Protein–RNA interactions for Protein: Q9R1N9

Col13a1, Collagen alpha-1(XIII) chain, mousemouse

Predictions only

Length 751 aa.

Download Table  
Protein RNA Prediction (catRAPID) Interaction (Experimental data)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
Col13a1Q9R1N9 Ppp4c-211ENSMUST00000206570 1400 ntAPPRIS P1 TSL 1 (best) BASIC21.06■□□□□ 0.96
Col13a1Q9R1N9 E2f4-201ENSMUST00000015003 1993 ntAPPRIS P1 TSL 1 (best) BASIC21.06■□□□□ 0.96
Col13a1Q9R1N9 Iscu-203ENSMUST00000112312 1116 ntTSL 5 BASIC21.05■□□□□ 0.96
Col13a1Q9R1N9 Gm15672-201ENSMUST00000151512 1354 ntTSL 1 (best) BASIC21.04■□□□□ 0.96
Col13a1Q9R1N9 Dazap1-202ENSMUST00000105361 1537 ntAPPRIS ALT1 TSL 1 (best) BASIC21.04■□□□□ 0.96
Col13a1Q9R1N9 Eid2-201ENSMUST00000059596 1392 ntAPPRIS P1 BASIC21.03■□□□□ 0.96
Col13a1Q9R1N9 1110065P20Rik-201ENSMUST00000106190 968 ntAPPRIS P1 TSL 2 BASIC21.03■□□□□ 0.96
Col13a1Q9R1N9 Ssbp3-203ENSMUST00000097934 1742 ntAPPRIS ALT2 TSL 5 BASIC21.03■□□□□ 0.96
Col13a1Q9R1N9 Gas1-202ENSMUST00000223933 1155 ntAPPRIS P2 BASIC21.02■□□□□ 0.96
Col13a1Q9R1N9 St3gal5-201ENSMUST00000069994 2258 ntAPPRIS P3 TSL 1 (best) BASIC21.02■□□□□ 0.95
Col13a1Q9R1N9 Cadm1-210ENSMUST00000214542 899 ntTSL 1 (best) BASIC21.01■□□□□ 0.95
Col13a1Q9R1N9 Tmeff1-201ENSMUST00000030032 2461 ntAPPRIS P1 TSL 1 (best) BASIC21■□□□□ 0.95
Col13a1Q9R1N9 Sept11-208ENSMUST00000202308 1792 ntAPPRIS ALT1 TSL 5 BASIC21■□□□□ 0.95
Col13a1Q9R1N9 Gm11175-201ENSMUST00000116172 543 ntBASIC20.99■□□□□ 0.95
Col13a1Q9R1N9 Fbll1-201ENSMUST00000160726 1503 ntAPPRIS P1 BASIC20.99■□□□□ 0.95
Col13a1Q9R1N9 Raly-203ENSMUST00000109701 1709 ntAPPRIS P3 TSL 1 (best) BASIC20.98■□□□□ 0.95
Col13a1Q9R1N9 Rbfox2-201ENSMUST00000048145 1720 ntTSL 1 (best) BASIC20.98■□□□□ 0.95
Col13a1Q9R1N9 Ppp2r2d-201ENSMUST00000041097 2081 ntAPPRIS P1 TSL 1 (best) BASIC20.98■□□□□ 0.95
Col13a1Q9R1N9 Mir6538-201ENSMUST00000183713 110 ntBASIC20.97■□□□□ 0.95
Col13a1Q9R1N9 Cap2-205ENSMUST00000225824 1634 ntBASIC20.96■□□□□ 0.95
Col13a1Q9R1N9 Gm26508-201ENSMUST00000181285 1516 ntTSL 5 BASIC20.96■□□□□ 0.95
Col13a1Q9R1N9 Gm11599-201ENSMUST00000118720 878 ntBASIC20.96■□□□□ 0.95
Col13a1Q9R1N9 Dbp-204ENSMUST00000211513 1156 ntTSL 5 BASIC20.96■□□□□ 0.95
Col13a1Q9R1N9 Gm2415-204ENSMUST00000190235 2004 ntBASIC20.95■□□□□ 0.94
