Protein–RNA interactions for Protein: Q9H6T3

RPAP3, RNA polymerase II-associated protein 3, humanhuman

Predicted RBP Predictions only

Length 665 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
RPAP3Q9H6T3 AC096888.1-201ENST00000487097 565 ntTSL 4 BASIC31.29■■■□□ 2.6
RPAP3Q9H6T3 ANGPTL6-204ENST00000592641 1781 ntAPPRIS P1 TSL 1 (best) BASIC31.29■■■□□ 2.6
RPAP3Q9H6T3 REPIN1-204ENST00000466559 1022 ntTSL 1 (best) BASIC31.27■■■□□ 2.6
RPAP3Q9H6T3 HS3ST6-201ENST00000454677 1273 ntAPPRIS P1 TSL 1 (best) BASIC31.26■■■□□ 2.59
RPAP3Q9H6T3 SLC9A3R2-202ENST00000432365 1564 ntTSL 1 (best) BASIC31.26■■■□□ 2.59
RPAP3Q9H6T3 RCE1-201ENST00000309657 1485 ntAPPRIS P1 TSL 1 (best) BASIC31.25■■■□□ 2.59
RPAP3Q9H6T3 STUB1-201ENST00000219548 1472 ntAPPRIS P1 TSL 1 (best) BASIC31.24■■■□□ 2.59
RPAP3Q9H6T3 GSC-201ENST00000238558 1264 ntAPPRIS P1 TSL 1 (best) BASIC31.23■■■□□ 2.59
RPAP3Q9H6T3 AC021231.2-201ENST00000594613 730 ntBASIC31.23■■■□□ 2.59
RPAP3Q9H6T3 CIB2-204ENST00000557846 934 ntTSL 3 BASIC31.22■■■□□ 2.59
RPAP3Q9H6T3 MIR6090-201ENST00000622481 60 ntBASIC31.22■■■□□ 2.59
RPAP3Q9H6T3 FMR1-219ENST00000621453 1864 ntTSL 1 (best) BASIC31.22■■■□□ 2.59
RPAP3Q9H6T3 AC105285.1-201ENST00000500914 2036 ntTSL 1 (best) BASIC31.2■■■□□ 2.59
RPAP3Q9H6T3 AP000547.3-202ENST00000592107 1019 ntTSL 1 (best) BASIC31.2■■■□□ 2.59
RPAP3Q9H6T3 GALK1-205ENST00000588479 1866 ntAPPRIS P1 TSL 1 (best) BASIC31.19■■■□□ 2.58
RPAP3Q9H6T3 CCDC149-203ENST00000502801 1079 ntTSL 1 (best) BASIC31.19■■■□□ 2.58
RPAP3Q9H6T3 AC108673.1-201ENST00000510422 1159 ntBASIC31.19■■■□□ 2.58
RPAP3Q9H6T3 AC116407.1-201ENST00000398832 1599 ntTSL 2 BASIC31.18■■■□□ 2.58
RPAP3Q9H6T3 CIB1-201ENST00000328649 1247 ntAPPRIS P1 TSL 1 (best) BASIC31.18■■■□□ 2.58
RPAP3Q9H6T3 CIB1-202ENST00000612800 1096 ntTSL 1 (best) BASIC31.18■■■□□ 2.58
RPAP3Q9H6T3 KCNQ5-204ENST00000370392 1469 ntTSL 1 (best) BASIC31.18■■■□□ 2.58
RPAP3Q9H6T3 AL139393.1-201ENST00000417479 573 ntTSL 5 BASIC31.17■■■□□ 2.58
RPAP3Q9H6T3 WNT5A-AS1-201ENST00000469484 500 ntTSL 3 BASIC31.17■■■□□ 2.58
