Protein–RNA interactions for Protein: Q9Y5H5

PCDHA9, Protocadherin alpha-9, humanhuman

Predictions only

Length 950 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
PCDHA9Q9Y5H5 ACTR3B-202ENST00000377776 1566 ntTSL 1 (best) BASIC25.64■■□□□ 1.69
PCDHA9Q9Y5H5 ST7-AS1-201ENST00000456775 1889 ntBASIC25.64■■□□□ 1.69
PCDHA9Q9Y5H5 LDB1-202ENST00000425280 2089 ntTSL 5 BASIC25.64■■□□□ 1.69
PCDHA9Q9Y5H5 LFNG-203ENST00000359574 1377 ntAPPRIS ALT1 TSL 1 (best) BASIC25.63■■□□□ 1.69
PCDHA9Q9Y5H5 AGFG1-205ENST00000409979 2089 ntAPPRIS ALT1 TSL 5 BASIC25.63■■□□□ 1.69
PCDHA9Q9Y5H5 ARL8A-201ENST00000272217 1793 ntAPPRIS P1 TSL 1 (best) BASIC25.62■■□□□ 1.69
PCDHA9Q9Y5H5 RTN4R-201ENST00000043402 2157 ntAPPRIS P2 TSL 1 (best) BASIC25.61■■□□□ 1.69
PCDHA9Q9Y5H5 ATPAF1-201ENST00000329231 1241 ntTSL 2 BASIC25.61■■□□□ 1.69
PCDHA9Q9Y5H5 IL13RA1-201ENST00000371642 1096 ntTSL 1 (best) BASIC25.61■■□□□ 1.69
PCDHA9Q9Y5H5 CCDC88C-205ENST00000553403 1651 ntTSL 1 (best) BASIC25.59■■□□□ 1.69
PCDHA9Q9Y5H5 SETD8P1-201ENST00000623146 1180 ntBASIC25.59■■□□□ 1.69
PCDHA9Q9Y5H5 CCND3-203ENST00000372991 2085 ntAPPRIS P1 TSL 1 (best) BASIC25.59■■□□□ 1.69
PCDHA9Q9Y5H5 CERS2-205ENST00000368954 2505 ntAPPRIS P1 TSL 1 (best) BASIC25.58■■□□□ 1.69
PCDHA9Q9Y5H5 HOXB3-211ENST00000490677 1109 ntTSL 1 (best) BASIC25.58■■□□□ 1.69
PCDHA9Q9Y5H5 SSBP4-202ENST00000348495 1721 ntAPPRIS ALT1 TSL 2 BASIC25.57■■□□□ 1.68
PCDHA9Q9Y5H5 TXN-202ENST00000374517 869 ntAPPRIS P1 TSL 1 (best) BASIC25.56■■□□□ 1.68
PCDHA9Q9Y5H5 HDAC3-201ENST00000305264 1959 ntAPPRIS P1 TSL 1 (best) BASIC25.56■■□□□ 1.68
PCDHA9Q9Y5H5 ZIC2-201ENST00000376335 2983 ntAPPRIS P1 TSL 1 (best) BASIC25.56■■□□□ 1.68
PCDHA9Q9Y5H5 ITGA9-203ENST00000422441 2282 ntTSL 1 (best) BASIC25.55■■□□□ 1.68
PCDHA9Q9Y5H5 CHPT1-205ENST00000549872 2001 ntAPPRIS ALT2 TSL 5 BASIC25.55■■□□□ 1.68
PCDHA9Q9Y5H5 HOXB3-210ENST00000489475 1845 ntTSL 2 BASIC25.54■■□□□ 1.68
PCDHA9Q9Y5H5 ARPC5L-202ENST00000353214 2507 ntAPPRIS P1 TSL 2 BASIC25.54■■□□□ 1.68
PCDHA9Q9Y5H5 WASH5P-204ENST00000632292 975 ntBASIC25.54■■□□□ 1.68
PCDHA9Q9Y5H5 ABHD17A-201ENST00000250974 1630 ntTSL 1 (best) BASIC25.54■■□□□ 1.68
