Protein–RNA interactions for Protein: Q9Y5X4

NR2E3, Photoreceptor-specific nuclear receptor, humanhuman

Predictions only

Length 410 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
NR2E3Q9Y5X4 MRPL9-201ENST00000368829 882 ntAPPRIS ALT2 TSL 2 BASIC30.24■■■□□ 2.43
NR2E3Q9Y5X4 ATRAID-201ENST00000380171 1240 ntTSL 1 (best) BASIC30.24■■■□□ 2.43
NR2E3Q9Y5X4 AL589765.4-201ENST00000512280 382 ntTSL 3 BASIC30.24■■■□□ 2.43
NR2E3Q9Y5X4 GADD45A-205ENST00000617962 1142 ntTSL 1 (best) BASIC30.22■■■□□ 2.43
NR2E3Q9Y5X4 MAPK3-202ENST00000322266 1743 ntTSL 5 BASIC30.22■■■□□ 2.43
NR2E3Q9Y5X4 KIAA2013-203ENST00000616327 2170 ntAPPRIS P1 TSL 5 BASIC30.21■■■□□ 2.43
NR2E3Q9Y5X4 TXNL4A-210ENST00000591711 669 ntTSL 2 BASIC30.21■■■□□ 2.43
NR2E3Q9Y5X4 AC007383.2-202ENST00000435627 482 ntTSL 2 BASIC30.2■■■□□ 2.43
NR2E3Q9Y5X4 MNX1-207ENST00000543409 1620 ntAPPRIS ALT2 TSL 1 (best) BASIC30.2■■■□□ 2.43
NR2E3Q9Y5X4 NEURL1B-203ENST00000522853 1263 ntTSL 1 (best) BASIC30.19■■■□□ 2.42
NR2E3Q9Y5X4 ABHD17AP5-201ENST00000580133 923 ntBASIC30.19■■■□□ 2.42
NR2E3Q9Y5X4 NFKBIA-209ENST00000557389 1537 ntTSL 2 BASIC30.17■■■□□ 2.42
NR2E3Q9Y5X4 DUSP14-206ENST00000617516 1537 ntAPPRIS P1 TSL 1 (best) BASIC30.17■■■□□ 2.42
NR2E3Q9Y5X4 MAPK4-202ENST00000540640 1576 ntTSL 2 BASIC30.16■■■□□ 2.42
NR2E3Q9Y5X4 SLC25A10-203ENST00000545862 1911 ntTSL 1 (best) BASIC30.16■■■□□ 2.42
NR2E3Q9Y5X4 GNB5-202ENST00000358784 1735 ntAPPRIS ALT1 TSL 1 (best) BASIC30.16■■■□□ 2.42
NR2E3Q9Y5X4 PIGX-201ENST00000296333 953 ntAPPRIS ALT2 TSL 2 BASIC30.15■■■□□ 2.42
NR2E3Q9Y5X4 RARRES2P2-201ENST00000394842 485 ntBASIC30.15■■■□□ 2.42
NR2E3Q9Y5X4 DCUN1D5-201ENST00000260247 1337 ntAPPRIS P1 TSL 1 (best) BASIC30.15■■■□□ 2.42
NR2E3Q9Y5X4 CRIP1-201ENST00000330233 1311 ntAPPRIS P1 TSL 1 (best) BASIC30.14■■■□□ 2.42
NR2E3Q9Y5X4 AC068134.2-201ENST00000437095 576 ntTSL 3 BASIC30.13■■■□□ 2.41
NR2E3Q9Y5X4 PRSS41-201ENST00000399677 1127 ntAPPRIS P1 TSL 5 BASIC30.12■■■□□ 2.41
NR2E3Q9Y5X4 MIR6090-201ENST00000622481 60 ntBASIC30.12■■■□□ 2.41