Col13a1Q9R1N9 Bcl7b-202ENSMUST00000111187 564 ntTSL 1 (best) BASIC20.95■□□□□ 0.94
Col13a1Q9R1N9 E130304I02Rik-202ENSMUST00000187873 696 ntTSL 1 (best) BASIC20.95■□□□□ 0.94
Col13a1Q9R1N9 Ppa2-201ENSMUST00000029644 1226 ntAPPRIS P3 TSL 1 (best) BASIC20.95■□□□□ 0.94
Col13a1Q9R1N9 Tnfsfm13-202ENSMUST00000174159 1470 ntAPPRIS ALT2 TSL 2 BASIC20.94■□□□□ 0.94
Col13a1Q9R1N9 Endog-201ENSMUST00000015481 1063 ntAPPRIS P1 TSL 1 (best) BASIC20.94■□□□□ 0.94
Col13a1Q9R1N9 Smarcad1-211ENSMUST00000204696 734 ntTSL 1 (best) BASIC20.94■□□□□ 0.94
Col13a1Q9R1N9 Igfbp7-201ENSMUST00000046746 1116 ntAPPRIS ALT2 TSL 1 (best) BASIC20.94■□□□□ 0.94
Col13a1Q9R1N9 Kmt5a-202ENSMUST00000100709 1425 ntTSL 1 (best) BASIC20.94■□□□□ 0.94
Col13a1Q9R1N9 Hspd1-201ENSMUST00000027123 2423 ntAPPRIS P1 TSL 1 (best) BASIC20.93■□□□□ 0.94
Col13a1Q9R1N9 Sntb1-202ENSMUST00000110200 1225 ntTSL 1 (best) BASIC20.93■□□□□ 0.94
Col13a1Q9R1N9 A830010M20Rik-202ENSMUST00000094541 1134 ntTSL 5 BASIC20.93■□□□□ 0.94
Col13a1Q9R1N9 Slc30a2-203ENSMUST00000105873 1224 ntTSL 5 BASIC20.92■□□□□ 0.94
Col13a1Q9R1N9 4930577N17Rik-201ENSMUST00000139771 1625 ntBASIC20.92■□□□□ 0.94
Col13a1Q9R1N9 Mon2-207ENSMUST00000219203 1844 ntTSL 1 (best) BASIC20.92■□□□□ 0.94
Col13a1Q9R1N9 Cacfd1-203ENSMUST00000114005 1286 ntTSL 1 (best) BASIC20.91■□□□□ 0.94
Col13a1Q9R1N9 Osbpl1a-209ENSMUST00000122175 1203 ntTSL 1 (best) BASIC20.91■□□□□ 0.94
Col13a1Q9R1N9 Tcte2-204ENSMUST00000130033 1462 ntAPPRIS ALT2 TSL 1 (best) BASIC20.91■□□□□ 0.94
Col13a1Q9R1N9 Ube2m-201ENSMUST00000005714 1472 ntAPPRIS P1 TSL 1 (best) BASIC20.9■□□□□ 0.94
Col13a1Q9R1N9 Rpl31-203ENSMUST00000179954 630 ntAPPRIS P1 TSL 1 (best) BASIC20.9■□□□□ 0.94
Col13a1Q9R1N9 Rexo2-210ENSMUST00000217037 609 ntTSL 3 BASIC20.9■□□□□ 0.94
Col13a1Q9R1N9 Gm5814-201ENSMUST00000177586 378 ntAPPRIS P1 BASIC20.89■□□□□ 0.93
Col13a1Q9R1N9 Crem-227ENSMUST00000149803 1422 ntTSL 1 (best) BASIC20.88■□□□□ 0.93
Col13a1Q9R1N9 Flt3l-211ENSMUST00000211429 1358 ntAPPRIS ALT2 TSL 1 (best) BASIC20.88■□□□□ 0.93
Col13a1Q9R1N9 6330420H09Rik-201ENSMUST00000211371 1316 ntTSL 1 (best) BASIC20.88■□□□□ 0.93
Col13a1Q9R1N9 AC163623.1-201ENSMUST00000213738 727 ntAPPRIS P1 TSL 3 BASIC20.88■□□□□ 0.93
Col13a1Q9R1N9 A030003K21Rik-201ENSMUST00000222600 830 ntAPPRIS P1 BASIC20.88■□□□□ 0.93
