Protein–RNA interactions for Protein: O60508

CDC40, Pre-mRNA-processing factor 17, humanhuman

Known RBP eCLIP

Length 579 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
CDC40O60508 IST1-208ENST00000535424 4082 ntTSL 5 BASIC7.98□□□□□ -1.139e-6■□□□□ 9.1
CDC40O60508 IST1-220ENST00000541918 908 ntTSL 57.71□□□□□ -1.189e-6■□□□□ 9.1
CDC40O60508 RPS17-209ENST00000561157 1909 ntTSL 2 BASIC7.39□□□□□ -1.239e-6■□□□□ 9.1
CDC40O60508 RPS17-206ENST00000560612 1877 ntTSL 27.18□□□□□ -1.269e-6■□□□□ 9.1
CDC40O60508 ARHGAP12-204ENST00000375250 4914 ntTSL 1 (best) BASIC6.8□□□□□ -1.329e-6■□□□□ 9.1
CDC40O60508 ADGRD1-212ENST00000542091 735 ntTSL 36.78□□□□□ -1.329e-6■□□□□ 9.1
CDC40O60508 HAL-205ENST00000546579 697 ntTSL 46.45□□□□□ -1.389e-6■□□□□ 9.1
CDC40O60508 IST1-210ENST00000537571 603 ntTSL 25.06□□□□□ -1.69e-6■□□□□ 9.1
CDC40O60508 RPS17-208ENST00000561068 522 ntTSL 34.34□□□□□ -1.719e-6■□□□□ 9.1
CDC40O60508 RPS17-207ENST00000560639 932 ntTSL 54.22□□□□□ -1.739e-6■□□□□ 9.1
CDC40O60508 RPS17-202ENST00000558397 583 ntTSL 34.2□□□□□ -1.749e-6■□□□□ 9.1
CDC40O60508 ARHGAP12-208ENST00000493008 2334 ntTSL 23.71□□□□□ -1.829e-6■□□□□ 9.1
CDC40O60508 ARHGAP12-201ENST00000311380 4625 ntTSL 1 (best) BASIC3.34□□□□□ -1.889e-6■□□□□ 9.1
CDC40O60508 ARHGAP12-207ENST00000492028 3227 ntTSL 1 (best)3.21□□□□□ -1.99e-6■□□□□ 9.1
CDC40O60508 HNRNPU-210ENST00000483966 1069 ntTSL 23.14□□□□□ -1.919e-6■□□□□ 9.1
CDC40O60508 MAP4-214ENST00000482752 386 ntTSL 31.63□□□□□ -2.159e-6■□□□□ 9.1
CDC40O60508 IST1-227ENST00000626438 126 ntTSL 5 BASIC0.71□□□□□ -2.39e-6■□□□□ 9.1
CDC40O60508 EIF4G1-232ENST00000466311 573 ntTSL 213.77□□□□□ -0.213e-8■□□□□ 9.1
CDC40O60508 EIF4G1-225ENST00000448284 677 ntTSL 512.39□□□□□ -0.433e-8■□□□□ 9.1
CDC40O60508 RAB17-208ENST00000430445 421 ntTSL 512.89□□□□□ -0.354e-10■□□□□ 9.1
CDC40O60508 AC124312.1-202ENST00000557230 669 ntAPPRIS ALT2 TSL 56.61□□□□□ -1.351e-8■□□□□ 9.1
CDC40O60508 AC124312.1-201ENST00000551312 1325 ntAPPRIS P5 TSL 5 BASIC5.89□□□□□ -1.471e-8■□□□□ 9.1
CDC40O60508 SNHG14-214ENST00000551361 550 ntTSL 32.43□□□□□ -2.021e-8■□□□□ 9.1
CDC40O60508 SNHG14-215ENST00000551631 4008 ntTSL 5 BASIC2.22□□□□□ -2.051e-8■□□□□ 9.1
