Protein–RNA interactions for Protein: Q9Y5Y9

SCN10A, Sodium channel protein type 10 subunit alpha, humanhuman

Predictions only

Length 1,956 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
SCN10AQ9Y5Y9 UBE2A-207ENST00000628549 934 ntTSL 2 BASIC30■■■□□ 2.39
SCN10AQ9Y5Y9 RP9P-201ENST00000381639 1303 ntTSL 1 (best) BASIC30■■■□□ 2.39
SCN10AQ9Y5Y9 HINT2-201ENST00000259667 628 ntAPPRIS P1 TSL 1 (best) BASIC29.99■■■□□ 2.39
SCN10AQ9Y5Y9 MXD3-203ENST00000439742 1483 ntAPPRIS P1 TSL 1 (best) BASIC29.99■■■□□ 2.39
SCN10AQ9Y5Y9 AC021231.2-201ENST00000594613 730 ntBASIC29.98■■■□□ 2.39
SCN10AQ9Y5Y9 SCARA3-202ENST00000337221 1910 ntTSL 1 (best) BASIC29.98■■■□□ 2.39
SCN10AQ9Y5Y9 AC108673.1-201ENST00000510422 1159 ntBASIC29.97■■■□□ 2.39
SCN10AQ9Y5Y9 DEXI-201ENST00000331808 1561 ntAPPRIS P1 TSL 1 (best) BASIC29.97■■■□□ 2.39
SCN10AQ9Y5Y9 SLC9A3R2-202ENST00000432365 1564 ntTSL 1 (best) BASIC29.95■■■□□ 2.38
SCN10AQ9Y5Y9 MACF1-219ENST00000484793 834 ntTSL 2 BASIC29.94■■■□□ 2.38
SCN10AQ9Y5Y9 SLC2A4RG-201ENST00000266077 1731 ntAPPRIS P1 TSL 1 (best) BASIC29.94■■■□□ 2.38
SCN10AQ9Y5Y9 DOCK5-202ENST00000410074 786 ntTSL 2 BASIC29.94■■■□□ 2.38
SCN10AQ9Y5Y9 FOXD1-202ENST00000615637 2272 ntAPPRIS P1 BASIC29.93■■■□□ 2.38
SCN10AQ9Y5Y9 ADRA2C-202ENST00000509482 1600 ntTSL 3 BASIC29.93■■■□□ 2.38
SCN10AQ9Y5Y9 DDN-AS1-203ENST00000552284 934 ntTSL 3 BASIC29.93■■■□□ 2.38
SCN10AQ9Y5Y9 MIR6090-201ENST00000622481 60 ntBASIC29.93■■■□□ 2.38
SCN10AQ9Y5Y9 HOXB3-207ENST00000472863 1909 ntTSL 2 BASIC29.93■■■□□ 2.38
SCN10AQ9Y5Y9 SCX-201ENST00000567180 999 ntAPPRIS P1 TSL 1 (best) BASIC29.92■■■□□ 2.38
SCN10AQ9Y5Y9 POLR1D-201ENST00000302979 1166 ntAPPRIS P2 TSL 1 (best) BASIC29.92■■■□□ 2.38
SCN10AQ9Y5Y9 RPS2-201ENST00000343262 985 ntAPPRIS P1 TSL 1 (best) BASIC29.9■■■□□ 2.38
SCN10AQ9Y5Y9 MIR4449-201ENST00000578365 66 ntBASIC29.9■■■□□ 2.38
SCN10AQ9Y5Y9 ECI1-207ENST00000570258 1512 ntAPPRIS ALT2 TSL 5 BASIC29.9■■■□□ 2.38
SCN10AQ9Y5Y9 UBE2S-203ENST00000589978 496 ntTSL 5 BASIC29.89■■■□□ 2.38
SCN10AQ9Y5Y9 KCNQ5-204ENST00000370392 1469 ntTSL 1 (best) BASIC29.89■■■□□ 2.38