PCDHA9Q9Y5H5 FEV-201ENST00000295727 1879 ntAPPRIS P1 TSL 1 (best) BASIC25.53■■□□□ 1.68
PCDHA9Q9Y5H5 GALK1-205ENST00000588479 1866 ntAPPRIS P1 TSL 1 (best) BASIC25.53■■□□□ 1.68
PCDHA9Q9Y5H5 LGALS3-201ENST00000254301 1146 ntAPPRIS P1 TSL 1 (best) BASIC25.53■■□□□ 1.68
PCDHA9Q9Y5H5 AL161658.1-201ENST00000623641 1967 ntBASIC25.53■■□□□ 1.68
PCDHA9Q9Y5H5 GAL3ST1-205ENST00000406361 1819 ntAPPRIS P1 TSL 2 BASIC25.51■■□□□ 1.67
PCDHA9Q9Y5H5 PDPK1-203ENST00000389224 2416 ntTSL 2 BASIC25.51■■□□□ 1.67
PCDHA9Q9Y5H5 NEUROG2-201ENST00000313341 2287 ntAPPRIS P1 TSL 1 (best) BASIC25.5■■□□□ 1.67
PCDHA9Q9Y5H5 C1orf122-204ENST00000468084 1234 ntAPPRIS ALT2 TSL 2 BASIC25.5■■□□□ 1.67
PCDHA9Q9Y5H5 SIGMAR1-205ENST00000477726 840 ntTSL 1 (best) BASIC25.5■■□□□ 1.67
PCDHA9Q9Y5H5 CNIH2-203ENST00000528852 1524 ntAPPRIS ALT1 TSL 1 (best) BASIC25.49■■□□□ 1.67
PCDHA9Q9Y5H5 HNRNPAB-206ENST00000506339 1747 ntAPPRIS ALT2 TSL 5 BASIC25.49■■□□□ 1.67
PCDHA9Q9Y5H5 TMEM9-201ENST00000367330 1959 ntAPPRIS P3 TSL 1 (best) BASIC25.48■■□□□ 1.67
PCDHA9Q9Y5H5 ARHGAP22-202ENST00000374170 2107 ntTSL 5 BASIC25.48■■□□□ 1.67
PCDHA9Q9Y5H5 RNF150-204ENST00000507500 1530 ntTSL 1 (best) BASIC25.47■■□□□ 1.67
PCDHA9Q9Y5H5 AUTS2-202ENST00000403018 957 ntTSL 1 (best) BASIC25.47■■□□□ 1.67
PCDHA9Q9Y5H5 COL13A1-203ENST00000398969 2267 ntAPPRIS ALT2 TSL 5 BASIC25.45■■□□□ 1.66
PCDHA9Q9Y5H5 KCNQ5-204ENST00000370392 1469 ntTSL 1 (best) BASIC25.45■■□□□ 1.66
PCDHA9Q9Y5H5 EFNA3-201ENST00000368408 1782 ntAPPRIS P1 TSL 1 (best) BASIC25.44■■□□□ 1.66
PCDHA9Q9Y5H5 PCBD2-201ENST00000254908 1223 ntAPPRIS P1 TSL 1 (best) BASIC25.44■■□□□ 1.66
PCDHA9Q9Y5H5 FOXQ1-201ENST00000296839 2309 ntAPPRIS P1 BASIC25.43■■□□□ 1.66
PCDHA9Q9Y5H5 MSX1-201ENST00000382723 1939 ntAPPRIS P1 TSL 1 (best) BASIC25.43■■□□□ 1.66
PCDHA9Q9Y5H5 SP8-201ENST00000361443 1714 ntAPPRIS P3 TSL 1 (best) BASIC25.43■■□□□ 1.66
PCDHA9Q9Y5H5 TM6SF1-202ENST00000322019 2074 ntAPPRIS P1 TSL 1 (best) BASIC25.43■■□□□ 1.66
PCDHA9Q9Y5H5 AL109917.1-201ENST00000412228 906 ntTSL 2 BASIC25.43■■□□□ 1.66
PCDHA9Q9Y5H5 PGM5-201ENST00000396392 1782 ntTSL 1 (best) BASIC25.43■■□□□ 1.66
