Protein–RNA interactions for Protein: A0A075B6B4

Trav6-4, T cell receptor alpha variable 6-4 (Fragment), mousemouse

Predictions only

Length 115 aa.

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Protein RNA Prediction (catRAPID) Interaction (Experimental data)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
Trav6-4A0A075B6B4 Clk2-203ENSMUST00000121931 2112 ntAPPRIS ALT1 TSL 5 BASIC18.72■□□□□ 0.59
Trav6-4A0A075B6B4 Cdv3-205ENSMUST00000189896 1023 ntAPPRIS ALT2 TSL 1 (best) BASIC18.72■□□□□ 0.59
Trav6-4A0A075B6B4 Zswim5-201ENSMUST00000044823 5582 ntAPPRIS P1 TSL 1 (best) BASIC18.72■□□□□ 0.59
Trav6-4A0A075B6B4 Cldn10-203ENSMUST00000100314 2128 ntAPPRIS P1 TSL 1 (best) BASIC18.71■□□□□ 0.59
Trav6-4A0A075B6B4 Zmynd12-201ENSMUST00000094819 1464 ntAPPRIS P1 TSL 1 (best) BASIC18.71■□□□□ 0.59
Trav6-4A0A075B6B4 Arl2bp-201ENSMUST00000034228 2063 ntAPPRIS P1 TSL 1 (best) BASIC18.69■□□□□ 0.58
Trav6-4A0A075B6B4 Pm20d2-201ENSMUST00000098181 1445 ntAPPRIS P1 TSL 5 BASIC18.69■□□□□ 0.58
Trav6-4A0A075B6B4 Tnfsfm13-201ENSMUST00000108649 1049 ntAPPRIS ALT2 TSL 5 BASIC18.69■□□□□ 0.58
Trav6-4A0A075B6B4 Phf23-205ENSMUST00000135814 2214 ntTSL 1 (best) BASIC18.69■□□□□ 0.58
Trav6-4A0A075B6B4 Gm26508-201ENSMUST00000181285 1516 ntTSL 5 BASIC18.69■□□□□ 0.58
Trav6-4A0A075B6B4 Yrdc-201ENSMUST00000102628 1634 ntAPPRIS P1 TSL 1 (best) BASIC18.68■□□□□ 0.58
Trav6-4A0A075B6B4 Mpp6-203ENSMUST00000166318 2222 ntTSL 1 (best) BASIC18.68■□□□□ 0.58
Trav6-4A0A075B6B4 Rras2-201ENSMUST00000069449 2275 ntAPPRIS P1 TSL 1 (best) BASIC18.67■□□□□ 0.58
Trav6-4A0A075B6B4 Zfp131-206ENSMUST00000223813 2561 ntAPPRIS P3 BASIC18.67■□□□□ 0.58
Trav6-4A0A075B6B4 Smarcc2-205ENSMUST00000218228 603 ntTSL 5 BASIC18.67■□□□□ 0.58
Trav6-4A0A075B6B4 Tspan33-201ENSMUST00000046750 1994 ntAPPRIS P3 TSL 1 (best) BASIC18.67■□□□□ 0.58
Trav6-4A0A075B6B4 Tor1a-201ENSMUST00000028200 1401 ntAPPRIS P1 TSL 1 (best) BASIC18.66■□□□□ 0.58
Trav6-4A0A075B6B4 Gtf2a2-203ENSMUST00000119413 1034 ntAPPRIS P1 TSL 1 (best) BASIC18.66■□□□□ 0.58
Trav6-4A0A075B6B4 Gm20503-201ENSMUST00000174664 1294 ntAPPRIS P1 TSL 5 BASIC18.66■□□□□ 0.58
Trav6-4A0A075B6B4 4930577N17Rik-201ENSMUST00000139771 1625 ntBASIC18.66■□□□□ 0.58
Trav6-4A0A075B6B4 Mat2b-201ENSMUST00000040167 1949 ntAPPRIS P1 TSL 1 (best) BASIC18.66■□□□□ 0.58
Trav6-4A0A075B6B4 Dapk3-201ENSMUST00000047665 1676 ntAPPRIS P1 TSL 5 BASIC18.66■□□□□ 0.58