CDC40O60508 BPIFB2-201ENST00000170150 1898 ntAPPRIS P1 TSL 1 (best) BASIC14.1□□□□□ -0.156e-21■□□□□ 9.1
CDC40O60508 NAP1L4-207ENST00000469805 2294 ntTSL 314.85□□□□□ -0.038e-9■□□□□ 9.1
CDC40O60508 NDRG2-242ENST00000555158 2216 ntAPPRIS ALT1 TSL 1 (best) BASIC18.42■□□□□ 0.542e-7■□□□□ 9
CDC40O60508 NDRG2-215ENST00000553503 2162 ntAPPRIS ALT1 TSL 1 (best) BASIC18.15■□□□□ 0.52e-7■□□□□ 9
CDC40O60508 NDRG2-227ENST00000554143 1980 ntAPPRIS ALT1 TSL 2 BASIC17.24■□□□□ 0.352e-7■□□□□ 9
CDC40O60508 ENSA-205ENST00000361532 792 ntTSL 2 BASIC17.06■□□□□ 0.322e-7■□□□□ 9
CDC40O60508 NDRG2-208ENST00000397851 2022 ntAPPRIS P4 TSL 2 BASIC16.46■□□□□ 0.232e-7■□□□□ 9
CDC40O60508 ENSA-206ENST00000361631 725 ntTSL 2 BASIC15.88■□□□□ 0.132e-7■□□□□ 9
CDC40O60508 NDRG2-204ENST00000360463 2047 ntAPPRIS ALT1 TSL 1 (best) BASIC15.56■□□□□ 0.082e-7■□□□□ 9
CDC40O60508 SFT2D1-202ENST00000478705 659 ntTSL 215.3■□□□□ 0.042e-7■□□□□ 9
CDC40O60508 NDRG2-244ENST00000555650 1588 ntTSL 215.09■□□□□ 0.012e-7■□□□□ 9
CDC40O60508 SFT2D1-201ENST00000361731 1079 ntAPPRIS P1 TSL 1 (best) BASIC14.87□□□□□ -0.032e-7■□□□□ 9
CDC40O60508 SNX5-204ENST00000431277 840 ntTSL 514.77□□□□□ -0.052e-7■□□□□ 9
CDC40O60508 NDRG2-211ENST00000397858 2054 ntAPPRIS P4 TSL 5 BASIC14.76□□□□□ -0.052e-7■□□□□ 9
CDC40O60508 NDRG2-271ENST00000557353 1919 ntTSL 214.55□□□□□ -0.082e-7■□□□□ 9
CDC40O60508 NDRG2-209ENST00000397853 2079 ntAPPRIS P4 TSL 2 BASIC14.51□□□□□ -0.092e-7■□□□□ 9
CDC40O60508 HMGB2-203ENST00000446922 1175 ntAPPRIS P1 TSL 1 (best) BASIC14.37□□□□□ -0.112e-12■□□□□ 9
CDC40O60508 NDRG2-206ENST00000397844 2096 ntTSL 1 (best) BASIC14.37□□□□□ -0.112e-7■□□□□ 9
CDC40O60508 NDRG2-207ENST00000397847 2084 ntTSL 1 (best) BASIC14.18□□□□□ -0.142e-7■□□□□ 9
CDC40O60508 NDRG2-202ENST00000298687 2122 ntAPPRIS P4 TSL 1 (best) BASIC14.14□□□□□ -0.152e-7■□□□□ 9
CDC40O60508 NDRG2-203ENST00000350792 2127 ntAPPRIS ALT1 TSL 1 (best) BASIC14.14□□□□□ -0.152e-7■□□□□ 9
CDC40O60508 SNX5-203ENST00000419004 778 ntTSL 513.82□□□□□ -0.22e-7■□□□□ 9
CDC40O60508 NDRG2-226ENST00000554104 2146 ntTSL 1 (best) BASIC13.75□□□□□ -0.212e-7■□□□□ 9
CDC40O60508 SAR1A-204ENST00000373241 2996 ntAPPRIS P1 TSL 1 (best) BASIC13.1□□□□□ -0.312e-7■□□□□ 9
CDC40O60508 SAR1A-203ENST00000373239 468 ntTSL 312.97□□□□□ -0.332e-7■□□□□ 9
