Protein–RNA interactions for Protein: P78363

ABCA4, Retinal-specific ATP-binding cassette transporter, humanhuman

Predictions only

Length 2,273 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
ABCA4P78363 AC114730.1-201ENST00000400768 472 ntTSL 4 BASIC18.07■□□□□ 0.48
ABCA4P78363 AC096537.1-201ENST00000437416 684 ntTSL 5 BASIC18.07■□□□□ 0.48
ABCA4P78363 TNFRSF1B-204ENST00000536782 557 ntTSL 1 (best) BASIC18.07■□□□□ 0.48
ABCA4P78363 YIF1B-213ENST00000591755 1077 ntTSL 2 BASIC18.07■□□□□ 0.48
ABCA4P78363 CD24-208ENST00000622315 825 ntAPPRIS ALT2 TSL 2 BASIC18.07■□□□□ 0.48
ABCA4P78363 SSX2IP-203ENST00000437941 5843 ntTSL 2 BASIC18.07■□□□□ 0.48
ABCA4P78363 LHX2-201ENST00000373615 2554 ntAPPRIS P1 TSL 1 (best) BASIC18.07■□□□□ 0.48
ABCA4P78363 CFAP99-206ENST00000616117 1941 ntAPPRIS P1 TSL 5 BASIC18.07■□□□□ 0.48
ABCA4P78363 GPRC5B-210ENST00000569847 1830 ntAPPRIS P2 TSL 2 BASIC18.07■□□□□ 0.48
ABCA4P78363 ECEL1P3-201ENST00000427961 737 ntBASIC18.06■□□□□ 0.48
ABCA4P78363 AC073111.3-201ENST00000478789 635 ntAPPRIS P1 TSL 3 BASIC18.06■□□□□ 0.48
ABCA4P78363 IGFBP6-203ENST00000548547 1177 ntAPPRIS ALT2 TSL 5 BASIC18.06■□□□□ 0.48
ABCA4P78363 CBFB-203ENST00000561924 584 ntTSL 5 BASIC18.06■□□□□ 0.48
ABCA4P78363 RABEP2-201ENST00000357573 2175 ntTSL 1 (best) BASIC18.06■□□□□ 0.48
ABCA4P78363 PTH1R-201ENST00000313049 2123 ntAPPRIS P1 TSL 1 (best) BASIC18.06■□□□□ 0.48
ABCA4P78363 PKM-204ENST00000449901 2526 ntTSL 2 BASIC18.06■□□□□ 0.48
ABCA4P78363 RAB11FIP1-203ENST00000522727 1866 ntTSL 1 (best) BASIC18.06■□□□□ 0.48
ABCA4P78363 POFUT1-201ENST00000375730 1507 ntTSL 1 (best) BASIC18.06■□□□□ 0.48
ABCA4P78363 TRPT1-201ENST00000317459 962 ntAPPRIS P3 TSL 1 (best) BASIC18.06■□□□□ 0.48
ABCA4P78363 PEX26-203ENST00000428061 815 ntTSL 1 (best) BASIC18.06■□□□□ 0.48
ABCA4P78363 NUDT22-204ENST00000441250 986 ntAPPRIS ALT2 TSL 5 BASIC18.06■□□□□ 0.48
ABCA4P78363 MNX1-AS1-201ENST00000480284 1041 ntTSL 1 (best) BASIC18.06■□□□□ 0.48
ABCA4P78363 RNF146-206ENST00000480444 843 ntTSL 2 BASIC18.06■□□□□ 0.48
ABCA4P78363 UBE2K-204ENST00000503368 891 ntTSL 1 (best) BASIC18.06■□□□□ 0.48
ABCA4P78363 ABCC3-217ENST00000515707 656 ntTSL 3 BASIC18.06■□□□□ 0.48
ABCA4P78363 BET1L-207ENST00000529614 560 ntTSL 5 BASIC18.06■□□□□ 0.48
ABCA4P78363 RBPMS2-201ENST00000300069 2008 ntAPPRIS P1 TSL 1 (best) BASIC18.06■□□□□ 0.48
ABCA4P78363 MFSD6L-201ENST00000329805 2188 ntAPPRIS P1 BASIC18.06■□□□□ 0.48
ABCA4P78363 RALB-201ENST00000272519 2344 ntAPPRIS P1 TSL 1 (best) BASIC18.06■□□□□ 0.48
ABCA4P78363 ZNF76-203ENST00000373953 2716 ntAPPRIS P1 TSL 1 (best) BASIC18.05■□□□□ 0.48
ABCA4P78363 GATS-205ENST00000436886 2726 ntAPPRIS P1 TSL 1 (best) BASIC18.05■□□□□ 0.48
ABCA4P78363 DPH7-201ENST00000277540 1847 ntAPPRIS P1 TSL 1 (best) BASIC18.05■□□□□ 0.48
