Protein–RNA interactions for Protein: Q96RL7

VPS13A, Vacuolar protein sorting-associated protein 13A, humanhuman

Predictions only

Length 3,174 aa.

Download Table  
Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
VPS13AQ96RL7 SSU72-201ENST00000291386 1290 ntAPPRIS P1 TSL 1 (best) BASIC27.23■■□□□ 1.95
VPS13AQ96RL7 PIGX-201ENST00000296333 953 ntAPPRIS ALT2 TSL 2 BASIC27.23■■□□□ 1.95
VPS13AQ96RL7 HSD11B1L-209ENST00000577917 1553 ntTSL 1 (best) BASIC27.23■■□□□ 1.95
VPS13AQ96RL7 MISP3-202ENST00000587086 1535 ntAPPRIS P2 TSL 1 (best) BASIC27.23■■□□□ 1.95
VPS13AQ96RL7 AC016595.1-201ENST00000559410 383 ntTSL 3 BASIC27.22■■□□□ 1.95
VPS13AQ96RL7 SMARCD3-201ENST00000262188 1993 ntAPPRIS P1 TSL 1 (best) BASIC27.19■■□□□ 1.94
VPS13AQ96RL7 AP000911.3-201ENST00000526377 1130 ntTSL 3 BASIC27.19■■□□□ 1.94
VPS13AQ96RL7 ABHD17AP5-201ENST00000580133 923 ntBASIC27.18■■□□□ 1.94
VPS13AQ96RL7 ECI1-207ENST00000570258 1512 ntAPPRIS ALT2 TSL 5 BASIC27.17■■□□□ 1.94
VPS13AQ96RL7 C16orf95-206ENST00000618367 974 ntAPPRIS ALT2 TSL 2 BASIC27.16■■□□□ 1.94
VPS13AQ96RL7 DEXI-201ENST00000331808 1561 ntAPPRIS P1 TSL 1 (best) BASIC27.16■■□□□ 1.94
VPS13AQ96RL7 DCUN1D5-201ENST00000260247 1337 ntAPPRIS P1 TSL 1 (best) BASIC27.15■■□□□ 1.94
VPS13AQ96RL7 TXNL4A-210ENST00000591711 669 ntTSL 2 BASIC27.15■■□□□ 1.94
VPS13AQ96RL7 DUX4L11-201ENST00000611504 1267 ntBASIC27.15■■□□□ 1.94
VPS13AQ96RL7 DUX4L12-201ENST00000614593 1267 ntBASIC27.15■■□□□ 1.94
VPS13AQ96RL7 DUX4L14-201ENST00000621227 1267 ntBASIC27.15■■□□□ 1.94
VPS13AQ96RL7 GSTP1-202ENST00000398606 965 ntAPPRIS P1 TSL 1 (best) BASIC27.13■■□□□ 1.93
VPS13AQ96RL7 AC005540.1-201ENST00000413911 919 ntTSL 3 BASIC27.12■■□□□ 1.93
VPS13AQ96RL7 CYP26C1-201ENST00000285949 1569 ntAPPRIS P1 TSL 1 (best) BASIC27.12■■□□□ 1.93
VPS13AQ96RL7 MIR6090-201ENST00000622481 60 ntBASIC27.12■■□□□ 1.93
VPS13AQ96RL7 WASH5P-204ENST00000632292 975 ntBASIC27.1■■□□□ 1.93
VPS13AQ96RL7 DUSP14-206ENST00000617516 1537 ntAPPRIS P1 TSL 1 (best) BASIC27.1■■□□□ 1.93
VPS13AQ96RL7 CIB2-204ENST00000557846 934 ntTSL 3 BASIC27.1■■□□□ 1.93
VPS13AQ96RL7 ANXA5-201ENST00000296511 1762 ntAPPRIS P1 TSL 1 (best) BASIC27.1■■□□□ 1.93
VPS13AQ96RL7 STARD10-220ENST00000545082 1085 ntTSL 3 BASIC27.09■■□□□ 1.93
VPS13AQ96RL7 SRP68-213ENST00000629930 165 ntTSL 5 BASIC27.07■■□□□ 1.92
VPS13AQ96RL7 ZBTB25-202ENST00000555220 1440 ntTSL 1 (best) BASIC27.07■■□□□ 1.92
VPS13AQ96RL7 ATRAID-201ENST00000380171 1240 ntTSL 1 (best) BASIC27.07■■□□□ 1.92
VPS13AQ96RL7 C5orf66-AS1-201ENST00000507035 843 ntTSL 2 BASIC27.06■■□□□ 1.92
VPS13AQ96RL7 PLEKHJ1-201ENST00000326631 1206 ntAPPRIS P1 TSL 1 (best) BASIC27.06■■□□□ 1.92
VPS13AQ96RL7 HDAC3-201ENST00000305264 1959 ntAPPRIS P1 TSL 1 (best) BASIC27.06■■□□□ 1.92
VPS13AQ96RL7 CAPNS1-216ENST00000628306 1389 ntTSL 5 BASIC27.06■■□□□ 1.92
