Protein–RNA interactions for Protein: Q8CDD9

Lrif1, Ligand-dependent nuclear receptor-interacting factor 1, mousemouse

Predictions only

Length 755 aa.

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Protein RNA Prediction (catRAPID) Interaction (Experimental data)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
Lrif1Q8CDD9 Matk-205ENSMUST00000121205 1841 ntAPPRIS ALT2 TSL 1 (best) BASIC18.16■□□□□ 0.5
Lrif1Q8CDD9 Chd5-202ENSMUST00000030775 9486 ntAPPRIS P3 TSL 5 BASIC18.16■□□□□ 0.5
Lrif1Q8CDD9 Pea15a-202ENSMUST00000111247 2435 ntTSL 3 BASIC18.15■□□□□ 0.5
Lrif1Q8CDD9 Thumpd3-201ENSMUST00000032398 2163 ntAPPRIS P1 TSL 1 (best) BASIC18.15■□□□□ 0.5
Lrif1Q8CDD9 Khdc3-201ENSMUST00000034737 1681 ntAPPRIS P3 TSL 1 (best) BASIC18.15■□□□□ 0.5
Lrif1Q8CDD9 Itsn1-206ENSMUST00000113999 5393 ntTSL 5 BASIC18.15■□□□□ 0.5
Lrif1Q8CDD9 Pick1-201ENSMUST00000018295 1977 ntAPPRIS P1 TSL 1 (best) BASIC18.15■□□□□ 0.5
Lrif1Q8CDD9 Aire-203ENSMUST00000105396 1749 ntAPPRIS ALT2 TSL 1 (best) BASIC18.15■□□□□ 0.5
Lrif1Q8CDD9 Aire-214ENSMUST00000154374 1712 ntAPPRIS ALT2 TSL 1 (best) BASIC18.15■□□□□ 0.5
Lrif1Q8CDD9 Aire-215ENSMUST00000155021 1737 ntAPPRIS ALT2 TSL 1 (best) BASIC18.15■□□□□ 0.5
Lrif1Q8CDD9 Hoxd4-202ENSMUST00000111980 1494 ntAPPRIS P1 TSL 1 (best) BASIC18.15■□□□□ 0.5
Lrif1Q8CDD9 Dennd2a-201ENSMUST00000036877 4468 ntAPPRIS P1 TSL 1 (best) BASIC18.15■□□□□ 0.5
Lrif1Q8CDD9 Dtymk-202ENSMUST00000112890 1055 ntTSL 1 (best) BASIC18.15■□□□□ 0.5
Lrif1Q8CDD9 Phox2b-202ENSMUST00000174251 1177 ntTSL 1 (best) BASIC18.15■□□□□ 0.5
Lrif1Q8CDD9 Gm20621-202ENSMUST00000176618 1234 ntTSL 1 (best) BASIC18.15■□□□□ 0.5
Lrif1Q8CDD9 Wdr41-208ENSMUST00000222995 1112 ntTSL 5 BASIC18.15■□□□□ 0.5
Lrif1Q8CDD9 Gtsf1-201ENSMUST00000023129 819 ntAPPRIS P1 TSL 1 (best) BASIC18.15■□□□□ 0.5
Lrif1Q8CDD9 Lbx2-201ENSMUST00000041265 817 ntAPPRIS P1 TSL 1 (best) BASIC18.15■□□□□ 0.5
Lrif1Q8CDD9 Xxylt1-201ENSMUST00000055389 2987 ntAPPRIS P1 TSL 1 (best) BASIC18.15■□□□□ 0.5
Lrif1Q8CDD9 Ppm1b-202ENSMUST00000112304 3262 ntAPPRIS P3 TSL 1 (best) BASIC18.15■□□□□ 0.5
Lrif1Q8CDD9 Pycr2-201ENSMUST00000027802 1580 ntAPPRIS P1 TSL 1 (best) BASIC18.15■□□□□ 0.5
Lrif1Q8CDD9 C1ql3-201ENSMUST00000061545 2535 ntAPPRIS P1 TSL 1 (best) BASIC18.15■□□□□ 0.5