ABCA4P78363 PWWP2A-205ENST00000523662 1819 ntTSL 1 (best) BASIC18.05■□□□□ 0.48
ABCA4P78363 LINC02175-201ENST00000571219 1875 ntTSL 1 (best) BASIC18.05■□□□□ 0.48
ABCA4P78363 WDR88-201ENST00000355868 1718 ntAPPRIS P2 TSL 2 BASIC18.05■□□□□ 0.48
ABCA4P78363 AC061975.6-201ENST00000579045 1553 ntBASIC18.05■□□□□ 0.48
ABCA4P78363 CALML5-201ENST00000380332 859 ntAPPRIS P1 BASIC18.05■□□□□ 0.48
ABCA4P78363 ATPIF1-203ENST00000468425 539 ntTSL 2 BASIC18.05■□□□□ 0.48
ABCA4P78363 BMP6-201ENST00000283147 2780 ntAPPRIS P1 TSL 1 (best) BASIC18.05■□□□□ 0.48
ABCA4P78363 MBOAT7-205ENST00000431666 2471 ntTSL 1 (best) BASIC18.05■□□□□ 0.48
ABCA4P78363 MME-217ENST00000616757 1315 ntTSL 5 BASIC18.05■□□□□ 0.48
ABCA4P78363 SNHG7-201ENST00000414282 2357 ntTSL 2 BASIC18.05■□□□□ 0.48
ABCA4P78363 HAUS4-201ENST00000206474 1642 ntAPPRIS P1 TSL 1 (best) BASIC18.05■□□□□ 0.48
ABCA4P78363 OTUB1-211ENST00000543004 1647 ntTSL 5 BASIC18.05■□□□□ 0.48
ABCA4P78363 SYNGR1-201ENST00000216155 497 ntTSL 3 BASIC18.05■□□□□ 0.48
ABCA4P78363 CBY3-201ENST00000376974 785 ntAPPRIS P1 TSL 2 BASIC18.05■□□□□ 0.48
ABCA4P78363 ANKRD39-201ENST00000393537 976 ntAPPRIS P1 TSL 1 (best) BASIC18.05■□□□□ 0.48
ABCA4P78363 NT5C3B-203ENST00000435506 975 ntAPPRIS P1 TSL 5 BASIC18.05■□□□□ 0.48
ABCA4P78363 TPT1-AS1-210ENST00000520590 873 ntTSL 5 BASIC18.05■□□□□ 0.48
ABCA4P78363 FGF8-207ENST00000618991 856 ntTSL 3 BASIC18.05■□□□□ 0.48
ABCA4P78363 NUF2-208ENST00000524800 1845 ntTSL 5 BASIC18.05■□□□□ 0.48
ABCA4P78363 R3HCC1-210ENST00000625275 1489 ntAPPRIS ALT2 TSL 1 (best) BASIC18.05■□□□□ 0.48
ABCA4P78363 RAB11FIP3-201ENST00000262305 4831 ntAPPRIS P2 TSL 1 (best) BASIC18.04■□□□□ 0.48
ABCA4P78363 IRX4-207ENST00000613726 2403 ntTSL 1 (best) BASIC18.04■□□□□ 0.48
ABCA4P78363 HLA-G-204ENST00000376828 1490 ntAPPRIS ALT2 BASIC18.04■□□□□ 0.48
ABCA4P78363 HCFC1R1-202ENST00000354679 765 ntTSL 2 BASIC18.04■□□□□ 0.48
ABCA4P78363 NMRK1-201ENST00000361092 1185 ntAPPRIS P1 TSL 1 (best) BASIC18.04■□□□□ 0.48
ABCA4P78363 NENF-201ENST00000366988 949 ntAPPRIS P1 TSL 1 (best) BASIC18.04■□□□□ 0.48
ABCA4P78363 TNIK-208ENST00000465393 750 ntTSL 1 (best) BASIC18.04■□□□□ 0.48
ABCA4P78363 DEDD2-205ENST00000596251 1183 ntAPPRIS P3 TSL 1 (best) BASIC18.04■□□□□ 0.48
ABCA4P78363 ETS1-201ENST00000319397 2231 ntAPPRIS P1 TSL 1 (best) BASIC18.04■□□□□ 0.48
ABCA4P78363 HNRNPM-202ENST00000348943 2568 ntAPPRIS ALT2 TSL 1 (best) BASIC18.04■□□□□ 0.48
ABCA4P78363 CDK5-204ENST00000485972 1758 ntAPPRIS P1 TSL 1 (best) BASIC18.04■□□□□ 0.48
ABCA4P78363 IFI27L2-201ENST00000238609 511 ntAPPRIS P1 TSL 1 (best) BASIC18.03■□□□□ 0.48
ABCA4P78363 CAPN10-203ENST00000352879 862 ntTSL 1 (best) BASIC18.03■□□□□ 0.48
ABCA4P78363 GNAS-AS1-201ENST00000424094 1156 ntTSL 1 (best) BASIC18.03■□□□□ 0.48
