Protein–RNA interactions for Protein: A0A0B4J1J9

Trav11, T cell receptor alpha variable 11 (Fragment), mousemouse

Predictions only

Length 114 aa.

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Protein RNA Prediction (catRAPID) Interaction (Experimental data)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
Trav11A0A0B4J1J9 Bok-201ENSMUST00000027499 1468 ntAPPRIS P1 TSL 1 (best) BASIC16.57■□□□□ 0.24
Trav11A0A0B4J1J9 Ranbp1-202ENSMUST00000115645 1085 ntAPPRIS P1 TSL 1 (best) BASIC16.57■□□□□ 0.24
Trav11A0A0B4J1J9 Dapk3-201ENSMUST00000047665 1676 ntAPPRIS P1 TSL 5 BASIC16.56■□□□□ 0.24
Trav11A0A0B4J1J9 Fam220a-205ENSMUST00000169329 2331 ntAPPRIS P1 TSL 1 (best) BASIC16.56■□□□□ 0.24
Trav11A0A0B4J1J9 Eif4ebp1-201ENSMUST00000033880 1997 ntAPPRIS P1 TSL 1 (best) BASIC16.56■□□□□ 0.24
Trav11A0A0B4J1J9 Peg12-201ENSMUST00000094339 2640 ntAPPRIS P1 BASIC16.55■□□□□ 0.24
Trav11A0A0B4J1J9 Ppp1cc-201ENSMUST00000086294 1442 ntTSL 1 (best) BASIC16.54■□□□□ 0.24
Trav11A0A0B4J1J9 Tm6sf1-201ENSMUST00000041890 2226 ntAPPRIS P1 TSL 1 (best) BASIC16.54■□□□□ 0.24
Trav11A0A0B4J1J9 Rbms1-202ENSMUST00000112509 1806 ntTSL 1 (best) BASIC16.54■□□□□ 0.24
Trav11A0A0B4J1J9 Fam220a-206ENSMUST00000196487 2278 ntAPPRIS P1 TSL 1 (best) BASIC16.53■□□□□ 0.24
Trav11A0A0B4J1J9 Peli2-204ENSMUST00000226513 1320 ntBASIC16.53■□□□□ 0.24
Trav11A0A0B4J1J9 Ctbp1-211ENSMUST00000202868 2436 ntAPPRIS ALT1 TSL 1 (best) BASIC16.53■□□□□ 0.24
Trav11A0A0B4J1J9 Cdc42bpb-201ENSMUST00000041965 6714 ntAPPRIS P1 TSL 1 (best) BASIC16.53■□□□□ 0.24
Trav11A0A0B4J1J9 Mnx1-201ENSMUST00000001608 2018 ntAPPRIS ALT2 TSL 5 BASIC16.53■□□□□ 0.24
Trav11A0A0B4J1J9 Rheb-201ENSMUST00000030787 1784 ntAPPRIS P1 TSL 1 (best) BASIC16.52■□□□□ 0.24
Trav11A0A0B4J1J9 Arx-202ENSMUST00000113947 2454 ntAPPRIS P1 TSL 1 (best) BASIC16.52■□□□□ 0.24
Trav11A0A0B4J1J9 Bok-205ENSMUST00000201863 883 ntAPPRIS P1 TSL 5 BASIC16.52■□□□□ 0.24
Trav11A0A0B4J1J9 BC030336-205ENSMUST00000208454 813 ntTSL 2 BASIC16.52■□□□□ 0.24
Trav11A0A0B4J1J9 Qk-202ENSMUST00000097414 4658 ntAPPRIS P1 TSL 1 (best) BASIC16.52■□□□□ 0.23
Trav11A0A0B4J1J9 Det1-201ENSMUST00000032839 2269 ntAPPRIS P1 TSL 1 (best) BASIC16.52■□□□□ 0.23
Trav11A0A0B4J1J9 Smad2-202ENSMUST00000091831 1645 ntAPPRIS ALT1 TSL 5 BASIC16.52■□□□□ 0.23
Trav11A0A0B4J1J9 Slc39a13-201ENSMUST00000073575 2469 ntAPPRIS P1 TSL 1 (best) BASIC16.52■□□□□ 0.23