Lrif1Q8CDD9 Lin9-203ENSMUST00000192561 3160 ntAPPRIS P1 TSL 1 (best) BASIC18.15■□□□□ 0.5
Lrif1Q8CDD9 Mdfi-201ENSMUST00000035375 1371 ntAPPRIS P1 TSL 1 (best) BASIC18.15■□□□□ 0.5
Lrif1Q8CDD9 Acss2-201ENSMUST00000029135 2931 ntAPPRIS P1 TSL 1 (best) BASIC18.15■□□□□ 0.5
Lrif1Q8CDD9 Fam104a-201ENSMUST00000120194 2619 ntAPPRIS P1 TSL 1 (best) BASIC18.15■□□□□ 0.5
Lrif1Q8CDD9 Alkbh5-201ENSMUST00000044250 5730 ntAPPRIS P1 TSL 1 (best) BASIC18.15■□□□□ 0.5
Lrif1Q8CDD9 Mrpl10-201ENSMUST00000001485 1708 ntAPPRIS P1 TSL 1 (best) BASIC18.15■□□□□ 0.5
Lrif1Q8CDD9 Fgf4-201ENSMUST00000060336 3030 ntAPPRIS P1 TSL 1 (best) BASIC18.15■□□□□ 0.5
Lrif1Q8CDD9 Map3k10-202ENSMUST00000108341 3403 ntAPPRIS ALT2 TSL 5 BASIC18.14■□□□□ 0.5
Lrif1Q8CDD9 Plekhg3-207ENSMUST00000219063 4535 ntAPPRIS ALT2 TSL 5 BASIC18.14■□□□□ 0.49
Lrif1Q8CDD9 4930471E19Rik-201ENSMUST00000219022 1514 ntTSL 1 (best) BASIC18.14■□□□□ 0.49
Lrif1Q8CDD9 Inppl1-202ENSMUST00000165052 4730 ntAPPRIS P1 TSL 1 (best) BASIC18.14■□□□□ 0.49
Lrif1Q8CDD9 Tomm40-202ENSMUST00000093552 1577 ntAPPRIS P1 TSL 1 (best) BASIC18.14■□□□□ 0.49
Lrif1Q8CDD9 Pfn2-201ENSMUST00000066882 2342 ntAPPRIS P1 TSL 1 (best) BASIC18.14■□□□□ 0.49
Lrif1Q8CDD9 Gm37564-201ENSMUST00000195000 330 ntTSL 5 BASIC18.14■□□□□ 0.49
Lrif1Q8CDD9 Ero1l-201ENSMUST00000022378 4418 ntAPPRIS P1 TSL 1 (best) BASIC18.14■□□□□ 0.49
Lrif1Q8CDD9 Zfyve9-202ENSMUST00000106657 6459 ntAPPRIS P2 TSL 5 BASIC18.14■□□□□ 0.49
Lrif1Q8CDD9 Rnaseh2b-201ENSMUST00000022499 1494 ntAPPRIS P1 TSL 1 (best) BASIC18.14■□□□□ 0.49
Lrif1Q8CDD9 Taf6l-211ENSMUST00000177056 2006 ntTSL 5 BASIC18.13■□□□□ 0.49
Lrif1Q8CDD9 Rmnd1-201ENSMUST00000042251 3139 ntAPPRIS P1 TSL 1 (best) BASIC18.13■□□□□ 0.49
Lrif1Q8CDD9 E130218I03Rik-201ENSMUST00000122952 943 ntAPPRIS P1 TSL 1 (best) BASIC18.13■□□□□ 0.49
Lrif1Q8CDD9 Ppp4r1l-ps-204ENSMUST00000140992 367 ntTSL 3 BASIC18.13■□□□□ 0.49
Lrif1Q8CDD9 Gm44731-201ENSMUST00000203086 542 ntTSL 3 BASIC18.13■□□□□ 0.49
Lrif1Q8CDD9 Agfg2-202ENSMUST00000100544 2858 ntAPPRIS ALT2 TSL 1 (best) BASIC18.13■□□□□ 0.49
Lrif1Q8CDD9 Apbb1-209ENSMUST00000188368 1970 ntTSL 5 BASIC18.13■□□□□ 0.49
Lrif1Q8CDD9 Ptpdc1-204ENSMUST00000222028 3164 ntAPPRIS ALT2 TSL 1 (best) BASIC18.13■□□□□ 0.49
Lrif1Q8CDD9 Tmem222-201ENSMUST00000105907 1484 ntAPPRIS P1 TSL 1 (best) BASIC18.13■□□□□ 0.49