NR2E3Q9Y5X4 DEXI-201ENST00000331808 1561 ntAPPRIS P1 TSL 1 (best) BASIC30.11■■■□□ 2.41
NR2E3Q9Y5X4 PLEKHJ1-201ENST00000326631 1206 ntAPPRIS P1 TSL 1 (best) BASIC30.1■■■□□ 2.41
NR2E3Q9Y5X4 DOCK5-202ENST00000410074 786 ntTSL 2 BASIC30.1■■■□□ 2.41
NR2E3Q9Y5X4 ELOC-207ENST00000522337 816 ntAPPRIS P1 TSL 2 BASIC30.1■■■□□ 2.41
NR2E3Q9Y5X4 C16orf95-206ENST00000618367 974 ntAPPRIS ALT2 TSL 2 BASIC30.1■■■□□ 2.41
NR2E3Q9Y5X4 SLC35D2-203ENST00000375259 1361 ntTSL 1 (best) BASIC30.1■■■□□ 2.41
NR2E3Q9Y5X4 KCTD5-202ENST00000564195 774 ntTSL 5 BASIC30.09■■■□□ 2.41
NR2E3Q9Y5X4 METRNL-202ENST00000570778 967 ntTSL 5 BASIC30.09■■■□□ 2.41
NR2E3Q9Y5X4 CYP26C1-201ENST00000285949 1569 ntAPPRIS P1 TSL 1 (best) BASIC30.07■■■□□ 2.4
NR2E3Q9Y5X4 DTNBP1-212ENST00000622898 1305 ntTSL 1 (best) BASIC30.06■■■□□ 2.4
NR2E3Q9Y5X4 AKR1E2-201ENST00000298375 1566 ntAPPRIS P1 TSL 1 (best) BASIC30.06■■■□□ 2.4
NR2E3Q9Y5X4 ARL6IP4-211ENST00000454885 1318 ntAPPRIS ALT2 TSL 1 (best) BASIC30.05■■■□□ 2.4
NR2E3Q9Y5X4 AL139393.1-201ENST00000417479 573 ntTSL 5 BASIC30.05■■■□□ 2.4
NR2E3Q9Y5X4 U2AF1L5-201ENST00000610664 897 ntAPPRIS P5 TSL 1 (best) BASIC30.05■■■□□ 2.4
NR2E3Q9Y5X4 MAPK3-205ENST00000395202 1008 ntTSL 1 (best) BASIC30.04■■■□□ 2.4
NR2E3Q9Y5X4 AC012615.2-201ENST00000586259 447 ntTSL 4 BASIC30.04■■■□□ 2.4
NR2E3Q9Y5X4 RCE1-201ENST00000309657 1485 ntAPPRIS P1 TSL 1 (best) BASIC30.03■■■□□ 2.4
NR2E3Q9Y5X4 KCTD17-201ENST00000402077 1691 ntAPPRIS P3 TSL 1 (best) BASIC30.02■■■□□ 2.4
NR2E3Q9Y5X4 CRNDE-206ENST00000559432 587 ntTSL 3 BASIC30.02■■■□□ 2.4
NR2E3Q9Y5X4 MISP3-202ENST00000587086 1535 ntAPPRIS P2 TSL 1 (best) BASIC30.01■■■□□ 2.4
NR2E3Q9Y5X4 TCAM1P-201ENST00000463377 452 ntTSL 3 BASIC30.01■■■□□ 2.39
NR2E3Q9Y5X4 UBE2S-203ENST00000589978 496 ntTSL 5 BASIC30.01■■■□□ 2.39
NR2E3Q9Y5X4 VEGFA-226ENST00000611736 1239 ntTSL 1 (best) BASIC30■■■□□ 2.39
NR2E3Q9Y5X4 EBPL-201ENST00000242827 914 ntAPPRIS P1 TSL 1 (best) BASIC29.99■■■□□ 2.39
NR2E3Q9Y5X4 RANBP1-202ENST00000402752 1132 ntAPPRIS ALT1 TSL 1 (best) BASIC29.99■■■□□ 2.39
