Protein–RNA interactions for Protein: Q9H400

LIME1, Lck-interacting transmembrane adapter 1, humanhuman

Predictions only

Length 295 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
LIME1Q9H400 NAA50-207ENST00000493900 962 ntAPPRIS ALT1 TSL 2 BASIC23.5■■□□□ 1.35
LIME1Q9H400 ACOT12-204ENST00000513751 612 ntTSL 1 (best) BASIC23.5■■□□□ 1.35
LIME1Q9H400 LANCL3-203ENST00000614025 1469 ntTSL 2 BASIC23.49■■□□□ 1.35
LIME1Q9H400 RAMP2-AS1-202ENST00000589716 1985 ntTSL 5 BASIC23.49■■□□□ 1.35
LIME1Q9H400 SLC35D2-202ENST00000375257 889 ntTSL 2 BASIC23.49■■□□□ 1.35
LIME1Q9H400 AC096888.1-201ENST00000487097 565 ntTSL 4 BASIC23.49■■□□□ 1.35
LIME1Q9H400 CCM2-201ENST00000258781 1894 ntAPPRIS P3 TSL 1 (best) BASIC23.48■■□□□ 1.35
LIME1Q9H400 HDAC11-206ENST00000405025 576 ntTSL 4 BASIC23.48■■□□□ 1.35
LIME1Q9H400 VEGFA-231ENST00000640499 1188 ntAPPRIS P3 TSL 1 (best) BASIC23.48■■□□□ 1.35
LIME1Q9H400 TSEN34-203ENST00000396388 1349 ntAPPRIS P1 TSL 1 (best) BASIC23.48■■□□□ 1.35
LIME1Q9H400 SHC2-201ENST00000264554 2494 ntAPPRIS P1 TSL 1 (best) BASIC23.48■■□□□ 1.35
LIME1Q9H400 TRIOBP-205ENST00000407319 2125 ntAPPRIS P3 TSL 1 (best) BASIC23.47■■□□□ 1.35
LIME1Q9H400 RDX-206ENST00000528900 1814 ntTSL 1 (best) BASIC23.47■■□□□ 1.35
LIME1Q9H400 RPS2-201ENST00000343262 985 ntAPPRIS P1 TSL 1 (best) BASIC23.46■■□□□ 1.35
LIME1Q9H400 REPIN1-204ENST00000466559 1022 ntTSL 1 (best) BASIC23.46■■□□□ 1.35
LIME1Q9H400 AC013394.1-201ENST00000629685 808 ntAPPRIS P1 TSL 5 BASIC23.46■■□□□ 1.35
LIME1Q9H400 AL451007.3-201ENST00000640271 588 ntAPPRIS P1 BASIC23.44■■□□□ 1.34
LIME1Q9H400 FOXD3-201ENST00000371116 2086 ntAPPRIS P1 BASIC23.44■■□□□ 1.34
LIME1Q9H400 VAX2-201ENST00000234392 1147 ntAPPRIS P1 TSL 1 (best) BASIC23.43■■□□□ 1.34
LIME1Q9H400 PPP1R14B-201ENST00000309318 982 ntAPPRIS P1 TSL 1 (best) BASIC23.43■■□□□ 1.34
LIME1Q9H400 WASH5P-204ENST00000632292 975 ntBASIC23.43■■□□□ 1.34
LIME1Q9H400 MAF-201ENST00000326043 2646 ntAPPRIS P3 TSL 1 (best) BASIC23.43■■□□□ 1.34
LIME1Q9H400 TMEM229A-201ENST00000455783 2108 ntAPPRIS P1 BASIC23.41■■□□□ 1.34
LIME1Q9H400 MFAP2-202ENST00000375535 1260 ntTSL 1 (best) BASIC23.41■■□□□ 1.34
LIME1Q9H400 DUX4L29-201ENST00000425409 679 ntBASIC23.41■■□□□ 1.34
LIME1Q9H400 LAPTM4B-203ENST00000521545 915 ntAPPRIS P1 TSL 1 (best) BASIC23.41■■□□□ 1.34
LIME1Q9H400 RPS2-209ENST00000529806 993 ntTSL 3 BASIC23.4■■□□□ 1.34
LIME1Q9H400 PCSK6-201ENST00000331826 2309 ntTSL 5 BASIC23.4■■□□□ 1.34
LIME1Q9H400 KCNK3-202ENST00000620977 1956 ntTSL 1 (best) BASIC23.4■■□□□ 1.34
LIME1Q9H400 LRRC10B-201ENST00000378075 2219 ntAPPRIS P1 BASIC23.39■■□□□ 1.33
LIME1Q9H400 SSU72-201ENST00000291386 1290 ntAPPRIS P1 TSL 1 (best) BASIC23.38■■□□□ 1.33
LIME1Q9H400 ACTG1-210ENST00000575842 2256 ntAPPRIS P1 TSL 1 (best) BASIC23.38■■□□□ 1.33