Trav6-4A0A075B6B4 Kansl2-202ENSMUST00000116400 2110 ntAPPRIS P2 TSL 1 (best) BASIC18.65■□□□□ 0.58
Trav6-4A0A075B6B4 Hsd17b11-201ENSMUST00000031251 1825 ntAPPRIS P1 TSL 1 (best) BASIC18.65■□□□□ 0.58
Trav6-4A0A075B6B4 Dut-202ENSMUST00000082122 1020 ntTSL 1 (best) BASIC18.65■□□□□ 0.58
Trav6-4A0A075B6B4 Fam120aos-201ENSMUST00000180775 1780 ntTSL 1 (best) BASIC18.65■□□□□ 0.58
Trav6-4A0A075B6B4 Yars2-201ENSMUST00000059955 1574 ntAPPRIS P1 TSL 1 (best) BASIC18.64■□□□□ 0.58
Trav6-4A0A075B6B4 Kcmf1-204ENSMUST00000204598 1743 ntTSL 1 (best) BASIC18.64■□□□□ 0.57
Trav6-4A0A075B6B4 Gng13-201ENSMUST00000115108 347 ntAPPRIS P1 TSL 1 (best) BASIC18.64■□□□□ 0.57
Trav6-4A0A075B6B4 Eif4ebp1-201ENSMUST00000033880 1997 ntAPPRIS P1 TSL 1 (best) BASIC18.63■□□□□ 0.57
Trav6-4A0A075B6B4 Dazap1-201ENSMUST00000092305 1994 ntAPPRIS ALT1 TSL 1 (best) BASIC18.63■□□□□ 0.57
Trav6-4A0A075B6B4 Slc35a3-202ENSMUST00000120120 1791 ntAPPRIS P1 TSL 1 (best) BASIC18.63■□□□□ 0.57
Trav6-4A0A075B6B4 E030037K01Rik-201ENSMUST00000180928 1756 ntBASIC18.63■□□□□ 0.57
Trav6-4A0A075B6B4 Caap1-201ENSMUST00000030313 2107 ntAPPRIS P1 TSL 1 (best) BASIC18.62■□□□□ 0.57
Trav6-4A0A075B6B4 Tmem189-201ENSMUST00000006587 2329 ntAPPRIS P1 TSL 1 (best) BASIC18.62■□□□□ 0.57
Trav6-4A0A075B6B4 Kdm2a-203ENSMUST00000116571 2413 ntTSL 1 (best) BASIC18.62■□□□□ 0.57
Trav6-4A0A075B6B4 Rtn4r-201ENSMUST00000059589 1938 ntAPPRIS P1 TSL 1 (best) BASIC18.61■□□□□ 0.57
Trav6-4A0A075B6B4 Syndig1l-204ENSMUST00000222422 1758 ntAPPRIS P1 TSL 1 (best) BASIC18.61■□□□□ 0.57
Trav6-4A0A075B6B4 Odc1-201ENSMUST00000171737 2208 ntAPPRIS P1 TSL 1 (best) BASIC18.61■□□□□ 0.57
Trav6-4A0A075B6B4 Terf2-201ENSMUST00000068388 1915 ntAPPRIS ALT2 TSL 1 (best) BASIC18.61■□□□□ 0.57
Trav6-4A0A075B6B4 Ssx2ip-202ENSMUST00000106149 2416 ntAPPRIS ALT2 TSL 1 (best) BASIC18.59■□□□□ 0.57
Trav6-4A0A075B6B4 Msi2-202ENSMUST00000107908 695 ntTSL 5 BASIC18.59■□□□□ 0.57
Trav6-4A0A075B6B4 Lsm4-204ENSMUST00000210071 575 ntTSL 5 BASIC18.59■□□□□ 0.57
Trav6-4A0A075B6B4 Amer2-203ENSMUST00000225247 2662 ntBASIC18.58■□□□□ 0.57
Trav6-4A0A075B6B4 P2rx2-205ENSMUST00000200037 1569 ntAPPRIS ALT2 TSL 1 (best) BASIC18.58■□□□□ 0.56
Trav6-4A0A075B6B4 Gsk3a-201ENSMUST00000071739 2260 ntAPPRIS P2 TSL 2 BASIC18.58■□□□□ 0.56
Trav6-4A0A075B6B4 A530058N18Rik-203ENSMUST00000135729 1405 ntTSL 1 (best) BASIC18.57■□□□□ 0.56
Trav6-4A0A075B6B4 Cacfd1-204ENSMUST00000114006 1648 ntAPPRIS P1 TSL 1 (best) BASIC18.56■□□□□ 0.56