RPAP3Q9H6T3 AC187653.1-201ENST00000506382 702 ntAPPRIS P1 TSL 5 BASIC31.16■■■□□ 2.58
RPAP3Q9H6T3 LAPTM4B-203ENST00000521545 915 ntAPPRIS P1 TSL 1 (best) BASIC31.16■■■□□ 2.58
RPAP3Q9H6T3 CAPNS1-211ENST00000590874 926 ntTSL 5 BASIC31.16■■■□□ 2.58
RPAP3Q9H6T3 AC120057.4-201ENST00000624722 1615 ntBASIC31.14■■■□□ 2.58
RPAP3Q9H6T3 SCX-201ENST00000567180 999 ntAPPRIS P1 TSL 1 (best) BASIC31.14■■■□□ 2.58
RPAP3Q9H6T3 UBE2S-203ENST00000589978 496 ntTSL 5 BASIC31.14■■■□□ 2.58
RPAP3Q9H6T3 AL451007.3-201ENST00000640271 588 ntAPPRIS P1 BASIC31.14■■■□□ 2.58
RPAP3Q9H6T3 MXD3-203ENST00000439742 1483 ntAPPRIS P1 TSL 1 (best) BASIC31.14■■■□□ 2.57
RPAP3Q9H6T3 MTCP1-202ENST00000369476 2274 ntAPPRIS P1 TSL 3 BASIC31.13■■■□□ 2.57
RPAP3Q9H6T3 AC013394.1-201ENST00000629685 808 ntAPPRIS P1 TSL 5 BASIC31.13■■■□□ 2.57
RPAP3Q9H6T3 RASSF7-202ENST00000397583 1928 ntAPPRIS P3 TSL 1 (best) BASIC31.12■■■□□ 2.57
RPAP3Q9H6T3 HINT2-201ENST00000259667 628 ntAPPRIS P1 TSL 1 (best) BASIC31.11■■■□□ 2.57
RPAP3Q9H6T3 MISP3-202ENST00000587086 1535 ntAPPRIS P2 TSL 1 (best) BASIC31.11■■■□□ 2.57
RPAP3Q9H6T3 UBE2A-207ENST00000628549 934 ntTSL 2 BASIC31.11■■■□□ 2.57
RPAP3Q9H6T3 AGPAT2-202ENST00000371696 1512 ntAPPRIS P1 TSL 1 (best) BASIC31.1■■■□□ 2.57
RPAP3Q9H6T3 DNLZ-201ENST00000371738 724 ntAPPRIS P1 TSL 1 (best) BASIC31.1■■■□□ 2.57
RPAP3Q9H6T3 RP9P-201ENST00000381639 1303 ntTSL 1 (best) BASIC31.09■■■□□ 2.57
RPAP3Q9H6T3 DOCK5-202ENST00000410074 786 ntTSL 2 BASIC31.09■■■□□ 2.57
RPAP3Q9H6T3 SIAH1-203ENST00000394725 2147 ntAPPRIS P3 TSL 1 (best) BASIC31.09■■■□□ 2.57
RPAP3Q9H6T3 TRNP1-201ENST00000522111 1958 ntAPPRIS P2 TSL 1 (best) BASIC31.08■■■□□ 2.57
RPAP3Q9H6T3 ECI1-207ENST00000570258 1512 ntAPPRIS ALT2 TSL 5 BASIC31.07■■■□□ 2.56
RPAP3Q9H6T3 ACOT12-204ENST00000513751 612 ntTSL 1 (best) BASIC31.05■■■□□ 2.56
RPAP3Q9H6T3 PCYT2-206ENST00000571105 1628 ntTSL 5 BASIC31.05■■■□□ 2.56
RPAP3Q9H6T3 OLFM2-201ENST00000264833 2019 ntAPPRIS P1 TSL 1 (best) BASIC31.05■■■□□ 2.56
RPAP3Q9H6T3 ARL8A-204ENST00000614750 1727 ntTSL 3 BASIC31.04■■■□□ 2.56