NR2E3Q9Y5X4 CSNK1E-205ENST00000405675 2127 ntTSL 5 BASIC29.99■■■□□ 2.39
NR2E3Q9Y5X4 TPRG1L-201ENST00000344579 2189 ntTSL 1 (best) BASIC29.98■■■□□ 2.39
NR2E3Q9Y5X4 H2AFV-204ENST00000350771 687 ntTSL 2 BASIC29.98■■■□□ 2.39
NR2E3Q9Y5X4 FKBP1A-210ENST00000614856 562 ntTSL 2 BASIC29.97■■■□□ 2.39
NR2E3Q9Y5X4 AP000547.3-202ENST00000592107 1019 ntTSL 1 (best) BASIC29.94■■■□□ 2.38
NR2E3Q9Y5X4 SCX-201ENST00000567180 999 ntAPPRIS P1 TSL 1 (best) BASIC29.93■■■□□ 2.38
NR2E3Q9Y5X4 SRP68-213ENST00000629930 165 ntTSL 5 BASIC29.93■■■□□ 2.38
NR2E3Q9Y5X4 DUX4L13-201ENST00000554103 1267 ntBASIC29.92■■■□□ 2.38
NR2E3Q9Y5X4 DUX4L15-201ENST00000611059 1267 ntBASIC29.92■■■□□ 2.38
NR2E3Q9Y5X4 DUX4L23-201ENST00000615195 1269 ntBASIC29.92■■■□□ 2.38
NR2E3Q9Y5X4 DUX4L24-201ENST00000617576 1269 ntBASIC29.92■■■□□ 2.38
NR2E3Q9Y5X4 DUX4L22-201ENST00000618238 1269 ntBASIC29.92■■■□□ 2.38
NR2E3Q9Y5X4 DUX4L20-201ENST00000619712 1269 ntBASIC29.92■■■□□ 2.38
NR2E3Q9Y5X4 DUX4L21-201ENST00000622058 1269 ntBASIC29.92■■■□□ 2.38
NR2E3Q9Y5X4 DUX4L10-201ENST00000622460 1267 ntBASIC29.92■■■□□ 2.38
NR2E3Q9Y5X4 DUX4L25-201ENST00000624915 1269 ntBASIC29.92■■■□□ 2.38
NR2E3Q9Y5X4 VEGFA-202ENST00000324450 954 ntTSL 1 (best) BASIC29.91■■■□□ 2.38
NR2E3Q9Y5X4 VEGFA-203ENST00000372055 1286 ntTSL 1 (best) BASIC29.91■■■□□ 2.38
NR2E3Q9Y5X4 VEGFA-213ENST00000482630 1146 ntTSL 1 (best) BASIC29.91■■■□□ 2.38
NR2E3Q9Y5X4 VEGFA-227ENST00000615393 984 ntTSL 1 (best) BASIC29.91■■■□□ 2.38
NR2E3Q9Y5X4 VEGFA-228ENST00000617771 1116 ntTSL 1 (best) BASIC29.91■■■□□ 2.38
NR2E3Q9Y5X4 VEGFA-229ENST00000621747 1116 ntAPPRIS ALT2 TSL 1 (best) BASIC29.91■■■□□ 2.38
NR2E3Q9Y5X4 VEGFA-230ENST00000640482 1065 ntAPPRIS ALT2 TSL 1 (best) BASIC29.91■■■□□ 2.38
NR2E3Q9Y5X4 VEGFA-232ENST00000640653 1170 ntAPPRIS ALT2 TSL 1 (best) BASIC29.91■■■□□ 2.38
NR2E3Q9Y5X4 DBP-205ENST00000601104 1489 ntTSL 1 (best) BASIC29.91■■■□□ 2.38
NR2E3Q9Y5X4 CTDNEP1-208ENST00000573600 1724 ntAPPRIS P1 TSL 5 BASIC29.91■■■□□ 2.38
NR2E3Q9Y5X4 SSBP3-204ENST00000371320 2077 ntAPPRIS P3 TSL 1 (best) BASIC29.9■■■□□ 2.38