PCDHA9Q9Y5H5 SIGMAR1-203ENST00000378892 1743 ntTSL 2 BASIC25.41■■□□□ 1.66
PCDHA9Q9Y5H5 AC068152.1-210ENST00000574741 836 ntTSL 3 BASIC25.41■■□□□ 1.66
PCDHA9Q9Y5H5 FAM117A-201ENST00000240364 2365 ntAPPRIS P2 TSL 1 (best) BASIC25.41■■□□□ 1.66
PCDHA9Q9Y5H5 TSPAN11-203ENST00000545802 1649 ntTSL 1 (best) BASIC25.41■■□□□ 1.66
PCDHA9Q9Y5H5 SLC52A2-201ENST00000329994 1896 ntAPPRIS P1 TSL 1 (best) BASIC25.4■■□□□ 1.66
PCDHA9Q9Y5H5 LRRC61-202ENST00000359623 1877 ntAPPRIS P1 TSL 2 BASIC25.4■■□□□ 1.66
PCDHA9Q9Y5H5 FOXE3-201ENST00000335071 1981 ntAPPRIS P1 BASIC25.4■■□□□ 1.66
PCDHA9Q9Y5H5 INAFM1-201ENST00000552360 1255 ntAPPRIS P1 BASIC25.4■■□□□ 1.66
PCDHA9Q9Y5H5 IL17D-201ENST00000304920 1861 ntAPPRIS P1 TSL 1 (best) BASIC25.39■■□□□ 1.66
PCDHA9Q9Y5H5 CCNYL1-205ENST00000420822 952 ntTSL 1 (best) BASIC25.38■■□□□ 1.65
PCDHA9Q9Y5H5 RAB26-201ENST00000210187 1675 ntAPPRIS P1 TSL 1 (best) BASIC25.38■■□□□ 1.65
PCDHA9Q9Y5H5 AC136428.2-201ENST00000563187 214 ntBASIC25.37■■□□□ 1.65
PCDHA9Q9Y5H5 AC097358.2-201ENST00000607541 1159 ntBASIC25.37■■□□□ 1.65
PCDHA9Q9Y5H5 FAAH-201ENST00000243167 2094 ntAPPRIS P1 TSL 1 (best) BASIC25.36■■□□□ 1.65
PCDHA9Q9Y5H5 ZNF787-203ENST00000610935 1925 ntAPPRIS P1 TSL 1 (best) BASIC25.36■■□□□ 1.65
PCDHA9Q9Y5H5 COL13A1-213ENST00000520267 2276 ntAPPRIS ALT2 TSL 5 BASIC25.34■■□□□ 1.65
PCDHA9Q9Y5H5 HES7-202ENST00000541682 1674 ntAPPRIS ALT1 TSL 1 (best) BASIC25.34■■□□□ 1.65
PCDHA9Q9Y5H5 RUNDC3A-206ENST00000590941 1675 ntTSL 1 (best) BASIC25.34■■□□□ 1.65
PCDHA9Q9Y5H5 GNPTAB-202ENST00000392919 760 ntTSL 1 (best) BASIC25.34■■□□□ 1.65
PCDHA9Q9Y5H5 RAB40C-201ENST00000248139 2699 ntAPPRIS P1 TSL 1 (best) BASIC25.34■■□□□ 1.65
PCDHA9Q9Y5H5 RHOC-208ENST00000369642 1355 ntAPPRIS P1 TSL 1 (best) BASIC25.33■■□□□ 1.65
PCDHA9Q9Y5H5 PGM5P2-201ENST00000613141 1980 ntTSL 1 (best) BASIC25.33■■□□□ 1.65
PCDHA9Q9Y5H5 LRRC75B-201ENST00000318753 1238 ntAPPRIS P1 TSL 1 (best) BASIC25.33■■□□□ 1.65
PCDHA9Q9Y5H5 ARTN-204ENST00000438616 889 ntTSL 1 (best) BASIC25.33■■□□□ 1.65
PCDHA9Q9Y5H5 AL135925.1-201ENST00000605920 1701 ntBASIC25.33■■□□□ 1.65
PCDHA9Q9Y5H5 CADPS-215ENST00000490353 2669 ntTSL 5 BASIC25.33■■□□□ 1.65