Col13a1Q9R1N9 C330011M18Rik-201ENSMUST00000071067 1849 ntTSL 1 (best) BASIC20.87■□□□□ 0.93
Col13a1Q9R1N9 Rpsa-204ENSMUST00000217317 1599 ntAPPRIS P1 TSL 1 (best) BASIC20.86■□□□□ 0.93
Col13a1Q9R1N9 Spata1-201ENSMUST00000029839 1920 ntAPPRIS P1 TSL 1 (best) BASIC20.86■□□□□ 0.93
Col13a1Q9R1N9 Pwwp2a-202ENSMUST00000094294 1814 ntTSL 5 BASIC20.85■□□□□ 0.93
Col13a1Q9R1N9 Gm28052-201ENSMUST00000150388 380 ntTSL 3 BASIC20.85■□□□□ 0.93
Col13a1Q9R1N9 Nrg3-202ENSMUST00000168810 2175 ntAPPRIS ALT2 TSL 1 (best) BASIC20.85■□□□□ 0.93
Col13a1Q9R1N9 Fam196a-201ENSMUST00000171394 2490 ntAPPRIS P1 TSL 5 BASIC20.84■□□□□ 0.93
Col13a1Q9R1N9 Gm7334-201ENSMUST00000061681 1356 ntAPPRIS P1 BASIC20.84■□□□□ 0.93
Col13a1Q9R1N9 Egr3-201ENSMUST00000035908 1509 ntAPPRIS ALT1 TSL 1 (best) BASIC20.83■□□□□ 0.93
Col13a1Q9R1N9 Cpsf4-201ENSMUST00000070487 1606 ntTSL 1 (best) BASIC20.83■□□□□ 0.93
Col13a1Q9R1N9 Nelfe-204ENSMUST00000173357 1399 ntAPPRIS P1 TSL 1 (best) BASIC20.83■□□□□ 0.92
Col13a1Q9R1N9 Phlda1-201ENSMUST00000164773 1949 ntAPPRIS P1 TSL 1 (best) BASIC20.82■□□□□ 0.92
Col13a1Q9R1N9 Ccm2-201ENSMUST00000000388 1858 ntAPPRIS P1 TSL 1 (best) BASIC20.81■□□□□ 0.92
Col13a1Q9R1N9 Smagp-202ENSMUST00000172334 952 ntAPPRIS P1 TSL 2 BASIC20.81■□□□□ 0.92
Col13a1Q9R1N9 Ap1ar-210ENSMUST00000200409 2580 ntTSL 5 BASIC20.8■□□□□ 0.92
Col13a1Q9R1N9 Tmco6-201ENSMUST00000007046 1817 ntAPPRIS P1 TSL 1 (best) BASIC20.79■□□□□ 0.92
Col13a1Q9R1N9 Pm20d2-201ENSMUST00000098181 1445 ntAPPRIS P1 TSL 5 BASIC20.78■□□□□ 0.92
Col13a1Q9R1N9 Mapk3-202ENSMUST00000057669 1800 ntAPPRIS P2 TSL 1 (best) BASIC20.78■□□□□ 0.92
Col13a1Q9R1N9 Fam136a-201ENSMUST00000071492 1643 ntAPPRIS P1 TSL 1 (best) BASIC20.77■□□□□ 0.92
Col13a1Q9R1N9 A430072P03Rik-201ENSMUST00000161480 1510 ntTSL 1 (best) BASIC20.77■□□□□ 0.92
Col13a1Q9R1N9 Gm6658-202ENSMUST00000209493 1885 ntBASIC20.75■□□□□ 0.91
Col13a1Q9R1N9 Chtf8-205ENSMUST00000176515 694 ntTSL 2 BASIC20.75■□□□□ 0.91
Col13a1Q9R1N9 Kcnip2-208ENSMUST00000161886 693 ntAPPRIS P3 TSL 1 (best) BASIC20.74■□□□□ 0.91
Col13a1Q9R1N9 Trappc6b-203ENSMUST00000217863 797 ntTSL 2 BASIC20.74■□□□□ 0.91
Col13a1Q9R1N9 Pitpna-205ENSMUST00000179445 1665 ntAPPRIS ALT1 TSL 5 BASIC20.73■□□□□ 0.91
