Protein–RNA interactions for Protein: Q9BRR0

ZKSCAN3, Zinc finger protein with KRAB and SCAN domains 3, humanhuman

Predictions only

Length 538 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
ZKSCAN3Q9BRR0 RPS2P35-201ENST00000443417 897 ntBASIC31.51■■■□□ 2.63
ZKSCAN3Q9BRR0 MSANTD2-203ENST00000524950 1109 ntTSL 2 BASIC31.51■■■□□ 2.63
ZKSCAN3Q9BRR0 AC005559.1-201ENST00000589661 871 ntBASIC31.5■■■□□ 2.63
ZKSCAN3Q9BRR0 DUX4L28-201ENST00000623687 678 ntBASIC31.5■■■□□ 2.63
ZKSCAN3Q9BRR0 TAZ-215ENST00000612460 1793 ntAPPRIS P1 TSL 1 (best) BASIC31.5■■■□□ 2.63
ZKSCAN3Q9BRR0 GNAI2-202ENST00000313601 2464 ntAPPRIS P1 TSL 1 (best) BASIC31.5■■■□□ 2.63
ZKSCAN3Q9BRR0 CRIP1-201ENST00000330233 1311 ntAPPRIS P1 TSL 1 (best) BASIC31.49■■■□□ 2.63
ZKSCAN3Q9BRR0 FAM89B-201ENST00000316409 1409 ntTSL 1 (best) BASIC31.49■■■□□ 2.63
ZKSCAN3Q9BRR0 COL13A1-212ENST00000520133 1833 ntTSL 5 BASIC31.49■■■□□ 2.63
ZKSCAN3Q9BRR0 CBX4-201ENST00000269397 2664 ntAPPRIS P2 TSL 1 (best) BASIC31.48■■■□□ 2.63
ZKSCAN3Q9BRR0 FADS3-201ENST00000278829 1779 ntAPPRIS P1 TSL 1 (best) BASIC31.48■■■□□ 2.63
ZKSCAN3Q9BRR0 HOXB3-210ENST00000489475 1845 ntTSL 2 BASIC31.47■■■□□ 2.63
ZKSCAN3Q9BRR0 SEPT3-203ENST00000396426 2586 ntAPPRIS P4 TSL 1 (best) BASIC31.47■■■□□ 2.63
ZKSCAN3Q9BRR0 PGAM5-201ENST00000317555 1182 ntTSL 1 (best) BASIC31.47■■■□□ 2.63
ZKSCAN3Q9BRR0 AP006261.1-201ENST00000584783 668 ntBASIC31.47■■■□□ 2.63
ZKSCAN3Q9BRR0 LANCL3-203ENST00000614025 1469 ntTSL 2 BASIC31.46■■■□□ 2.63
ZKSCAN3Q9BRR0 ST7-205ENST00000393446 2114 ntTSL 5 BASIC31.46■■■□□ 2.63
ZKSCAN3Q9BRR0 HES7-202ENST00000541682 1674 ntAPPRIS ALT1 TSL 1 (best) BASIC31.46■■■□□ 2.63
ZKSCAN3Q9BRR0 NMB-202ENST00000394588 1017 ntTSL 1 (best) BASIC31.45■■■□□ 2.63
ZKSCAN3Q9BRR0 STUB1-201ENST00000219548 1472 ntAPPRIS P1 TSL 1 (best) BASIC31.45■■■□□ 2.62
ZKSCAN3Q9BRR0 AGPAT2-202ENST00000371696 1512 ntAPPRIS P1 TSL 1 (best) BASIC31.44■■■□□ 2.62
ZKSCAN3Q9BRR0 TXNRD2-204ENST00000400521 2115 ntAPPRIS P2 TSL 1 (best) BASIC31.44■■■□□ 2.62
ZKSCAN3Q9BRR0 GLRX5-201ENST00000331334 1564 ntAPPRIS P1 TSL 1 (best) BASIC31.43■■■□□ 2.62
