-201ENST00000257347 1879 ntAPPRIS P1 TSL 1 (best) BASIC30.26■■■□□ 2.43
SMCHD1A6NHR9 H2AFV-204ENST00000350771 687 ntTSL 2 BASIC30.26■■■□□ 2.43
SMCHD1A6NHR9 CLEC3B-202ENST00000428034 752 ntTSL 2 BASIC30.25■■■□□ 2.43
SMCHD1A6NHR9 AL118558.1-203ENST00000553701 447 ntTSL 3 BASIC30.25■■■□□ 2.43
SMCHD1A6NHR9 U2AF1L5-201ENST00000610664 897 ntAPPRIS P5 TSL 1 (best) BASIC30.24■■■□□ 2.43
SMCHD1A6NHR9 C16orf95-205ENST00000567970 1031 ntAPPRIS ALT2 TSL 5 BASIC30.23■■■□□ 2.43
SMCHD1A6NHR9 FOXD3-201ENST00000371116 2086 ntAPPRIS P1 BASIC30.22■■■□□ 2.43
SMCHD1A6NHR9 RHOC-202ENST00000339083 1418 ntAPPRIS P1 TSL 1 (best) BASIC30.22■■■□□ 2.43
SMCHD1A6NHR9 ABHD17A-202ENST00000292577 1757 ntAPPRIS P1 TSL 1 (best) BASIC30.22■■■□□ 2.43
SMCHD1A6NHR9 STUB1-205ENST00000565677 1560 ntTSL 1 (best) BASIC30.22■■■□□ 2.43
SMCHD1A6NHR9 DPF1-204ENST00000416611 2341 ntTSL 5 BASIC30.2■■■□□ 2.43
SMCHD1A6NHR9 TRIOBP-205ENST00000407319 2125 ntAPPRIS P3 TSL 1 (best) BASIC30.2■■■□□ 2.43
SMCHD1A6NHR9 ENKD1-201ENST00000243878 1579 ntAPPRIS P1 TSL 1 (best) BASIC30.19■■■□□ 2.42
SMCHD1A6NHR9 DUX4L11-201ENST00000611504 1267 ntBASIC30.19■■■□□ 2.42
SMCHD1A6NHR9 DUX4L12-201ENST00000614593 1267 ntBASIC30.19■■■□□ 2.42
SMCHD1A6NHR9 DUX4L14-201ENST00000621227 1267 ntBASIC30.19■■■□□ 2.42
SMCHD1A6NHR9 QDPR-201ENST00000281243 1648 ntAPPRIS P1 TSL 1 (best) BASIC30.18■■■□□ 2.42
SMCHD1A6NHR9 P2RX2-203ENST00000350048 1344 ntTSL 1 (best) BASIC30.18■■■□□ 2.42
SMCHD1A6NHR9 NRG3-203ENST00000404547 2163 ntAPPRIS ALT2 TSL 1 (best) BASIC30.17■■■□□ 2.42
SMCHD1A6NHR9 HNRNPAB-204ENST00000504898 1785 ntAPPRIS P4 TSL 1 (best) BASIC30.17■■■□□ 2.42
SMCHD1A6NHR9 DTNBP1-212ENST00000622898 1305 ntTSL 1 (best) BASIC30.17■■■□□ 2.42
SMCHD1A6NHR9 U2AF1-201ENST00000291552 962 ntAPPRIS P3 TSL 1 (best) BASIC30.16■■■□□ 2.42
SMCHD1A6NHR9 CLDND1-226ENST00000513287 999 ntAPPRIS P1 TSL 2 BASIC30.16■■■□□ 2.42
SMCHD1A6NHR9 U2AF1L5-202ENST00000619610 813 ntAPPRIS ALT2 TSL 1 (best) BASIC30.16■■■□□ 2.42
SMCHD1A6NHR9 EBAG9-202ENST00000395785 1467 ntAPPRIS P1 TSL 1 (best) BASIC30.16■■■□□ 2.42
SMCHD1A6NHR9 RRAD-202ENST00000420652 1476 ntAPPRIS P1 TSL 1 (best) BASIC30.16■■■□□ 2.42
SMCHD1A6NHR9 TCAM1P-201ENST00000463377 452 ntTSL 3 BASIC30.15■■■□□ 2.42
SMCHD1A6NHR9 LINC01971-201ENST00000617888 1048 ntBASIC30.15■■■□□ 2.42
SMCHD1A6NHR9 POU3F1-201ENST00000373012 2184 ntAPPRIS P1 BASIC30.15■■■□□ 2.42
SMCHD1A6NHR9 LRRC61-202ENST00000359623 1877 ntAPPRIS P1 TSL 2 BASIC30.15■■■□□ 2.42
SMCHD1A6NHR9 HSD17B1P1-201ENST00000590052 955 ntBASIC30.14■■■□□ 2.42
SMCHD1A6NHR9 EI24-212ENST00000615917 1407 ntTSL 2 BASIC30.14■■■□□ 2.42
SMCHD1A6NHR9 SMDT1-201ENST00000331479 1567 ntAPPRIS P1 TSL 1 (best) BASIC30.14■■■□□ 2.42
SMCHD1A6NHR9 AL135925.1-201ENST00000605920 1701 ntBASIC30.14■■■□□ 2.42
SMCHD1A6NHR9 TOMM40-201ENST00000252487 1707 ntAPPRIS P2 TSL 1 (best) BASIC30.13■■■□□ 2.41
SMCHD1A6NHR9 TOMM40-202ENST00000405636 1709 ntAPPRIS P2 TSL 1 (best) BASIC30.13■■■□□ 2.41
SMCHD1A6NHR9 HOXD8-201ENST00000313173 1917 ntAPPRIS P3 TSL 2 BASIC30.13■■■□□ 2.41
SMCHD1A6NHR9 MBOAT7-202ENST00000338624 2076 ntTSL 2 BASIC30.12■■■□□ 2.41
SMCHD1A6NHR9 LINC00273-201ENST00000539813 1452 ntBASIC30.12■■■□□ 2.41
SMCHD1A6NHR9 SH3GL3-202ENST00000427482 1806 ntAPPRIS P1 TSL 1 (best) BASIC30.12■■■□□ 2.41
SMCHD1A6NHR9 AC004837.3-201ENST00000420748 565 ntTSL 4 BASIC30.12■■■□□ 2.41
SMCHD1A6NHR9 TPRA1-201ENST00000296210 1725 ntTSL 1 (best) BASIC30.11■■■□□ 2.41
Retrieved 100 of 98,524 protein–RNA pairs in 69.3 ms