RPAP3Q9H6T3 ZBTB12-201ENST00000375527 1875 ntAPPRIS P1 TSL 1 (best) BASIC31.04■■■□□ 2.56
RPAP3Q9H6T3 POLR1D-201ENST00000302979 1166 ntAPPRIS P2 TSL 1 (best) BASIC31.03■■■□□ 2.56
RPAP3Q9H6T3 RPS2-202ENST00000526522 924 ntTSL 2 BASIC31.02■■■□□ 2.56
RPAP3Q9H6T3 DDN-AS1-203ENST00000552284 934 ntTSL 3 BASIC31.02■■■□□ 2.56
RPAP3Q9H6T3 HNRNPAB-206ENST00000506339 1747 ntAPPRIS ALT2 TSL 5 BASIC31.01■■■□□ 2.55
RPAP3Q9H6T3 NIT1-201ENST00000368007 1749 ntTSL 2 BASIC31■■■□□ 2.55
RPAP3Q9H6T3 DTNBP1-202ENST00000344537 1403 ntAPPRIS P1 TSL 1 (best) BASIC30.99■■■□□ 2.55
RPAP3Q9H6T3 TSPAN11-203ENST00000545802 1649 ntTSL 1 (best) BASIC30.99■■■□□ 2.55
RPAP3Q9H6T3 MRPL9-201ENST00000368829 882 ntAPPRIS ALT2 TSL 2 BASIC30.99■■■□□ 2.55
RPAP3Q9H6T3 AL589765.4-201ENST00000512280 382 ntTSL 3 BASIC30.99■■■□□ 2.55
RPAP3Q9H6T3 KLC2-205ENST00000394078 1557 ntTSL 5 BASIC30.98■■■□□ 2.55
RPAP3Q9H6T3 CCM2-201ENST00000258781 1894 ntAPPRIS P3 TSL 1 (best) BASIC30.97■■■□□ 2.55
RPAP3Q9H6T3 BTBD19-203ENST00000450269 1572 ntAPPRIS P1 TSL 5 BASIC30.96■■■□□ 2.55
RPAP3Q9H6T3 ATP6V1E2-204ENST00000522587 1559 ntAPPRIS P1 TSL 3 BASIC30.96■■■□□ 2.55
RPAP3Q9H6T3 SULT4A1-201ENST00000330884 2468 ntAPPRIS P1 TSL 1 (best) BASIC30.95■■■□□ 2.55
RPAP3Q9H6T3 MACF1-219ENST00000484793 834 ntTSL 2 BASIC30.95■■■□□ 2.55
RPAP3Q9H6T3 PRSS41-201ENST00000399677 1127 ntAPPRIS P1 TSL 5 BASIC30.94■■■□□ 2.54
RPAP3Q9H6T3 RNF166-209ENST00000567844 633 ntTSL 5 BASIC30.94■■■□□ 2.54
RPAP3Q9H6T3 FTCD-202ENST00000397743 1834 ntTSL 1 (best) BASIC30.94■■■□□ 2.54
RPAP3Q9H6T3 PLEKHJ1-201ENST00000326631 1206 ntAPPRIS P1 TSL 1 (best) BASIC30.92■■■□□ 2.54
RPAP3Q9H6T3 VEGFA-226ENST00000611736 1239 ntTSL 1 (best) BASIC30.92■■■□□ 2.54
RPAP3Q9H6T3 NOXA1-201ENST00000341349 1678 ntAPPRIS P1 TSL 1 (best) BASIC30.91■■■□□ 2.54
RPAP3Q9H6T3 MSRB2-201ENST00000376510 1803 ntAPPRIS P1 TSL 1 (best) BASIC30.91■■■□□ 2.54
RPAP3Q9H6T3 PIK3R2-208ENST00000617642 1446 ntTSL 5 BASIC30.9■■■□□ 2.54
RPAP3Q9H6T3 CHPT1-201ENST00000229266 1585 ntAPPRIS P2 TSL 1 (best) BASIC30.88■■■□□ 2.53
RPAP3Q9H6T3 AL118558.1-203ENST00000553701 447 ntTSL 3 BASIC30.88■■■□□ 2.53