ABCA4P78363 MGAT4D-208ENST00000515354 1806 ntTSL 3 BASIC18.03■□□□□ 0.48
ABCA4P78363 KRT17P1-201ENST00000399211 1546 ntBASIC18.03■□□□□ 0.48
ABCA4P78363 HLA-C-203ENST00000383329 1554 ntAPPRIS ALT2 BASIC18.03■□□□□ 0.48
ABCA4P78363 SYNGR2-203ENST00000588282 1553 ntTSL 1 (best) BASIC18.03■□□□□ 0.48
ABCA4P78363 UNC50-201ENST00000357765 1143 ntAPPRIS P1 TSL 1 (best) BASIC18.03■□□□□ 0.48
ABCA4P78363 AL360181.5-201ENST00000368554 1044 ntAPPRIS P1 TSL 2 BASIC18.03■□□□□ 0.48
ABCA4P78363 FFAR3-202ENST00000594310 1182 ntAPPRIS P1 BASIC18.03■□□□□ 0.48
ABCA4P78363 AC010542.4-201ENST00000563151 1910 ntBASIC18.03■□□□□ 0.48
ABCA4P78363 BIN1-210ENST00000393041 2272 ntTSL 1 (best) BASIC18.03■□□□□ 0.48
ABCA4P78363 RNF4-207ENST00000506706 2098 ntAPPRIS P1 TSL 1 (best) BASIC18.03■□□□□ 0.48
ABCA4P78363 TBC1D22A-206ENST00000407381 1949 ntTSL 5 BASIC18.03■□□□□ 0.48
ABCA4P78363 CCDC151-203ENST00000591179 1943 ntTSL 1 (best) BASIC18.03■□□□□ 0.48
ABCA4P78363 SPAG7-205ENST00000573366 1668 ntTSL 3 BASIC18.02■□□□□ 0.48
ABCA4P78363 NECTIN2-202ENST00000252485 2112 ntAPPRIS P3 TSL 1 (best) BASIC18.02■□□□□ 0.48
ABCA4P78363 ASIP-201ENST00000374954 586 ntAPPRIS P1 TSL 1 (best) BASIC18.02■□□□□ 0.48
ABCA4P78363 KRTAP5-8-201ENST00000398534 1183 ntAPPRIS P1 BASIC18.02■□□□□ 0.48
ABCA4P78363 WRNIP1-205ENST00000618555 2651 ntAPPRIS P1 TSL 1 (best) BASIC18.02■□□□□ 0.48
ABCA4P78363 MRPL40-201ENST00000333130 1387 ntAPPRIS P1 TSL 1 (best) BASIC18.02■□□□□ 0.48
ABCA4P78363 COG8-201ENST00000562081 1731 ntAPPRIS P1 TSL 5 BASIC18.02■□□□□ 0.48
ABCA4P78363 ASB6-201ENST00000277458 2330 ntAPPRIS P1 TSL 1 (best) BASIC18.02■□□□□ 0.48
ABCA4P78363 DMPK-220ENST00000618091 2503 ntTSL 1 (best) BASIC18.02■□□□□ 0.47
ABCA4P78363 C10orf76-201ENST00000311122 724 ntTSL 1 (best) BASIC18.02■□□□□ 0.47
ABCA4P78363 PBX1-209ENST00000485769 834 ntTSL 2 BASIC18.02■□□□□ 0.47
ABCA4P78363 LINC01962-201ENST00000513771 411 ntTSL 2 BASIC18.02■□□□□ 0.47
ABCA4P78363 EIF3J-AS1-205ENST00000560750 1093 ntTSL 3 BASIC18.02■□□□□ 0.47
ABCA4P78363 ZNF264-205ENST00000599653 705 ntTSL 2 BASIC18.02■□□□□ 0.47
ABCA4P78363 RNASET2-203ENST00000366855 1417 ntTSL 5 BASIC18.02■□□□□ 0.47
ABCA4P78363 RBM38-203ENST00000356208 2382 ntAPPRIS P1 TSL 1 (best) BASIC18.02■□□□□ 0.47
ABCA4P78363 HOXA10-206ENST00000613671 2175 ntTSL 5 BASIC18.01■□□□□ 0.47
ABCA4P78363 TMEM44-202ENST00000347147 2245 ntAPPRIS P1 TSL 1 (best) BASIC18.01■□□□□ 0.47
ABCA4P78363 POU4F1-201ENST00000377208 4547 ntAPPRIS P1 TSL 1 (best) BASIC18.01■□□□□ 0.47
ABCA4P78363 CLDN3-201ENST00000395145 1274 ntAPPRIS P1 BASIC18.01■□□□□ 0.47
ABCA4P78363 SERPINH1P1-201ENST00000419794 1249 ntBASIC18.01■□□□□ 0.47
ABCA4P78363 PLEKHB1-216ENST00000543085 632 ntTSL 3 BASIC18.01■□□□□ 0.47
Retrieved 100 of 98,524 protein–RNA pairs in 28.6 ms