PCDHA9Q9Y5H5 PLSCR3-202ENST00000535512 2067 ntAPPRIS P1 TSL 1 (best) BASIC25.33■■□□□ 1.65
PCDHA9Q9Y5H5 COMMD3-201ENST00000376836 1342 ntAPPRIS P1 TSL 1 (best) BASIC25.33■■□□□ 1.64
PCDHA9Q9Y5H5 DPF1-202ENST00000412732 2303 ntTSL 1 (best) BASIC25.32■■□□□ 1.64
PCDHA9Q9Y5H5 TSPOAP1-AS1-203ENST00000579527 2042 ntTSL 2 BASIC25.32■■□□□ 1.64
PCDHA9Q9Y5H5 TESK1-201ENST00000336395 2421 ntAPPRIS P1 TSL 1 (best) BASIC25.32■■□□□ 1.64
PCDHA9Q9Y5H5 INPP5A-202ENST00000368593 1432 ntTSL 1 (best) BASIC25.32■■□□□ 1.64
PCDHA9Q9Y5H5 HOXD-AS2-202ENST00000440016 999 ntTSL 5 BASIC25.32■■□□□ 1.64
PCDHA9Q9Y5H5 NADK2-210ENST00000514504 1233 ntTSL 5 BASIC25.32■■□□□ 1.64
PCDHA9Q9Y5H5 TCEA2-204ENST00000395053 1733 ntTSL 1 (best) BASIC25.32■■□□□ 1.64
PCDHA9Q9Y5H5 SLC9A3R2-202ENST00000432365 1564 ntTSL 1 (best) BASIC25.31■■□□□ 1.64
PCDHA9Q9Y5H5 RASSF8-202ENST00000381352 2320 ntTSL 1 (best) BASIC25.31■■□□□ 1.64
PCDHA9Q9Y5H5 JMJD8-216ENST00000609261 1901 ntAPPRIS ALT2 TSL 1 (best) BASIC25.3■■□□□ 1.64
PCDHA9Q9Y5H5 UBALD2-203ENST00000589240 660 ntTSL 2 BASIC25.3■■□□□ 1.64
PCDHA9Q9Y5H5 CAHM-201ENST00000604200 896 ntBASIC25.3■■□□□ 1.64
PCDHA9Q9Y5H5 HNRNPAB-202ENST00000358344 1796 ntAPPRIS P4 TSL 1 (best) BASIC25.3■■□□□ 1.64
PCDHA9Q9Y5H5 AL391121.1-201ENST00000607967 1349 ntBASIC25.3■■□□□ 1.64
PCDHA9Q9Y5H5 SLC30A10-202ENST00000366926 1915 ntAPPRIS P1 TSL 1 (best) BASIC25.29■■□□□ 1.64
PCDHA9Q9Y5H5 LY6K-203ENST00000519387 963 ntAPPRIS ALT2 TSL 2 BASIC25.29■■□□□ 1.64
PCDHA9Q9Y5H5 AVEN-201ENST00000306730 1605 ntAPPRIS P1 TSL 1 (best) BASIC25.28■■□□□ 1.64
PCDHA9Q9Y5H5 ZFAND2B-204ENST00000409217 886 ntTSL 2 BASIC25.28■■□□□ 1.64
PCDHA9Q9Y5H5 AC006486.1-201ENST00000594664 634 ntAPPRIS P1 TSL 3 BASIC25.28■■□□□ 1.64
PCDHA9Q9Y5H5 PLSCR3-209ENST00000574401 2032 ntAPPRIS P1 TSL 1 (best) BASIC25.28■■□□□ 1.64
PCDHA9Q9Y5H5 FAM89B-201ENST00000316409 1409 ntTSL 1 (best) BASIC25.28■■□□□ 1.64
PCDHA9Q9Y5H5 CGREF1-204ENST00000402550 1575 ntTSL 2 BASIC25.27■■□□□ 1.64
PCDHA9Q9Y5H5 AC234582.1-201ENST00000447623 923 ntTSL 5 BASIC25.27■■□□□ 1.64
Retrieved 100 of 98,524 protein–RNA pairs in 16.4 ms