Trav11A0A0B4J1J9 Agap3-201ENSMUST00000024123 3207 ntAPPRIS P1 TSL 1 (best) BASIC16.51■□□□□ 0.23
Trav11A0A0B4J1J9 Kansl2-202ENSMUST00000116400 2110 ntAPPRIS P2 TSL 1 (best) BASIC16.51■□□□□ 0.23
Trav11A0A0B4J1J9 Ube2f-202ENSMUST00000171112 1547 ntAPPRIS P1 TSL 1 (best) BASIC16.5■□□□□ 0.23
Trav11A0A0B4J1J9 Gpr12-201ENSMUST00000036211 2219 ntAPPRIS P1 TSL 1 (best) BASIC16.49■□□□□ 0.23
Trav11A0A0B4J1J9 Pou4f1-201ENSMUST00000053016 4445 ntAPPRIS P1 TSL 1 (best) BASIC16.49■□□□□ 0.23
Trav11A0A0B4J1J9 Trim33-201ENSMUST00000029444 8875 ntAPPRIS P4 TSL 1 (best) BASIC16.49■□□□□ 0.23
Trav11A0A0B4J1J9 Rmnd5a-201ENSMUST00000002292 6165 ntAPPRIS P1 TSL 1 (best) BASIC16.48■□□□□ 0.23
Trav11A0A0B4J1J9 Phf2-201ENSMUST00000035540 5494 ntAPPRIS P1 TSL 1 (best) BASIC16.48■□□□□ 0.23
Trav11A0A0B4J1J9 Odc1-201ENSMUST00000171737 2208 ntAPPRIS P1 TSL 1 (best) BASIC16.48■□□□□ 0.23
Trav11A0A0B4J1J9 Zbtb12-201ENSMUST00000052778 1858 ntAPPRIS P1 TSL 1 (best) BASIC16.48■□□□□ 0.23
Trav11A0A0B4J1J9 Pitpna-205ENSMUST00000179445 1665 ntAPPRIS ALT1 TSL 5 BASIC16.47■□□□□ 0.23
Trav11A0A0B4J1J9 Scrt2-201ENSMUST00000064061 3395 ntAPPRIS P1 TSL 5 BASIC16.47■□□□□ 0.23
Trav11A0A0B4J1J9 Kcnq5-201ENSMUST00000029667 6562 ntAPPRIS P3 TSL 1 (best) BASIC16.47■□□□□ 0.23
Trav11A0A0B4J1J9 E2f5-201ENSMUST00000029069 1779 ntAPPRIS P2 TSL 1 (best) BASIC16.46■□□□□ 0.23
Trav11A0A0B4J1J9 E330040D14Rik-201ENSMUST00000192299 1374 ntBASIC16.46■□□□□ 0.23
Trav11A0A0B4J1J9 Ccdc177-201ENSMUST00000073251 5775 ntAPPRIS P1 TSL 1 (best) BASIC16.46■□□□□ 0.23
Trav11A0A0B4J1J9 Gm26566-201ENSMUST00000181601 1038 ntAPPRIS P1 BASIC16.45■□□□□ 0.22
Trav11A0A0B4J1J9 Nhlrc1-201ENSMUST00000052747 2294 ntAPPRIS P1 BASIC16.45■□□□□ 0.22
Trav11A0A0B4J1J9 Lrrc4b-201ENSMUST00000058667 2728 ntAPPRIS P1 TSL 1 (best) BASIC16.45■□□□□ 0.22
Trav11A0A0B4J1J9 Atp5a1-202ENSMUST00000114748 2674 ntTSL 1 (best) BASIC16.44■□□□□ 0.22
Trav11A0A0B4J1J9 Gas2l1-201ENSMUST00000037146 2686 ntAPPRIS ALT2 TSL 1 (best) BASIC16.44■□□□□ 0.22
Trav11A0A0B4J1J9 Popdc3-201ENSMUST00000019994 1853 ntAPPRIS P1 TSL 1 (best) BASIC16.44■□□□□ 0.22
Trav11A0A0B4J1J9 Tcf15-201ENSMUST00000089112 980 ntAPPRIS P1 TSL 1 (best) BASIC16.43■□□□□ 0.22
Trav11A0A0B4J1J9 Otud5-205ENSMUST00000115668 2543 ntTSL 1 (best) BASIC16.43■□□□□ 0.22
Trav11A0A0B4J1J9 Wdr34-201ENSMUST00000113711 1814 ntAPPRIS P1 TSL 1 (best) BASIC16.42■□□□□ 0.22
Trav11A0A0B4J1J9 Fus-201ENSMUST00000077609 1831 ntAPPRIS ALT2 TSL 1 (best) BASIC16.42■□□□□ 0.22