Trav6-4A0A075B6B4 Rpl19-ps4-201ENSMUST00000167150 625 ntBASIC18.56■□□□□ 0.56
Trav6-4A0A075B6B4 Mpp6-202ENSMUST00000036236 2161 ntAPPRIS P1 TSL 1 (best) BASIC18.56■□□□□ 0.56
Trav6-4A0A075B6B4 Jag2-201ENSMUST00000075827 5106 ntAPPRIS P1 TSL 1 (best) BASIC18.56■□□□□ 0.56
Trav6-4A0A075B6B4 Fam3c-201ENSMUST00000081288 1487 ntTSL 1 (best) BASIC18.56■□□□□ 0.56
Trav6-4A0A075B6B4 Rab2a-201ENSMUST00000060232 2133 ntAPPRIS P1 TSL 1 (best) BASIC18.56■□□□□ 0.56
Trav6-4A0A075B6B4 Mogs-201ENSMUST00000032114 2780 ntAPPRIS P1 TSL 1 (best) BASIC18.56■□□□□ 0.56
Trav6-4A0A075B6B4 Stard10-203ENSMUST00000164479 1375 ntAPPRIS P1 TSL 1 (best) BASIC18.55■□□□□ 0.56
Trav6-4A0A075B6B4 Itpka-201ENSMUST00000028758 1818 ntAPPRIS P1 TSL 1 (best) BASIC18.55■□□□□ 0.56
Trav6-4A0A075B6B4 Pdss1-201ENSMUST00000053729 1642 ntAPPRIS P1 TSL 1 (best) BASIC18.55■□□□□ 0.56
Trav6-4A0A075B6B4 Gm960-202ENSMUST00000177696 2262 ntAPPRIS P2 TSL 5 BASIC18.54■□□□□ 0.56
Trav6-4A0A075B6B4 A330023F24Rik-201ENSMUST00000181226 955 ntTSL 1 (best) BASIC18.54■□□□□ 0.56
Trav6-4A0A075B6B4 Ppp1r14b-201ENSMUST00000070850 919 ntAPPRIS P1 TSL 1 (best) BASIC18.54■□□□□ 0.56
Trav6-4A0A075B6B4 Rpsa-204ENSMUST00000217317 1599 ntAPPRIS P1 TSL 1 (best) BASIC18.54■□□□□ 0.56
Trav6-4A0A075B6B4 Spg7-201ENSMUST00000108868 845 ntTSL 2 BASIC18.53■□□□□ 0.56
Trav6-4A0A075B6B4 Mypop-203ENSMUST00000131087 1951 ntAPPRIS P1 TSL 5 BASIC18.53■□□□□ 0.56
Trav6-4A0A075B6B4 E2f5-202ENSMUST00000165922 1751 ntAPPRIS ALT2 TSL 5 BASIC18.53■□□□□ 0.56
Trav6-4A0A075B6B4 Irx4-201ENSMUST00000022095 2589 ntAPPRIS P1 TSL 1 (best) BASIC18.52■□□□□ 0.56
Trav6-4A0A075B6B4 Tsen34-203ENSMUST00000108629 1238 ntTSL 1 (best) BASIC18.52■□□□□ 0.56
Trav6-4A0A075B6B4 Stard3nl-201ENSMUST00000039694 1327 ntAPPRIS P1 TSL 1 (best) BASIC18.51■□□□□ 0.55
Trav6-4A0A075B6B4 AC150314.2-201ENSMUST00000214135 834 ntTSL 5 BASIC18.51■□□□□ 0.55
Trav6-4A0A075B6B4 Lmo2-202ENSMUST00000111140 1706 ntTSL 1 (best) BASIC18.51■□□□□ 0.55
Trav6-4A0A075B6B4 Nr2f6-201ENSMUST00000002466 2218 ntAPPRIS P1 TSL 1 (best) BASIC18.5■□□□□ 0.55
Trav6-4A0A075B6B4 Fam149b-202ENSMUST00000051915 1981 ntAPPRIS ALT2 TSL 5 BASIC18.5■□□□□ 0.55
Trav6-4A0A075B6B4 Osbpl1a-209ENSMUST00000122175 1203 ntTSL 1 (best) BASIC18.49■□□□□ 0.55
Trav6-4A0A075B6B4 Tcte3-201ENSMUST00000040746 788 ntAPPRIS P1 TSL 1 (best) BASIC18.49■□□□□ 0.55
Trav6-4A0A075B6B4 Tcte3-202ENSMUST00000097398 632 ntTSL 1 (best) BASIC18.49■□□□□ 0.55