ZKSCAN3Q9BRR0 MBOAT7-203ENST00000391754 1797 ntTSL 1 (best) BASIC31.43■■■□□ 2.62
ZKSCAN3Q9BRR0 FAM185A-202ENST00000413034 1179 ntAPPRIS P4 TSL 5 BASIC31.43■■■□□ 2.62
ZKSCAN3Q9BRR0 MBOAT7-202ENST00000338624 2076 ntTSL 2 BASIC31.43■■■□□ 2.62
ZKSCAN3Q9BRR0 HMX1-201ENST00000400677 1895 ntAPPRIS P1 TSL 1 (best) BASIC31.42■■■□□ 2.62
ZKSCAN3Q9BRR0 MIR3665-201ENST00000578708 105 ntBASIC31.41■■■□□ 2.62
ZKSCAN3Q9BRR0 JMJD8-216ENST00000609261 1901 ntAPPRIS ALT2 TSL 1 (best) BASIC31.41■■■□□ 2.62
ZKSCAN3Q9BRR0 RAMP2-AS1-202ENST00000589716 1985 ntTSL 5 BASIC31.4■■■□□ 2.62
ZKSCAN3Q9BRR0 MNX1-207ENST00000543409 1620 ntAPPRIS ALT2 TSL 1 (best) BASIC31.4■■■□□ 2.62
ZKSCAN3Q9BRR0 AVEN-201ENST00000306730 1605 ntAPPRIS P1 TSL 1 (best) BASIC31.38■■■□□ 2.61
ZKSCAN3Q9BRR0 GUSB-202ENST00000421103 1742 ntTSL 2 BASIC31.38■■■□□ 2.61
ZKSCAN3Q9BRR0 PHF23-201ENST00000320316 2037 ntAPPRIS P1 TSL 1 (best) BASIC31.36■■■□□ 2.61
ZKSCAN3Q9BRR0 PARD6A-202ENST00000458121 1260 ntAPPRIS ALT1 TSL 1 (best) BASIC31.36■■■□□ 2.61
ZKSCAN3Q9BRR0 AGAP3-211ENST00000473312 2039 ntTSL 1 (best) BASIC31.36■■■□□ 2.61
ZKSCAN3Q9BRR0 TSEN34-203ENST00000396388 1349 ntAPPRIS P1 TSL 1 (best) BASIC31.35■■■□□ 2.61
ZKSCAN3Q9BRR0 COX4I1-203ENST00000562336 873 ntAPPRIS P1 TSL 5 BASIC31.35■■■□□ 2.61
ZKSCAN3Q9BRR0 NKIRAS2-202ENST00000316082 833 ntTSL 5 BASIC31.34■■■□□ 2.61
ZKSCAN3Q9BRR0 HOXD8-201ENST00000313173 1917 ntAPPRIS P3 TSL 2 BASIC31.33■■■□□ 2.61
ZKSCAN3Q9BRR0 AC087741.3-201ENST00000624270 1347 ntBASIC31.32■■■□□ 2.6
ZKSCAN3Q9BRR0 NOG-201ENST00000332822 1892 ntAPPRIS P1 BASIC31.32■■■□□ 2.6
ZKSCAN3Q9BRR0 XKR6-201ENST00000297303 1550 ntTSL 1 (best) BASIC31.32■■■□□ 2.6
ZKSCAN3Q9BRR0 AC012615.2-201ENST00000586259 447 ntTSL 4 BASIC31.31■■■□□ 2.6
ZKSCAN3Q9BRR0 LRRC61-202ENST00000359623 1877 ntAPPRIS P1 TSL 2 BASIC31.31■■■□□ 2.6
ZKSCAN3Q9BRR0 CHPT1-205ENST00000549872 2001 ntAPPRIS ALT2 TSL 5 BASIC31.31■■■□□ 2.6
ZKSCAN3Q9BRR0 ST7-202ENST00000323984 2142 ntTSL 5 BASIC31.3■■■□□ 2.6
ZKSCAN3Q9BRR0 ST7-207ENST00000393449 2127 ntTSL 5 BASIC31.3■■■□□ 2.6
ZKSCAN3Q9BRR0 PPP1R35-201ENST00000292330 1031 ntAPPRIS P1 TSL 1 (best) BASIC31.3■■■□□ 2.6
ZKSCAN3Q9BRR0 CIB1-201ENST00000328649 1247 ntAPPRIS P1 TSL 1 (best) BASIC31.3■■■□□ 2.6