RPAP3Q9H6T3 RPS2-201ENST00000343262 985 ntAPPRIS P1 TSL 1 (best) BASIC30.87■■■□□ 2.53
RPAP3Q9H6T3 MIR639-201ENST00000384974 98 ntBASIC30.87■■■□□ 2.53
RPAP3Q9H6T3 MIR3648-2-201ENST00000581792 180 ntBASIC30.87■■■□□ 2.53
RPAP3Q9H6T3 MIR3648-1-201ENST00000615959 180 ntBASIC30.87■■■□□ 2.53
RPAP3Q9H6T3 LINC01971-201ENST00000617888 1048 ntBASIC30.87■■■□□ 2.53
RPAP3Q9H6T3 CSPG5-205ENST00000610462 2073 ntTSL 5 BASIC30.86■■■□□ 2.53
RPAP3Q9H6T3 NREP-216ENST00000508870 540 ntAPPRIS P1 TSL 4 BASIC30.86■■■□□ 2.53
RPAP3Q9H6T3 U2AF1L5-201ENST00000610664 897 ntAPPRIS P5 TSL 1 (best) BASIC30.86■■■□□ 2.53
RPAP3Q9H6T3 DUX4L11-201ENST00000611504 1267 ntBASIC30.86■■■□□ 2.53
RPAP3Q9H6T3 DUX4L12-201ENST00000614593 1267 ntBASIC30.86■■■□□ 2.53
RPAP3Q9H6T3 DUX4L14-201ENST00000621227 1267 ntBASIC30.86■■■□□ 2.53
RPAP3Q9H6T3 MIR4449-201ENST00000578365 66 ntBASIC30.85■■■□□ 2.53
RPAP3Q9H6T3 AC016575.1-201ENST00000607026 382 ntBASIC30.85■■■□□ 2.53
RPAP3Q9H6T3 GDI1-215ENST00000630693 786 ntTSL 4 BASIC30.85■■■□□ 2.53
RPAP3Q9H6T3 BCL7B-201ENST00000223368 1975 ntAPPRIS P1 TSL 1 (best) BASIC30.85■■■□□ 2.53
RPAP3Q9H6T3 ABHD12-201ENST00000339157 2117 ntAPPRIS P1 TSL 2 BASIC30.83■■■□□ 2.53
RPAP3Q9H6T3 CLEC3B-202ENST00000428034 752 ntTSL 2 BASIC30.83■■■□□ 2.53
RPAP3Q9H6T3 TMEM229A-201ENST00000455783 2108 ntAPPRIS P1 BASIC30.83■■■□□ 2.53
RPAP3Q9H6T3 KRT18-201ENST00000388835 1562 ntAPPRIS P1 TSL 1 (best) BASIC30.82■■■□□ 2.52
RPAP3Q9H6T3 NOG-201ENST00000332822 1892 ntAPPRIS P1 BASIC30.82■■■□□ 2.52
RPAP3Q9H6T3 CISD3-204ENST00000613478 2074 ntAPPRIS P1 TSL 2 BASIC30.81■■■□□ 2.52
RPAP3Q9H6T3 GATA6-202ENST00000581694 2057 ntAPPRIS P1 TSL 1 (best) BASIC30.8■■■□□ 2.52
RPAP3Q9H6T3 CNIH2-203ENST00000528852 1524 ntAPPRIS ALT1 TSL 1 (best) BASIC30.8■■■□□ 2.52
RPAP3Q9H6T3 CR559946.2-201ENST00000623684 991 ntBASIC30.8■■■□□ 2.52
RPAP3Q9H6T3 MYLIP-202ENST00000356840 1666 ntAPPRIS P1 TSL 1 (best) BASIC30.8■■■□□ 2.52
RPAP3Q9H6T3 NPTXR-202ENST00000640136 1503 ntAPPRIS P2 TSL 1 (best) BASIC30.79■■■□□ 2.52
Retrieved 100 of 98,524 protein–RNA pairs in 14.4 ms