Col13a1Q9R1N9 Sugct-202ENSMUST00000220514 1351 ntTSL 1 (best) BASIC20.73■□□□□ 0.91
Col13a1Q9R1N9 A530058N18Rik-203ENSMUST00000135729 1405 ntTSL 1 (best) BASIC20.73■□□□□ 0.91
Col13a1Q9R1N9 Rab4b-201ENSMUST00000093040 1192 ntAPPRIS P1 TSL 1 (best) BASIC20.73■□□□□ 0.91
Col13a1Q9R1N9 Ildr2-207ENSMUST00000195557 1947 ntAPPRIS ALT2 TSL 1 (best) BASIC20.72■□□□□ 0.91
Col13a1Q9R1N9 Iffo2-203ENSMUST00000174078 5716 ntAPPRIS ALT2 TSL 1 (best) BASIC20.71■□□□□ 0.91
Col13a1Q9R1N9 Fam89b-202ENSMUST00000116558 1189 ntTSL 1 (best) BASIC20.71■□□□□ 0.91
Col13a1Q9R1N9 E130218I03Rik-204ENSMUST00000131447 888 ntAPPRIS P1 TSL 5 BASIC20.71■□□□□ 0.91
Col13a1Q9R1N9 C2cd4b-201ENSMUST00000171652 1327 ntAPPRIS P1 TSL 1 (best) BASIC20.71■□□□□ 0.91
Col13a1Q9R1N9 Prelid3b-201ENSMUST00000016401 1553 ntAPPRIS P1 TSL 1 (best) BASIC20.7■□□□□ 0.9
Col13a1Q9R1N9 Ythdf1-202ENSMUST00000108876 2272 ntTSL 1 (best) BASIC20.69■□□□□ 0.9
Col13a1Q9R1N9 Triobp-206ENSMUST00000130663 1660 ntAPPRIS ALT2 TSL 5 BASIC20.68■□□□□ 0.9
Col13a1Q9R1N9 Paip1-203ENSMUST00000126957 1731 ntTSL 5 BASIC20.68■□□□□ 0.9
Col13a1Q9R1N9 Tmem59-201ENSMUST00000030361 1775 ntAPPRIS P1 TSL 1 (best) BASIC20.68■□□□□ 0.9
Col13a1Q9R1N9 Ankrd60-202ENSMUST00000119453 1084 ntAPPRIS P2 TSL 2 BASIC20.68■□□□□ 0.9
Col13a1Q9R1N9 Gm13889-202ENSMUST00000148314 1240 ntAPPRIS P1 BASIC20.68■□□□□ 0.9
Col13a1Q9R1N9 Krtap28-13-201ENSMUST00000188005 992 ntAPPRIS P1 BASIC20.68■□□□□ 0.9
Col13a1Q9R1N9 Pard6a-201ENSMUST00000093195 1265 ntAPPRIS P3 TSL 1 (best) BASIC20.68■□□□□ 0.9
Col13a1Q9R1N9 Zswim6-201ENSMUST00000105097 5456 ntTSL 5 BASIC20.67■□□□□ 0.9
Col13a1Q9R1N9 Vegfb-202ENSMUST00000130048 1158 ntAPPRIS ALT2 TSL 1 (best) BASIC20.67■□□□□ 0.9
Col13a1Q9R1N9 Mrpl23-201ENSMUST00000038675 692 ntAPPRIS P2 TSL 1 (best) BASIC20.67■□□□□ 0.9
Col13a1Q9R1N9 Akt1s1-202ENSMUST00000107880 1757 ntAPPRIS P3 TSL 1 (best) BASIC20.66■□□□□ 0.9
Col13a1Q9R1N9 Amigo1-203ENSMUST00000106659 1360 ntTSL 1 (best) BASIC20.65■□□□□ 0.9
Col13a1Q9R1N9 Gltp-201ENSMUST00000012028 1762 ntAPPRIS P1 TSL 1 (best) BASIC20.64■□□□□ 0.9
Col13a1Q9R1N9 Ell2-205ENSMUST00000222194 434 ntTSL 3 BASIC20.64■□□□□ 0.89
Col13a1Q9R1N9 Reep6-203ENSMUST00000105355 2127 ntAPPRIS ALT2 TSL 1 (best) BASIC20.63■□□□□ 0.89
Retrieved 100 of 76,532 protein–RNA pairs in 44.8 ms