Trav11A0A0B4J1J9 Rtn4r-201ENSMUST00000059589 1938 ntAPPRIS P1 TSL 1 (best) BASIC16.41■□□□□ 0.22
Trav11A0A0B4J1J9 Dyrk2-201ENSMUST00000004281 6129 ntAPPRIS P1 TSL 1 (best) BASIC16.41■□□□□ 0.22
Trav11A0A0B4J1J9 Gm5601-202ENSMUST00000207161 1437 ntTSL 1 (best) BASIC16.41■□□□□ 0.22
Trav11A0A0B4J1J9 Nans-201ENSMUST00000030018 2179 ntAPPRIS P1 TSL 1 (best) BASIC16.4■□□□□ 0.22
Trav11A0A0B4J1J9 Mat2b-201ENSMUST00000040167 1949 ntAPPRIS P1 TSL 1 (best) BASIC16.4■□□□□ 0.22
Trav11A0A0B4J1J9 Mpp6-209ENSMUST00000204545 2418 ntAPPRIS P1 TSL 5 BASIC16.4■□□□□ 0.22
Trav11A0A0B4J1J9 Neurl4-201ENSMUST00000061837 5188 ntAPPRIS P3 TSL 5 BASIC16.4■□□□□ 0.22
Trav11A0A0B4J1J9 Kcnq5-206ENSMUST00000173404 2775 ntAPPRIS ALT2 TSL 5 BASIC16.4■□□□□ 0.22
Trav11A0A0B4J1J9 Trp53rkb-202ENSMUST00000065753 1375 ntTSL 1 (best) BASIC16.39■□□□□ 0.21
Trav11A0A0B4J1J9 Ica1-201ENSMUST00000038403 2075 ntAPPRIS P2 TSL 1 (best) BASIC16.39■□□□□ 0.21
Trav11A0A0B4J1J9 Lpcat4-201ENSMUST00000028554 2275 ntAPPRIS P1 TSL 1 (best) BASIC16.39■□□□□ 0.21
Trav11A0A0B4J1J9 Vdac3-202ENSMUST00000179233 1423 ntAPPRIS ALT1 TSL 1 (best) BASIC16.39■□□□□ 0.21
Trav11A0A0B4J1J9 St7-208ENSMUST00000115419 2194 ntTSL 1 (best) BASIC16.39■□□□□ 0.21
Trav11A0A0B4J1J9 Tmem260-208ENSMUST00000226400 2281 ntAPPRIS ALT2 BASIC16.39■□□□□ 0.21
Trav11A0A0B4J1J9 Smarcc1-201ENSMUST00000088716 5717 ntAPPRIS P2 TSL 1 (best) BASIC16.38■□□□□ 0.21
Trav11A0A0B4J1J9 Lrfn1-203ENSMUST00000189877 1852 ntAPPRIS P3 TSL 5 BASIC16.38■□□□□ 0.21
Trav11A0A0B4J1J9 Zcchc11-201ENSMUST00000043368 6054 ntAPPRIS P2 TSL 5 BASIC16.38■□□□□ 0.21
Trav11A0A0B4J1J9 Ei24-202ENSMUST00000163192 2309 ntAPPRIS P1 TSL 1 (best) BASIC16.37■□□□□ 0.21
Trav11A0A0B4J1J9 Rnf115-201ENSMUST00000029740 2209 ntAPPRIS P1 TSL 1 (best) BASIC16.37■□□□□ 0.21
Trav11A0A0B4J1J9 Homer3-202ENSMUST00000087467 880 ntTSL 1 (best) BASIC16.37■□□□□ 0.21
Trav11A0A0B4J1J9 Paqr3-202ENSMUST00000112968 1875 ntTSL 1 (best) BASIC16.37■□□□□ 0.21
Trav11A0A0B4J1J9 Tbc1d24-201ENSMUST00000024931 4894 ntAPPRIS P1 TSL 1 (best) BASIC16.36■□□□□ 0.21
Trav11A0A0B4J1J9 Tcte2-204ENSMUST00000130033 1462 ntAPPRIS ALT2 TSL 1 (best) BASIC16.36■□□□□ 0.21
Trav11A0A0B4J1J9 Cpe-201ENSMUST00000048967 2117 ntAPPRIS P1 TSL 1 (best) BASIC16.36■□□□□ 0.21
Trav11A0A0B4J1J9 Tnfsfm13-203ENSMUST00000180587 2235 ntAPPRIS P3 TSL 2 BASIC16.36■□□□□ 0.21
Trav11A0A0B4J1J9 Fxyd1-205ENSMUST00000205439 535 ntAPPRIS P1 TSL 5 BASIC16.35■□□□□ 0.21