LIME1Q9H400 GSC-201ENST00000238558 1264 ntAPPRIS P1 TSL 1 (best) BASIC23.36■■□□□ 1.33
LIME1Q9H400 PSMG4-202ENST00000380305 489 ntTSL 5 BASIC23.36■■□□□ 1.33
LIME1Q9H400 MIR4449-201ENST00000578365 66 ntBASIC23.36■■□□□ 1.33
LIME1Q9H400 AC116407.1-201ENST00000398832 1599 ntTSL 2 BASIC23.35■■□□□ 1.33
LIME1Q9H400 VPS37D-201ENST00000324941 1624 ntAPPRIS P1 TSL 1 (best) BASIC23.35■■□□□ 1.33
LIME1Q9H400 ATRNL1-209ENST00000609571 1818 ntTSL 1 (best) BASIC23.35■■□□□ 1.33
LIME1Q9H400 NRXN1-228ENST00000628364 2444 ntTSL 5 BASIC23.34■■□□□ 1.33
LIME1Q9H400 MPST-201ENST00000341116 1504 ntAPPRIS P1 TSL 5 BASIC23.34■■□□□ 1.33
LIME1Q9H400 GSTP1-202ENST00000398606 965 ntAPPRIS P1 TSL 1 (best) BASIC23.34■■□□□ 1.33
LIME1Q9H400 DBP-205ENST00000601104 1489 ntTSL 1 (best) BASIC23.34■■□□□ 1.33
LIME1Q9H400 MAD2L2-205ENST00000376669 864 ntTSL 3 BASIC23.33■■□□□ 1.33
LIME1Q9H400 NMB-202ENST00000394588 1017 ntTSL 1 (best) BASIC23.33■■□□□ 1.33
LIME1Q9H400 AC021231.2-201ENST00000594613 730 ntBASIC23.33■■□□□ 1.33
LIME1Q9H400 GGA1-204ENST00000381756 2107 ntTSL 1 (best) BASIC23.33■■□□□ 1.32
LIME1Q9H400 ADRA2C-202ENST00000509482 1600 ntTSL 3 BASIC23.33■■□□□ 1.32
LIME1Q9H400 ANGPTL6-204ENST00000592641 1781 ntAPPRIS P1 TSL 1 (best) BASIC23.32■■□□□ 1.32
LIME1Q9H400 RNF215-203ENST00000382363 1992 ntAPPRIS P2 TSL 1 (best) BASIC23.31■■□□□ 1.32
LIME1Q9H400 MIR639-201ENST00000384974 98 ntBASIC23.31■■□□□ 1.32
LIME1Q9H400 DUSP14-206ENST00000617516 1537 ntAPPRIS P1 TSL 1 (best) BASIC23.3■■□□□ 1.32
LIME1Q9H400 TERF2-207ENST00000567296 1129 ntTSL 1 (best) BASIC23.3■■□□□ 1.32
LIME1Q9H400 GTF3C4-202ENST00000483873 1417 ntTSL 3 BASIC23.3■■□□□ 1.32
LIME1Q9H400 CCDC149-203ENST00000502801 1079 ntTSL 1 (best) BASIC23.29■■□□□ 1.32
LIME1Q9H400 AL118558.1-203ENST00000553701 447 ntTSL 3 BASIC23.29■■□□□ 1.32
LIME1Q9H400 HSD11B1L-209ENST00000577917 1553 ntTSL 1 (best) BASIC23.28■■□□□ 1.32
LIME1Q9H400 MNX1-207ENST00000543409 1620 ntAPPRIS ALT2 TSL 1 (best) BASIC23.28■■□□□ 1.32
LIME1Q9H400 PHF23-201ENST00000320316 2037 ntAPPRIS P1 TSL 1 (best) BASIC23.28■■□□□ 1.32
LIME1Q9H400 BRF1-221ENST00000619151 1530 ntTSL 5 BASIC23.28■■□□□ 1.32
LIME1Q9H400 SMARCD3-201ENST00000262188 1993 ntAPPRIS P1 TSL 1 (best) BASIC23.27■■□□□ 1.32
LIME1Q9H400 ATRAID-201ENST00000380171 1240 ntTSL 1 (best) BASIC23.27■■□□□ 1.32
LIME1Q9H400 TRAPPC10-202ENST00000380221 1763 ntTSL 1 (best) BASIC23.27■■□□□ 1.32
LIME1Q9H400 CACNG6-201ENST00000252729 1853 ntAPPRIS P1 TSL 1 (best) BASIC23.26■■□□□ 1.31
LIME1Q9H400 AGAP3-211ENST00000473312 2039 ntTSL 1 (best) BASIC23.25■■□□□ 1.31
LIME1Q9H400 CHMP4B-201ENST00000217402 1646 ntAPPRIS P1 TSL 1 (best) BASIC23.25■■□□□ 1.31
LIME1Q9H400 BCL7B-201ENST00000223368 1975 ntAPPRIS P1 TSL 1 (best) BASIC23.24■■□□□ 1.31