CDC40O60508 NDRG2-251ENST00000556147 2880 ntAPPRIS P4 TSL 5 BASIC12.63□□□□□ -0.392e-7■□□□□ 9
CDC40O60508 NDRG2-201ENST00000298684 1784 ntTSL 1 (best) BASIC12.32□□□□□ -0.442e-7■□□□□ 9
CDC40O60508 NDRG2-258ENST00000556716 2718 ntTSL 212.17□□□□□ -0.462e-7■□□□□ 9
CDC40O60508 ENSA-208ENST00000369014 2085 ntAPPRIS P4 TSL 1 (best) BASIC12.11□□□□□ -0.472e-7■□□□□ 9
CDC40O60508 SFT2D1-204ENST00000487841 2576 ntTSL 1 (best)11.63□□□□□ -0.552e-7■□□□□ 9
CDC40O60508 HMGB2-205ENST00000511316 1841 ntTSL 211.61□□□□□ -0.552e-12■□□□□ 9
CDC40O60508 HMGB2-201ENST00000296503 1889 ntAPPRIS P1 TSL 1 (best) BASIC11.1□□□□□ -0.632e-12■□□□□ 9
CDC40O60508 NDRG2-274ENST00000557633 527 ntTSL 310.73□□□□□ -0.692e-7■□□□□ 9
CDC40O60508 SAR1A-205ENST00000373242 5981 ntAPPRIS P1 TSL 2 BASIC9.43□□□□□ -0.92e-7■□□□□ 9
CDC40O60508 DDX5-214ENST00000580026 1171 ntTSL 29.34□□□□□ -0.912e-7■□□□□ 9
CDC40O60508 DDX5-209ENST00000578758 667 ntTSL 29.11□□□□□ -0.952e-7■□□□□ 9
CDC40O60508 ENSA-209ENST00000369016 923 ntTSL 5 BASIC8.03□□□□□ -1.122e-7■□□□□ 9
CDC40O60508 SAR1A-202ENST00000373238 3227 ntAPPRIS P1 TSL 2 BASIC7.8□□□□□ -1.162e-7■□□□□ 9
CDC40O60508 HMGB2-202ENST00000438704 1032 ntAPPRIS P1 TSL 1 (best) BASIC6.96□□□□□ -1.32e-12■□□□□ 9
CDC40O60508 SNX5-211ENST00000483485 3087 ntTSL 26.77□□□□□ -1.332e-7■□□□□ 9
CDC40O60508 DDX5-216ENST00000581237 592 ntTSL 56.69□□□□□ -1.342e-7■□□□□ 9
CDC40O60508 SAR1A-206ENST00000431664 2810 ntAPPRIS P1 TSL 1 (best) BASIC6.67□□□□□ -1.342e-7■□□□□ 9
CDC40O60508 SAR1A-201ENST00000373236 437 ntTSL 1 (best) BASIC4.71□□□□□ -1.662e-7■□□□□ 9
CDC40O60508 SAR1A-208ENST00000477464 529 ntTSL 23.8□□□□□ -1.82e-7■□□□□ 9
CDC40O60508 SNX5-205ENST00000463050 845 ntTSL 21.98□□□□□ -2.092e-7■□□□□ 9
CDC40O60508 SNX5-209ENST00000476648 950 ntTSL 31.67□□□□□ -2.142e-7■□□□□ 9
CDC40O60508 DHRS2-203ENST00000432832 834 ntTSL 218.6■□□□□ 0.576e-15■□□□□ 9
CDC40O60508 DHRS2-205ENST00000553896 1352 ntTSL 1 (best)18.41■□□□□ 0.546e-15■□□□□ 9
CDC40O60508 HNRNPU-217ENST00000638952 5678 ntTSL 517.48■□□□□ 0.392e-6■□□□□ 9
CDC40O60508 HNRNPU-205ENST00000444376 6827 ntAPPRIS P3 TSL 1 (best) BASIC15.94■□□□□ 0.142e-6■□□□□ 9
CDC40O60508 HNRNPU-209ENST00000476241 4844 ntTSL 515.25■□□□□ 0.032e-6■□□□□ 9