Trav11A0A0B4J1J9 Sox3-201ENSMUST00000135107 2065 ntAPPRIS P1 BASIC16.34■□□□□ 0.21
Trav11A0A0B4J1J9 Triobp-206ENSMUST00000130663 1660 ntAPPRIS ALT2 TSL 5 BASIC16.34■□□□□ 0.21
Trav11A0A0B4J1J9 5031425E22Rik-201ENSMUST00000101522 2110 ntBASIC16.34■□□□□ 0.21
Trav11A0A0B4J1J9 Snta1-202ENSMUST00000109728 2131 ntAPPRIS P2 TSL 1 (best) BASIC16.34■□□□□ 0.21
Trav11A0A0B4J1J9 Snta1-201ENSMUST00000028991 2125 ntAPPRIS ALT2 TSL 1 (best) BASIC16.34■□□□□ 0.21
Trav11A0A0B4J1J9 Fkbp8-202ENSMUST00000119353 1720 ntAPPRIS ALT2 TSL 1 (best) BASIC16.33■□□□□ 0.2
Trav11A0A0B4J1J9 Cic-202ENSMUST00000163320 6096 ntTSL 1 (best) BASIC16.32■□□□□ 0.2
Trav11A0A0B4J1J9 Cic-201ENSMUST00000005578 6099 ntTSL 5 BASIC16.32■□□□□ 0.2
Trav11A0A0B4J1J9 Tor1a-201ENSMUST00000028200 1401 ntAPPRIS P1 TSL 1 (best) BASIC16.32■□□□□ 0.2
Trav11A0A0B4J1J9 Bcl7b-201ENSMUST00000031692 1758 ntAPPRIS P2 TSL 1 (best) BASIC16.32■□□□□ 0.2
Trav11A0A0B4J1J9 Mcat-201ENSMUST00000061882 1893 ntAPPRIS P1 TSL 1 (best) BASIC16.32■□□□□ 0.2
Trav11A0A0B4J1J9 Fzd9-201ENSMUST00000062572 2293 ntAPPRIS P1 BASIC16.32■□□□□ 0.2
Trav11A0A0B4J1J9 Pcgf5-210ENSMUST00000225411 1626 ntAPPRIS P5 BASIC16.31■□□□□ 0.2
Trav11A0A0B4J1J9 Tbcel-204ENSMUST00000128959 1535 ntAPPRIS P1 TSL 5 BASIC16.31■□□□□ 0.2
Trav11A0A0B4J1J9 Rab21-201ENSMUST00000020343 4602 ntAPPRIS P1 TSL 1 (best) BASIC16.31■□□□□ 0.2
Trav11A0A0B4J1J9 Tspan33-201ENSMUST00000046750 1994 ntAPPRIS P3 TSL 1 (best) BASIC16.31■□□□□ 0.2
Trav11A0A0B4J1J9 Slc35a3-202ENSMUST00000120120 1791 ntAPPRIS P1 TSL 1 (best) BASIC16.31■□□□□ 0.2
Trav11A0A0B4J1J9 Fam120aos-201ENSMUST00000180775 1780 ntTSL 1 (best) BASIC16.31■□□□□ 0.2
Trav11A0A0B4J1J9 Eya2-202ENSMUST00000088132 2447 ntAPPRIS P1 TSL 1 (best) BASIC16.3■□□□□ 0.2
Trav11A0A0B4J1J9 Csnk1g2-201ENSMUST00000079773 2348 ntTSL 1 (best) BASIC16.3■□□□□ 0.2
Trav11A0A0B4J1J9 Lmo2-202ENSMUST00000111140 1706 ntTSL 1 (best) BASIC16.3■□□□□ 0.2
Trav11A0A0B4J1J9 Six3-201ENSMUST00000162695 2838 ntAPPRIS ALT2 TSL 5 BASIC16.3■□□□□ 0.2
Trav11A0A0B4J1J9 Frat2-201ENSMUST00000059231 2161 ntAPPRIS P1 BASIC16.3■□□□□ 0.2
Trav11A0A0B4J1J9 6530409C15Rik-202ENSMUST00000143551 1573 ntTSL 1 (best) BASIC16.3■□□□□ 0.2
Trav11A0A0B4J1J9 Slc16a8-201ENSMUST00000039752 1806 ntAPPRIS P1 TSL 1 (best) BASIC16.29■□□□□ 0.2
Trav11A0A0B4J1J9 Pradc1-202ENSMUST00000113770 610 ntTSL 1 (best) BASIC16.29■□□□□ 0.2
Retrieved 100 of 76,532 protein–RNA pairs in 42.6 ms