LIME1Q9H400 CIB2-204ENST00000557846 934 ntTSL 3 BASIC23.24■■□□□ 1.31
LIME1Q9H400 GATA6-202ENST00000581694 2057 ntAPPRIS P1 TSL 1 (best) BASIC23.23■■□□□ 1.31
LIME1Q9H400 AC016575.1-201ENST00000607026 382 ntBASIC23.23■■□□□ 1.31
LIME1Q9H400 FTCD-203ENST00000397746 1878 ntAPPRIS P1 TSL 1 (best) BASIC23.23■■□□□ 1.31
LIME1Q9H400 KRT18-201ENST00000388835 1562 ntAPPRIS P1 TSL 1 (best) BASIC23.23■■□□□ 1.31
LIME1Q9H400 KHDRBS3-201ENST00000355849 1977 ntAPPRIS P1 TSL 1 (best) BASIC23.22■■□□□ 1.31
LIME1Q9H400 MACF1-219ENST00000484793 834 ntTSL 2 BASIC23.22■■□□□ 1.31
LIME1Q9H400 MBOAT7-202ENST00000338624 2076 ntTSL 2 BASIC23.21■■□□□ 1.31
LIME1Q9H400 PI4KAP2-202ENST00000450651 2294 ntTSL 5 BASIC23.21■■□□□ 1.31
LIME1Q9H400 RNF166-209ENST00000567844 633 ntTSL 5 BASIC23.21■■□□□ 1.31
LIME1Q9H400 MIR3648-2-201ENST00000581792 180 ntBASIC23.2■■□□□ 1.3
LIME1Q9H400 MIR3648-1-201ENST00000615959 180 ntBASIC23.2■■□□□ 1.3
LIME1Q9H400 SNX24-201ENST00000261369 2158 ntAPPRIS P1 TSL 1 (best) BASIC23.19■■□□□ 1.3
LIME1Q9H400 CENPV-201ENST00000299736 1165 ntAPPRIS P1 TSL 1 (best) BASIC23.19■■□□□ 1.3
LIME1Q9H400 DDN-AS1-203ENST00000552284 934 ntTSL 3 BASIC23.19■■□□□ 1.3
LIME1Q9H400 GDI1-215ENST00000630693 786 ntTSL 4 BASIC23.19■■□□□ 1.3
LIME1Q9H400 JUND-201ENST00000252818 1863 ntAPPRIS P1 BASIC23.19■■□□□ 1.3
LIME1Q9H400 RP9-201ENST00000297157 1121 ntAPPRIS P2 TSL 1 (best) BASIC23.18■■□□□ 1.3
LIME1Q9H400 GRPEL2-204ENST00000513661 546 ntTSL 2 BASIC23.18■■□□□ 1.3
LIME1Q9H400 CALM3-209ENST00000597743 577 ntTSL 4 BASIC23.18■■□□□ 1.3
LIME1Q9H400 RCE1-201ENST00000309657 1485 ntAPPRIS P1 TSL 1 (best) BASIC23.17■■□□□ 1.3
LIME1Q9H400 GLTP-201ENST00000318348 2356 ntAPPRIS P1 TSL 1 (best) BASIC23.17■■□□□ 1.3
LIME1Q9H400 HINT2-201ENST00000259667 628 ntAPPRIS P1 TSL 1 (best) BASIC23.17■■□□□ 1.3
LIME1Q9H400 HSD17B1P1-201ENST00000590052 955 ntBASIC23.17■■□□□ 1.3
LIME1Q9H400 RP9P-201ENST00000381639 1303 ntTSL 1 (best) BASIC23.16■■□□□ 1.3
LIME1Q9H400 TXNL4A-210ENST00000591711 669 ntTSL 2 BASIC23.16■■□□□ 1.3
LIME1Q9H400 MIR6090-201ENST00000622481 60 ntBASIC23.16■■□□□ 1.3
LIME1Q9H400 CRIP1-201ENST00000330233 1311 ntAPPRIS P1 TSL 1 (best) BASIC23.15■■□□□ 1.3
LIME1Q9H400 NIT1-201ENST00000368007 1749 ntTSL 2 BASIC23.15■■□□□ 1.3
LIME1Q9H400 ELK4-201ENST00000289703 2118 ntTSL 1 (best) BASIC23.15■■□□□ 1.3
LIME1Q9H400 DNLZ-201ENST00000371738 724 ntAPPRIS P1 TSL 1 (best) BASIC23.14■■□□□ 1.29
LIME1Q9H400 RBPMS-209ENST00000520161 842 ntTSL 2 BASIC23.14■■□□□ 1.29
LIME1Q9H400 RNF150-204ENST00000507500 1530 ntTSL 1 (best) BASIC23.13■■□□□ 1.29
LIME1Q9H400 CGREF1-202ENST00000312734 1610 ntAPPRIS P2 TSL 5 BASIC23.13■■□□□ 1.29
Retrieved 100 of 98,524 protein–RNA pairs in 8.4 ms