ZKSCAN3Q9BRR0 RPS2-209ENST00000529806 993 ntTSL 3 BASIC31.3■■■□□ 2.6
ZKSCAN3Q9BRR0 CIB1-202ENST00000612800 1096 ntTSL 1 (best) BASIC31.3■■■□□ 2.6
ZKSCAN3Q9BRR0 GLRB-203ENST00000509282 1757 ntAPPRIS P1 TSL 1 (best) BASIC31.3■■■□□ 2.6
ZKSCAN3Q9BRR0 TRIOBP-205ENST00000407319 2125 ntAPPRIS P3 TSL 1 (best) BASIC31.29■■■□□ 2.6
ZKSCAN3Q9BRR0 NPTXR-202ENST00000640136 1503 ntAPPRIS P2 TSL 1 (best) BASIC31.29■■■□□ 2.6
ZKSCAN3Q9BRR0 GTF3C4-202ENST00000483873 1417 ntTSL 3 BASIC31.27■■■□□ 2.6
ZKSCAN3Q9BRR0 FSD1L-204ENST00000469022 1836 ntTSL 1 (best) BASIC31.27■■■□□ 2.6
ZKSCAN3Q9BRR0 AC104109.3-201ENST00000519718 483 ntAPPRIS P1 TSL 5 BASIC31.27■■■□□ 2.6
ZKSCAN3Q9BRR0 PGM5-201ENST00000396392 1782 ntTSL 1 (best) BASIC31.26■■■□□ 2.59
ZKSCAN3Q9BRR0 GKAP1-203ENST00000376371 1778 ntAPPRIS P1 TSL 1 (best) BASIC31.25■■■□□ 2.59
ZKSCAN3Q9BRR0 AL139393.1-201ENST00000417479 573 ntTSL 5 BASIC31.25■■■□□ 2.59
ZKSCAN3Q9BRR0 NAA50-207ENST00000493900 962 ntAPPRIS ALT1 TSL 2 BASIC31.25■■■□□ 2.59
ZKSCAN3Q9BRR0 TERF2-207ENST00000567296 1129 ntTSL 1 (best) BASIC31.25■■■□□ 2.59
ZKSCAN3Q9BRR0 PSMG4-202ENST00000380305 489 ntTSL 5 BASIC31.24■■■□□ 2.59
ZKSCAN3Q9BRR0 ARMC10-211ENST00000541300 2266 ntTSL 1 (best) BASIC31.24■■■□□ 2.59
ZKSCAN3Q9BRR0 NOP53-201ENST00000246802 1528 ntAPPRIS P1 TSL 1 (best) BASIC31.24■■■□□ 2.59
ZKSCAN3Q9BRR0 PIK3R2-208ENST00000617642 1446 ntTSL 5 BASIC31.24■■■□□ 2.59
ZKSCAN3Q9BRR0 SMIM12-205ENST00000456842 918 ntAPPRIS P1 TSL 2 BASIC31.23■■■□□ 2.59
ZKSCAN3Q9BRR0 BTBD19-203ENST00000450269 1572 ntAPPRIS P1 TSL 5 BASIC31.22■■■□□ 2.59
ZKSCAN3Q9BRR0 TPRA1-201ENST00000296210 1725 ntTSL 1 (best) BASIC31.21■■■□□ 2.59
ZKSCAN3Q9BRR0 TCEA2-202ENST00000343484 1235 ntAPPRIS P1 TSL 1 (best) BASIC31.21■■■□□ 2.59
ZKSCAN3Q9BRR0 ANGPTL6-201ENST00000253109 1900 ntAPPRIS P1 TSL 1 (best) BASIC31.21■■■□□ 2.59
ZKSCAN3Q9BRR0 GXYLT1-201ENST00000280876 1937 ntAPPRIS ALT2 TSL 1 (best) BASIC31.2■■■□□ 2.59
ZKSCAN3Q9BRR0 PPP1R14B-201ENST00000309318 982 ntAPPRIS P1 TSL 1 (best) BASIC31.2■■■□□ 2.59
ZKSCAN3Q9BRR0 AP000911.1-206ENST00000531938 711 ntTSL 3 BASIC31.2■■■□□ 2.59