NR2E3Q9Y5X4 AGAP1-204ENST00000409457 2165 ntTSL 1 (best) BASIC29.9■■■□□ 2.38
NR2E3Q9Y5X4 RRAD-202ENST00000420652 1476 ntAPPRIS P1 TSL 1 (best) BASIC29.88■■■□□ 2.37
NR2E3Q9Y5X4 HES6-205ENST00000409356 528 ntTSL 2 BASIC29.88■■■□□ 2.37
NR2E3Q9Y5X4 RNF126P1-201ENST00000567452 1320 ntBASIC29.88■■■□□ 2.37
NR2E3Q9Y5X4 AC016595.1-201ENST00000559410 383 ntTSL 3 BASIC29.87■■■□□ 2.37
NR2E3Q9Y5X4 GPX1-201ENST00000419349 1106 ntBASIC29.86■■■□□ 2.37
NR2E3Q9Y5X4 MAP3K8-203ENST00000375322 932 ntTSL 2 BASIC29.85■■■□□ 2.37
NR2E3Q9Y5X4 CDKN3-202ENST00000335183 893 ntAPPRIS P2 TSL 1 (best) BASIC29.84■■■□□ 2.37
NR2E3Q9Y5X4 AC009041.3-201ENST00000564390 879 ntTSL 5 BASIC29.84■■■□□ 2.37
NR2E3Q9Y5X4 CDKN3-211ENST00000611205 874 ntAPPRIS ALT2 TSL 5 BASIC29.84■■■□□ 2.37
NR2E3Q9Y5X4 CHMP4B-201ENST00000217402 1646 ntAPPRIS P1 TSL 1 (best) BASIC29.84■■■□□ 2.37
NR2E3Q9Y5X4 AC012354.3-201ENST00000623734 483 ntBASIC29.83■■■□□ 2.37
NR2E3Q9Y5X4 MPST-201ENST00000341116 1504 ntAPPRIS P1 TSL 5 BASIC29.82■■■□□ 2.36
NR2E3Q9Y5X4 PTPMT1-203ENST00000426530 1014 ntTSL 1 (best) BASIC29.82■■■□□ 2.36
NR2E3Q9Y5X4 CAAP1-205ENST00000520187 773 ntTSL 5 BASIC29.82■■■□□ 2.36
NR2E3Q9Y5X4 SSTR4-201ENST00000255008 1427 ntAPPRIS P1 BASIC29.81■■■□□ 2.36
NR2E3Q9Y5X4 HNRNPUL1-221ENST00000617305 1018 ntTSL 1 (best) BASIC29.81■■■□□ 2.36
NR2E3Q9Y5X4 KMT2E-AS1-201ENST00000453677 736 ntTSL 3 BASIC29.8■■■□□ 2.36
NR2E3Q9Y5X4 QDPR-201ENST00000281243 1648 ntAPPRIS P1 TSL 1 (best) BASIC29.79■■■□□ 2.36
NR2E3Q9Y5X4 ADRA1D-201ENST00000379453 2728 ntAPPRIS P1 TSL 1 (best) BASIC29.79■■■□□ 2.36
NR2E3Q9Y5X4 AC005540.1-201ENST00000413911 919 ntTSL 3 BASIC29.79■■■□□ 2.36
NR2E3Q9Y5X4 RNF150-204ENST00000507500 1530 ntTSL 1 (best) BASIC29.77■■■□□ 2.36
NR2E3Q9Y5X4 AC004837.3-201ENST00000420748 565 ntTSL 4 BASIC29.77■■■□□ 2.36
NR2E3Q9Y5X4 MXD3-208ENST00000513063 861 ntAPPRIS P1 TSL 5 BASIC29.76■■■□□ 2.35
NR2E3Q9Y5X4 NTF6A-201ENST00000591175 560 ntBASIC29.76■■■□□ 2.35
Retrieved 100 of 98,524 protein–RNA pairs in 11.2 ms