SCN10AQ9Y5Y9 CIB2-204ENST00000557846 934 ntTSL 3 BASIC29.88■■■□□ 2.37
SCN10AQ9Y5Y9 AC012615.2-201ENST00000586259 447 ntTSL 4 BASIC29.88■■■□□ 2.37
SCN10AQ9Y5Y9 RASGEF1C-207ENST00000615330 2268 ntTSL 5 BASIC29.88■■■□□ 2.37
SCN10AQ9Y5Y9 CIB1-201ENST00000328649 1247 ntAPPRIS P1 TSL 1 (best) BASIC29.87■■■□□ 2.37
SCN10AQ9Y5Y9 CIB1-202ENST00000612800 1096 ntTSL 1 (best) BASIC29.87■■■□□ 2.37
SCN10AQ9Y5Y9 GALK1-205ENST00000588479 1866 ntAPPRIS P1 TSL 1 (best) BASIC29.87■■■□□ 2.37
SCN10AQ9Y5Y9 MRPL9-201ENST00000368829 882 ntAPPRIS ALT2 TSL 2 BASIC29.86■■■□□ 2.37
SCN10AQ9Y5Y9 AL589765.4-201ENST00000512280 382 ntTSL 3 BASIC29.86■■■□□ 2.37
SCN10AQ9Y5Y9 SAMD1-202ENST00000533683 2164 ntAPPRIS P5 TSL 1 (best) BASIC29.86■■■□□ 2.37
SCN10AQ9Y5Y9 MISP3-202ENST00000587086 1535 ntAPPRIS P2 TSL 1 (best) BASIC29.84■■■□□ 2.37
SCN10AQ9Y5Y9 GRPEL2-204ENST00000513661 546 ntTSL 2 BASIC29.83■■■□□ 2.37
SCN10AQ9Y5Y9 BTBD19-203ENST00000450269 1572 ntAPPRIS P1 TSL 5 BASIC29.83■■■□□ 2.37
SCN10AQ9Y5Y9 MIR3648-2-201ENST00000581792 180 ntBASIC29.81■■■□□ 2.36
SCN10AQ9Y5Y9 MIR3648-1-201ENST00000615959 180 ntBASIC29.81■■■□□ 2.36
SCN10AQ9Y5Y9 SNTG2-201ENST00000308624 1888 ntAPPRIS P1 TSL 1 (best) BASIC29.81■■■□□ 2.36
SCN10AQ9Y5Y9 STK25-202ENST00000401869 2251 ntAPPRIS P1 TSL 1 (best) BASIC29.81■■■□□ 2.36
SCN10AQ9Y5Y9 MIR639-201ENST00000384974 98 ntBASIC29.8■■■□□ 2.36
SCN10AQ9Y5Y9 GDI1-215ENST00000630693 786 ntTSL 4 BASIC29.8■■■□□ 2.36
SCN10AQ9Y5Y9 TUBB6-201ENST00000317702 2064 ntAPPRIS P1 TSL 1 (best) BASIC29.8■■■□□ 2.36
SCN10AQ9Y5Y9 ANGPTL6-204ENST00000592641 1781 ntAPPRIS P1 TSL 1 (best) BASIC29.79■■■□□ 2.36
SCN10AQ9Y5Y9 NREP-216ENST00000508870 540 ntAPPRIS P1 TSL 4 BASIC29.79■■■□□ 2.36
SCN10AQ9Y5Y9 CR559946.2-201ENST00000623684 991 ntBASIC29.79■■■□□ 2.36
SCN10AQ9Y5Y9 RDX-206ENST00000528900 1814 ntTSL 1 (best) BASIC29.79■■■□□ 2.36
SCN10AQ9Y5Y9 RNF166-209ENST00000567844 633 ntTSL 5 BASIC29.78■■■□□ 2.36
SCN10AQ9Y5Y9 PLEKHJ1-201ENST00000326631 1206 ntAPPRIS P1 TSL 1 (best) BASIC29.77■■■□□ 2.36
SCN10AQ9Y5Y9 AC016575.1-201ENST00000607026 382 ntBASIC29.77■■■□□ 2.36