ZKSCAN3Q9BRR0 MAD2L2-205ENST00000376669 864 ntTSL 3 BASIC31.19■■■□□ 2.58
ZKSCAN3Q9BRR0 RAB26-201ENST00000210187 1675 ntAPPRIS P1 TSL 1 (best) BASIC31.19■■■□□ 2.58
ZKSCAN3Q9BRR0 ATP6V1E2-204ENST00000522587 1559 ntAPPRIS P1 TSL 3 BASIC31.18■■■□□ 2.58
ZKSCAN3Q9BRR0 NOXA1-201ENST00000341349 1678 ntAPPRIS P1 TSL 1 (best) BASIC31.18■■■□□ 2.58
ZKSCAN3Q9BRR0 CMC4-202ENST00000369484 1107 ntAPPRIS P1 TSL 1 (best) BASIC31.17■■■□□ 2.58
ZKSCAN3Q9BRR0 RCE1-201ENST00000309657 1485 ntAPPRIS P1 TSL 1 (best) BASIC31.15■■■□□ 2.58
ZKSCAN3Q9BRR0 ATRNL1-207ENST00000527407 1583 ntTSL 5 BASIC31.15■■■□□ 2.58
ZKSCAN3Q9BRR0 MFAP2-202ENST00000375535 1260 ntTSL 1 (best) BASIC31.15■■■□□ 2.58
ZKSCAN3Q9BRR0 TXNL4A-210ENST00000591711 669 ntTSL 2 BASIC31.15■■■□□ 2.58
ZKSCAN3Q9BRR0 MYLIP-202ENST00000356840 1666 ntAPPRIS P1 TSL 1 (best) BASIC31.15■■■□□ 2.58
ZKSCAN3Q9BRR0 PLEKHG6-206ENST00000536531 1683 ntTSL 1 (best) BASIC31.14■■■□□ 2.58
ZKSCAN3Q9BRR0 SRSF9-201ENST00000229390 1201 ntAPPRIS P1 TSL 1 (best) BASIC31.14■■■□□ 2.58
ZKSCAN3Q9BRR0 AP000547.3-202ENST00000592107 1019 ntTSL 1 (best) BASIC31.14■■■□□ 2.58
ZKSCAN3Q9BRR0 SH3GL3-202ENST00000427482 1806 ntAPPRIS P1 TSL 1 (best) BASIC31.14■■■□□ 2.58
ZKSCAN3Q9BRR0 RASSF8-202ENST00000381352 2320 ntTSL 1 (best) BASIC31.14■■■□□ 2.58
ZKSCAN3Q9BRR0 CHPT1-201ENST00000229266 1585 ntAPPRIS P2 TSL 1 (best) BASIC31.13■■■□□ 2.57
ZKSCAN3Q9BRR0 GAL3ST1-204ENST00000402369 1712 ntAPPRIS P1 TSL 3 BASIC31.12■■■□□ 2.57
ZKSCAN3Q9BRR0 AC009097.4-201ENST00000566738 777 ntTSL 2 BASIC31.12■■■□□ 2.57
ZKSCAN3Q9BRR0 AC044849.2-201ENST00000606596 710 ntBASIC31.12■■■□□ 2.57
ZKSCAN3Q9BRR0 FTCD-204ENST00000397748 1955 ntTSL 1 (best) BASIC31.11■■■□□ 2.57
ZKSCAN3Q9BRR0 AL135925.1-201ENST00000605920 1701 ntBASIC31.11■■■□□ 2.57
ZKSCAN3Q9BRR0 TPM2-203ENST00000378292 2147 ntAPPRIS ALT1 TSL 1 (best) BASIC31.1■■■□□ 2.57
ZKSCAN3Q9BRR0 PPP3CC-204ENST00000518852 1598 ntTSL 2 BASIC31.09■■■□□ 2.57
ZKSCAN3Q9BRR0 PELI3-203ENST00000524466 1671 ntTSL 1 (best) BASIC31.09■■■□□ 2.57
ZKSCAN3Q9BRR0 ECI1-207ENST00000570258 1512 ntAPPRIS ALT2 TSL 5 BASIC31.08■■■□□ 2.57
Retrieved 100 of 98,524 protein–RNA pairs in 48.3 ms