Lrif1Q8CDD9 Mroh5-201ENSMUST00000071419 2766 ntAPPRIS P2 TSL 1 (best) BASIC18.13■□□□□ 0.49
Lrif1Q8CDD9 Sncaip-205ENSMUST00000178011 3433 ntAPPRIS P3 TSL 1 (best) BASIC18.13■□□□□ 0.49
Lrif1Q8CDD9 Apbb1-214ENSMUST00000189378 2878 ntAPPRIS ALT1 TSL 1 (best) BASIC18.13■□□□□ 0.49
Lrif1Q8CDD9 Kmt2b-201ENSMUST00000006470 8469 ntAPPRIS ALT2 TSL 5 BASIC18.12■□□□□ 0.49
Lrif1Q8CDD9 Slc35f4-204ENSMUST00000138884 1810 ntTSL 1 (best) BASIC18.12■□□□□ 0.49
Lrif1Q8CDD9 Trim63-202ENSMUST00000105875 1886 ntAPPRIS P2 TSL 5 BASIC18.12■□□□□ 0.49
Lrif1Q8CDD9 Pacsin1-204ENSMUST00000114873 1857 ntAPPRIS P1 TSL 1 (best) BASIC18.12■□□□□ 0.49
Lrif1Q8CDD9 Zbtb24-201ENSMUST00000080771 2844 ntAPPRIS P1 TSL 1 (best) BASIC18.12■□□□□ 0.49
Lrif1Q8CDD9 B4gat1-201ENSMUST00000053705 2035 ntAPPRIS P1 TSL 1 (best) BASIC18.12■□□□□ 0.49
Lrif1Q8CDD9 Rpusd3-204ENSMUST00000129047 1045 ntAPPRIS ALT2 TSL 1 (best) BASIC18.12■□□□□ 0.49
Lrif1Q8CDD9 Gm43060-201ENSMUST00000200621 289 ntBASIC18.12■□□□□ 0.49
Lrif1Q8CDD9 Serbp1-216ENSMUST00000205106 1288 ntTSL 5 BASIC18.12■□□□□ 0.49
Lrif1Q8CDD9 Dusp15-201ENSMUST00000037715 715 ntTSL 1 (best) BASIC18.12■□□□□ 0.49
Lrif1Q8CDD9 Tigd3-201ENSMUST00000055911 2114 ntAPPRIS P1 TSL 1 (best) BASIC18.12■□□□□ 0.49
Lrif1Q8CDD9 Rpusd3-201ENSMUST00000060634 1224 ntTSL 1 (best) BASIC18.12■□□□□ 0.49
Lrif1Q8CDD9 Acbd6-202ENSMUST00000080138 993 ntTSL 1 (best) BASIC18.12■□□□□ 0.49
Lrif1Q8CDD9 Ddx41-204ENSMUST00000224765 2199 ntBASIC18.12■□□□□ 0.49
Lrif1Q8CDD9 Mgll-202ENSMUST00000113581 1308 ntTSL 5 BASIC18.12■□□□□ 0.49
Lrif1Q8CDD9 Akain1-201ENSMUST00000169935 2296 ntAPPRIS P1 TSL 1 (best) BASIC18.12■□□□□ 0.49
Lrif1Q8CDD9 Plekhg3-201ENSMUST00000075249 5138 ntAPPRIS P2 TSL 1 (best) BASIC18.12■□□□□ 0.49
Lrif1Q8CDD9 Tmem234-201ENSMUST00000102591 1437 ntAPPRIS P1 TSL 1 (best) BASIC18.12■□□□□ 0.49
Lrif1Q8CDD9 Tmem114-201ENSMUST00000023400 1406 ntAPPRIS P1 TSL 1 (best) BASIC18.12■□□□□ 0.49
Lrif1Q8CDD9 Nlgn2-202ENSMUST00000108634 5568 ntAPPRIS P1 TSL 1 (best) BASIC18.12■□□□□ 0.49
Lrif1Q8CDD9 Arhgap8-207ENSMUST00000172307 1544 ntAPPRIS P1 TSL 5 BASIC18.12■□□□□ 0.49
Lrif1Q8CDD9 Ttc9-202ENSMUST00000218362 4754 ntAPPRIS P1 TSL 1 (best) BASIC18.12■□□□□ 0.49
Lrif1Q8CDD9 Asphd1-203ENSMUST00000106340 1647 ntAPPRIS ALT2 TSL 1 (best) BASIC18.12■□□□□ 0.49