SCN10AQ9Y5Y9 VEGFA-226ENST00000611736 1239 ntTSL 1 (best) BASIC29.77■■■□□ 2.36
SCN10AQ9Y5Y9 HSD17B1-201ENST00000225929 1265 ntAPPRIS ALT2 TSL 2 BASIC29.76■■■□□ 2.35
SCN10AQ9Y5Y9 AC105285.1-201ENST00000500914 2036 ntTSL 1 (best) BASIC29.75■■■□□ 2.35
SCN10AQ9Y5Y9 KLC2-205ENST00000394078 1557 ntTSL 5 BASIC29.75■■■□□ 2.35
SCN10AQ9Y5Y9 AGPS-202ENST00000409888 815 ntTSL 4 BASIC29.75■■■□□ 2.35
SCN10AQ9Y5Y9 TRIM52-AS1-203ENST00000509252 529 ntTSL 3 BASIC29.75■■■□□ 2.35
SCN10AQ9Y5Y9 KRT18-201ENST00000388835 1562 ntAPPRIS P1 TSL 1 (best) BASIC29.74■■■□□ 2.35
SCN10AQ9Y5Y9 AGPAT2-202ENST00000371696 1512 ntAPPRIS P1 TSL 1 (best) BASIC29.74■■■□□ 2.35
SCN10AQ9Y5Y9 LINC01971-201ENST00000617888 1048 ntBASIC29.73■■■□□ 2.35
SCN10AQ9Y5Y9 RP9-201ENST00000297157 1121 ntAPPRIS P2 TSL 1 (best) BASIC29.72■■■□□ 2.35
SCN10AQ9Y5Y9 CENPV-201ENST00000299736 1165 ntAPPRIS P1 TSL 1 (best) BASIC29.72■■■□□ 2.35
SCN10AQ9Y5Y9 C11orf63-202ENST00000307257 1964 ntTSL 2 BASIC29.72■■■□□ 2.35
SCN10AQ9Y5Y9 AL118558.1-203ENST00000553701 447 ntTSL 3 BASIC29.72■■■□□ 2.35
SCN10AQ9Y5Y9 C7orf50-202ENST00000397098 2131 ntAPPRIS P2 TSL 1 (best) BASIC29.71■■■□□ 2.35
SCN10AQ9Y5Y9 AC120057.4-201ENST00000624722 1615 ntBASIC29.71■■■□□ 2.35
SCN10AQ9Y5Y9 DTNBP1-202ENST00000344537 1403 ntAPPRIS P1 TSL 1 (best) BASIC29.71■■■□□ 2.35
SCN10AQ9Y5Y9 MAD2L2-207ENST00000376692 1118 ntAPPRIS P1 TSL 1 (best) BASIC29.71■■■□□ 2.35
SCN10AQ9Y5Y9 CLEC3B-202ENST00000428034 752 ntTSL 2 BASIC29.71■■■□□ 2.35
SCN10AQ9Y5Y9 NOXA1-201ENST00000341349 1678 ntAPPRIS P1 TSL 1 (best) BASIC29.71■■■□□ 2.35
SCN10AQ9Y5Y9 PRSS41-201ENST00000399677 1127 ntAPPRIS P1 TSL 5 BASIC29.7■■■□□ 2.34
SCN10AQ9Y5Y9 FMR1-219ENST00000621453 1864 ntTSL 1 (best) BASIC29.69■■■□□ 2.34
SCN10AQ9Y5Y9 PCYT2-206ENST00000571105 1628 ntTSL 5 BASIC29.69■■■□□ 2.34
SCN10AQ9Y5Y9 DUX4L11-201ENST00000611504 1267 ntBASIC29.69■■■□□ 2.34
SCN10AQ9Y5Y9 DUX4L12-201ENST00000614593 1267 ntBASIC29.69■■■□□ 2.34
SCN10AQ9Y5Y9 DUX4L14-201ENST00000621227 1267 ntBASIC29.69■■■□□ 2.34
SCN10AQ9Y5Y9 SH3GLB2-201ENST00000372554 1985 ntTSL 1 (best) BASIC29.68■■■□□ 2.34