CDC40O60508 HNRNPU-228ENST00000640306 2917 ntTSL 514.91□□□□□ -0.022e-6■□□□□ 9
CDC40O60508 HNRNPU-226ENST00000640218 6858 ntAPPRIS ALT2 TSL 1 (best) BASIC14.15□□□□□ -0.142e-6■□□□□ 9
CDC40O60508 HNRNPU-201ENST00000283179 3120 ntAPPRIS ALT2 TSL 5 BASIC13.79□□□□□ -0.22e-6■□□□□ 9
CDC40O60508 HNRNPU-214ENST00000638475 2698 ntTSL 513.41□□□□□ -0.262e-6■□□□□ 9
CDC40O60508 HNRNPU-224ENST00000640056 2045 ntTSL 59.05□□□□□ -0.962e-6■□□□□ 9
CDC40O60508 RNU6-45P-201ENST00000384471 107 ntBASIC1.5□□□□□ -2.174e-8■□□□□ 9
CDC40O60508 TMEM214-213ENST00000495312 804 ntTSL 225.44■■□□□ 1.666e-7■□□□□ 9
CDC40O60508 EP300-201ENST00000263253 9587 ntAPPRIS P1 TSL 1 (best) BASIC19.34■□□□□ 0.696e-7■□□□□ 9
CDC40O60508 TMEM214-202ENST00000321326 2700 ntTSL 218.34■□□□□ 0.536e-7■□□□□ 9
CDC40O60508 CCDC142-203ENST00000454193 2309 ntTSL 217.58■□□□□ 0.46e-7■□□□□ 9
CDC40O60508 TMEM214-203ENST00000404032 2830 ntTSL 2 BASIC17.4■□□□□ 0.386e-7■□□□□ 9
CDC40O60508 CCDC142-204ENST00000471713 1035 ntTSL 516.87■□□□□ 0.296e-7■□□□□ 9
CDC40O60508 TMEM214-201ENST00000238788 2990 ntAPPRIS P1 TSL 1 (best) BASIC16.3■□□□□ 0.26e-7■□□□□ 9
CDC40O60508 SPTAN1-217ENST00000629089 1546 ntTSL 216.08■□□□□ 0.166e-7■□□□□ 9
CDC40O60508 SPTAN1-214ENST00000628614 993 ntTSL 1 (best)15.91■□□□□ 0.146e-7■□□□□ 9
CDC40O60508 CCDC142-201ENST00000290418 2835 ntAPPRIS P2 TSL 2 BASIC15.56■□□□□ 0.086e-7■□□□□ 9
CDC40O60508 STAG3L5P-PVRIG2P-PILRB-203ENST00000470714 868 ntTSL 315.32■□□□□ 0.046e-7■□□□□ 9
CDC40O60508 CCDC142-205ENST00000472962 645 ntTSL 314.71□□□□□ -0.056e-7■□□□□ 9
CDC40O60508 STAG3L5P-205ENST00000473757 1255 ntTSL 1 (best) BASIC13.96□□□□□ -0.176e-7■□□□□ 9
CDC40O60508 SEPT9-224ENST00000589246 594 ntTSL 213.77□□□□□ -0.216e-7■□□□□ 9
CDC40O60508 STAG3L5P-PVRIG2P-PILRB-202ENST00000444874 2661 ntTSL 212.89□□□□□ -0.356e-7■□□□□ 9
CDC40O60508 CCDC142-207ENST00000474681 735 ntTSL 512.63□□□□□ -0.396e-7■□□□□ 9
CDC40O60508 CCDC142-202ENST00000393965 3406 ntAPPRIS ALT2 TSL 1 (best) BASIC12.4□□□□□ -0.426e-7■□□□□ 9
CDC40O60508 HECTD1-213ENST00000556224 3267 ntTSL 512.24□□□□□ -0.456e-7■□□□□ 9
CDC40O60508 STAG3L5P-PVRIG2P-PILRB-205ENST00000483329 819 ntTSL 511.24□□□□□ -0.616e-7■□□□□ 9
Retrieved 100 of 5,364 protein–RNA pairs in 340.7 ms