Lrif1Q8CDD9 Hps4-201ENSMUST00000035279 2836 ntAPPRIS P1 TSL 1 (best) BASIC18.12■□□□□ 0.49
Lrif1Q8CDD9 Aup1-201ENSMUST00000092618 1769 ntAPPRIS P1 TSL 1 (best) BASIC18.12■□□□□ 0.49
Lrif1Q8CDD9 Anapc16-204ENSMUST00000182898 1852 ntAPPRIS P1 TSL 1 (best) BASIC18.12■□□□□ 0.49
Lrif1Q8CDD9 Dbnl-203ENSMUST00000109845 2001 ntAPPRIS ALT2 TSL 1 (best) BASIC18.11■□□□□ 0.49
Lrif1Q8CDD9 Pdia6-201ENSMUST00000057288 2175 ntAPPRIS P1 TSL 1 (best) BASIC18.11■□□□□ 0.49
Lrif1Q8CDD9 4921536K21Rik-201ENSMUST00000020712 2590 ntAPPRIS P1 TSL 1 (best) BASIC18.11■□□□□ 0.49
Lrif1Q8CDD9 Misp-205ENSMUST00000219305 2569 ntAPPRIS P1 TSL 1 (best) BASIC18.11■□□□□ 0.49
Lrif1Q8CDD9 Lrp5-202ENSMUST00000176867 2759 ntTSL 1 (best) BASIC18.11■□□□□ 0.49
Lrif1Q8CDD9 Gm11650-201ENSMUST00000141271 1145 ntTSL 1 (best) BASIC18.11■□□□□ 0.49
Lrif1Q8CDD9 Smad6-203ENSMUST00000179458 273 ntBASIC18.11■□□□□ 0.49
Lrif1Q8CDD9 Rbp4-201ENSMUST00000025951 1243 ntTSL 1 (best) BASIC18.11■□□□□ 0.49
Lrif1Q8CDD9 Dtymk-201ENSMUST00000027503 1003 ntAPPRIS P1 TSL 1 (best) BASIC18.11■□□□□ 0.49
Lrif1Q8CDD9 Moap1-201ENSMUST00000173760 1312 ntAPPRIS P1 TSL 2 BASIC18.11■□□□□ 0.49
Lrif1Q8CDD9 Agmat-201ENSMUST00000038161 1407 ntAPPRIS P1 TSL 1 (best) BASIC18.11■□□□□ 0.49
Lrif1Q8CDD9 P2rx4-202ENSMUST00000081554 1887 ntTSL 1 (best) BASIC18.11■□□□□ 0.49
Lrif1Q8CDD9 Runx1-203ENSMUST00000168195 1985 ntAPPRIS ALT2 TSL 1 (best) BASIC18.11■□□□□ 0.49
Lrif1Q8CDD9 Polr2m-202ENSMUST00000163972 2138 ntTSL 1 (best) BASIC18.11■□□□□ 0.49
Lrif1Q8CDD9 Rbpms-213ENSMUST00000191473 2547 ntTSL 1 (best) BASIC18.11■□□□□ 0.49
Lrif1Q8CDD9 Osgin2-201ENSMUST00000037198 2658 ntAPPRIS P1 TSL 1 (best) BASIC18.11■□□□□ 0.49
Lrif1Q8CDD9 Ythdc1-203ENSMUST00000120498 3269 ntAPPRIS ALT2 TSL 5 BASIC18.11■□□□□ 0.49
Lrif1Q8CDD9 Nsmf-202ENSMUST00000074422 2824 ntTSL 1 (best) BASIC18.1■□□□□ 0.49
Lrif1Q8CDD9 Ndor1-202ENSMUST00000114349 2336 ntAPPRIS P1 TSL 1 (best) BASIC18.1■□□□□ 0.49
Lrif1Q8CDD9 Il4i1-202ENSMUST00000118125 2275 ntAPPRIS ALT2 TSL 2 BASIC18.1■□□□□ 0.49
Lrif1Q8CDD9 Atg16l2-202ENSMUST00000122116 2083 ntAPPRIS ALT2 TSL 1 (best) BASIC18.1■□□□□ 0.49
Lrif1Q8CDD9 Arid3c-204ENSMUST00000171251 1751 ntAPPRIS P3 TSL 5 BASIC18.1■□□□□ 0.49
Lrif1Q8CDD9 Krtap5-2-202ENSMUST00000190456 1471 ntAPPRIS P2 BASIC18.1■□□□□ 0.49
Retrieved 100 of 76,532 protein–RNA pairs in 157.6 ms