SCN10AQ9Y5Y9 CHST12-204ENST00000618655 2131 ntAPPRIS P1 TSL 1 (best) BASIC29.68■■■□□ 2.34
SCN10AQ9Y5Y9 ATP6V1E2-204ENST00000522587 1559 ntAPPRIS P1 TSL 3 BASIC29.67■■■□□ 2.34
SCN10AQ9Y5Y9 CCM2-201ENST00000258781 1894 ntAPPRIS P3 TSL 1 (best) BASIC29.65■■■□□ 2.34
SCN10AQ9Y5Y9 TCAM1P-201ENST00000463377 452 ntTSL 3 BASIC29.64■■■□□ 2.34
SCN10AQ9Y5Y9 C16orf95-205ENST00000567970 1031 ntAPPRIS ALT2 TSL 5 BASIC29.64■■■□□ 2.34
SCN10AQ9Y5Y9 HNRNPAB-206ENST00000506339 1747 ntAPPRIS ALT2 TSL 5 BASIC29.64■■■□□ 2.34
SCN10AQ9Y5Y9 U2AF1L5-201ENST00000610664 897 ntAPPRIS P5 TSL 1 (best) BASIC29.64■■■□□ 2.34
SCN10AQ9Y5Y9 FTCD-202ENST00000397743 1834 ntTSL 1 (best) BASIC29.62■■■□□ 2.33
SCN10AQ9Y5Y9 CALM3-209ENST00000597743 577 ntTSL 4 BASIC29.62■■■□□ 2.33
SCN10AQ9Y5Y9 SLC35D2-203ENST00000375259 1361 ntTSL 1 (best) BASIC29.61■■■□□ 2.33
SCN10AQ9Y5Y9 ZBTB12-201ENST00000375527 1875 ntAPPRIS P1 TSL 1 (best) BASIC29.61■■■□□ 2.33
SCN10AQ9Y5Y9 H2AFV-204ENST00000350771 687 ntTSL 2 BASIC29.61■■■□□ 2.33
SCN10AQ9Y5Y9 PIK3R2-208ENST00000617642 1446 ntTSL 5 BASIC29.6■■■□□ 2.33
SCN10AQ9Y5Y9 AURKAIP1-203ENST00000338370 1072 ntAPPRIS P1 TSL 1 (best) BASIC29.6■■■□□ 2.33
SCN10AQ9Y5Y9 AC004837.3-201ENST00000420748 565 ntTSL 4 BASIC29.6■■■□□ 2.33
SCN10AQ9Y5Y9 P2RX2-203ENST00000350048 1344 ntTSL 1 (best) BASIC29.59■■■□□ 2.33
SCN10AQ9Y5Y9 TRNP1-201ENST00000522111 1958 ntAPPRIS P2 TSL 1 (best) BASIC29.59■■■□□ 2.33
SCN10AQ9Y5Y9 SSBP3-204ENST00000371320 2077 ntAPPRIS P3 TSL 1 (best) BASIC29.59■■■□□ 2.33
SCN10AQ9Y5Y9 CHPT1-201ENST00000229266 1585 ntAPPRIS P2 TSL 1 (best) BASIC29.58■■■□□ 2.33
SCN10AQ9Y5Y9 GADD45G-201ENST00000252506 1065 ntAPPRIS P1 TSL 1 (best) BASIC29.57■■■□□ 2.32
SCN10AQ9Y5Y9 C5orf66-AS1-201ENST00000507035 843 ntTSL 2 BASIC29.57■■■□□ 2.32
SCN10AQ9Y5Y9 CLDND1-226ENST00000513287 999 ntAPPRIS P1 TSL 2 BASIC29.57■■■□□ 2.32
SCN10AQ9Y5Y9 DTNBP1-212ENST00000622898 1305 ntTSL 1 (best) BASIC29.56■■■□□ 2.32
SCN10AQ9Y5Y9 U2AF1-201ENST00000291552 962 ntAPPRIS P3 TSL 1 (best) BASIC29.56■■■□□ 2.32
Retrieved 100 of 98,524 protein–RNA pairs in 26.9 ms