Trav6-4A0A075B6B4 Gsk3a-202ENSMUST00000108411 2248 ntAPPRIS ALT2 TSL 5 BASIC18.49■□□□□ 0.55
Trav6-4A0A075B6B4 Bckdhb-206ENSMUST00000190637 1477 ntAPPRIS ALT2 TSL 1 (best) BASIC18.48■□□□□ 0.55
Trav6-4A0A075B6B4 4932443I19Rik-201ENSMUST00000166277 799 ntAPPRIS P2 TSL 1 (best) BASIC18.48■□□□□ 0.55
Trav6-4A0A075B6B4 Gpr137c-205ENSMUST00000227009 771 ntAPPRIS ALT2 BASIC18.48■□□□□ 0.55
Trav6-4A0A075B6B4 Sys1-201ENSMUST00000072452 1606 ntAPPRIS P1 TSL 1 (best) BASIC18.48■□□□□ 0.55
Trav6-4A0A075B6B4 Hdgf-201ENSMUST00000005017 2245 ntAPPRIS P1 TSL 1 (best) BASIC18.47■□□□□ 0.55
Trav6-4A0A075B6B4 Gna13-202ENSMUST00000106702 914 ntTSL 1 (best) BASIC18.47■□□□□ 0.55
Trav6-4A0A075B6B4 Uba52-205ENSMUST00000129909 705 ntAPPRIS P1 TSL 2 BASIC18.47■□□□□ 0.55
Trav6-4A0A075B6B4 Grb2-202ENSMUST00000106495 2041 ntTSL 5 BASIC18.47■□□□□ 0.55
Trav6-4A0A075B6B4 Bckdhb-201ENSMUST00000034801 1472 ntAPPRIS P3 TSL 1 (best) BASIC18.46■□□□□ 0.54
Trav6-4A0A075B6B4 Cetn4-202ENSMUST00000075537 762 ntTSL 3 BASIC18.45■□□□□ 0.54
Trav6-4A0A075B6B4 Gas7-203ENSMUST00000108681 1595 ntAPPRIS ALT2 TSL 5 BASIC18.45■□□□□ 0.54
Trav6-4A0A075B6B4 Pcf11-205ENSMUST00000208255 1720 ntBASIC18.45■□□□□ 0.54
Trav6-4A0A075B6B4 Lrfn1-203ENSMUST00000189877 1852 ntAPPRIS P3 TSL 5 BASIC18.45■□□□□ 0.54
Trav6-4A0A075B6B4 St7-202ENSMUST00000052113 2046 ntAPPRIS P1 TSL 1 (best) BASIC18.44■□□□□ 0.54
Trav6-4A0A075B6B4 2810459M11Rik-201ENSMUST00000027429 1225 ntAPPRIS ALT2 TSL 1 (best) BASIC18.44■□□□□ 0.54
Trav6-4A0A075B6B4 Gm9887-201ENSMUST00000053451 624 ntAPPRIS P1 BASIC18.44■□□□□ 0.54
Trav6-4A0A075B6B4 Acvr2b-202ENSMUST00000165044 2093 ntTSL 2 BASIC18.44■□□□□ 0.54
Trav6-4A0A075B6B4 Klhl35-201ENSMUST00000037359 1954 ntAPPRIS P1 TSL 1 (best) BASIC18.44■□□□□ 0.54
Trav6-4A0A075B6B4 Fam168b-201ENSMUST00000047534 5030 ntAPPRIS P1 TSL 1 (best) BASIC18.43■□□□□ 0.54
Trav6-4A0A075B6B4 Dennd5a-202ENSMUST00000106722 4862 ntTSL 1 (best) BASIC18.43■□□□□ 0.54
Trav6-4A0A075B6B4 Gm12523-201ENSMUST00000148844 599 ntTSL 5 BASIC18.43■□□□□ 0.54
Trav6-4A0A075B6B4 Pradc1-201ENSMUST00000032080 1038 ntAPPRIS P1 TSL 1 (best) BASIC18.42■□□□□ 0.54
Trav6-4A0A075B6B4 Cops6-202ENSMUST00000110951 1098 ntAPPRIS ALT2 TSL 1 (best) BASIC18.41■□□□□ 0.54
Trav6-4A0A075B6B4 Scx-201ENSMUST00000043089 1136 ntAPPRIS P1 TSL 1 (best) BASIC18.41■□□□□ 0.54
Trav6-4A0A075B6B4 Amigo1-201ENSMUST00000050909 5030 ntAPPRIS P1 TSL 1 (best) BASIC18.4■□□□□ 0.54
Retrieved 100 of 76,532 protein–RNA pairs in 55.5 ms