VPS13AQ96RL7 SFRP5-201ENST00000266066 1836 ntAPPRIS P1 TSL 1 (best) BASIC27.05■■□□□ 1.92
VPS13AQ96RL7 B4GALT7-201ENST00000029410 1747 ntAPPRIS P1 TSL 1 (best) BASIC27.05■■□□□ 1.92
VPS13AQ96RL7 MAD2L2-207ENST00000376692 1118 ntAPPRIS P1 TSL 1 (best) BASIC27.04■■□□□ 1.92
VPS13AQ96RL7 CSNK1E-205ENST00000405675 2127 ntTSL 5 BASIC27.03■■□□□ 1.92
VPS13AQ96RL7 RRAD-202ENST00000420652 1476 ntAPPRIS P1 TSL 1 (best) BASIC27.03■■□□□ 1.92
VPS13AQ96RL7 U2AF1-203ENST00000398137 1019 ntTSL 1 (best) BASIC27.03■■□□□ 1.92
VPS13AQ96RL7 U2AF1L5-212ENST00000639996 1019 ntTSL 1 (best) BASIC27.03■■□□□ 1.92
VPS13AQ96RL7 RNF126P1-201ENST00000567452 1320 ntBASIC27.02■■□□□ 1.92
VPS13AQ96RL7 POLR3H-201ENST00000337566 1330 ntTSL 1 (best) BASIC27.02■■□□□ 1.92
VPS13AQ96RL7 KHSRP-213ENST00000619396 2226 ntAPPRIS ALT2 TSL 5 BASIC27.02■■□□□ 1.92
VPS13AQ96RL7 CRIP1-201ENST00000330233 1311 ntAPPRIS P1 TSL 1 (best) BASIC27.01■■□□□ 1.91
VPS13AQ96RL7 C1orf232-201ENST00000634842 643 ntAPPRIS P5 TSL 5 BASIC27.01■■□□□ 1.91
VPS13AQ96RL7 IGFBP2-201ENST00000233809 1439 ntAPPRIS P1 TSL 1 (best) BASIC27.01■■□□□ 1.91
VPS13AQ96RL7 MAPK3-202ENST00000322266 1743 ntTSL 5 BASIC27.01■■□□□ 1.91
VPS13AQ96RL7 DOCK5-202ENST00000410074 786 ntTSL 2 BASIC27.01■■□□□ 1.91
VPS13AQ96RL7 CGREF1-204ENST00000402550 1575 ntTSL 2 BASIC27■■□□□ 1.91
VPS13AQ96RL7 UBE2A-207ENST00000628549 934 ntTSL 2 BASIC26.99■■□□□ 1.91
VPS13AQ96RL7 METRNL-202ENST00000570778 967 ntTSL 5 BASIC26.99■■□□□ 1.91
VPS13AQ96RL7 RUNX2-211ENST00000625924 1458 ntAPPRIS ALT2 TSL 1 (best) BASIC26.98■■□□□ 1.91
VPS13AQ96RL7 MAPK3-205ENST00000395202 1008 ntTSL 1 (best) BASIC26.98■■□□□ 1.91
VPS13AQ96RL7 PTPMT1-203ENST00000426530 1014 ntTSL 1 (best) BASIC26.98■■□□□ 1.91
VPS13AQ96RL7 TRAPPC10-202ENST00000380221 1763 ntTSL 1 (best) BASIC26.98■■□□□ 1.91
VPS13AQ96RL7 STUB1-201ENST00000219548 1472 ntAPPRIS P1 TSL 1 (best) BASIC26.98■■□□□ 1.91
VPS13AQ96RL7 CHMP4B-201ENST00000217402 1646 ntAPPRIS P1 TSL 1 (best) BASIC26.97■■□□□ 1.91
VPS13AQ96RL7 JUND-201ENST00000252818 1863 ntAPPRIS P1 BASIC26.96■■□□□ 1.91
VPS13AQ96RL7 UBE2S-203ENST00000589978 496 ntTSL 5 BASIC26.96■■□□□ 1.91
VPS13AQ96RL7 H2AFV-204ENST00000350771 687 ntTSL 2 BASIC26.95■■□□□ 1.91
VPS13AQ96RL7 AKR1E2-201ENST00000298375 1566 ntAPPRIS P1 TSL 1 (best) BASIC26.95■■□□□ 1.91
VPS13AQ96RL7 ADRA2C-201ENST00000330055 2129 ntAPPRIS P1 BASIC26.94■■□□□ 1.9
VPS13AQ96RL7 RHOC-202ENST00000339083 1418 ntAPPRIS P1 TSL 1 (best) BASIC26.94■■□□□ 1.9
VPS13AQ96RL7 RAB12-201ENST00000329286 2137 ntAPPRIS P1 TSL 1 (best) BASIC26.94■■□□□ 1.9
VPS13AQ96RL7 DUX4L13-201ENST00000554103 1267 ntBASIC26.93■■□□□ 1.9
VPS13AQ96RL7 DUX4L15-201ENST00000611059 1267 ntBASIC26.93■■□□□ 1.9
VPS13AQ96RL7 DUX4L23-201ENST00000615195 1269 ntBASIC26.93■■□□□ 1.9
VPS13AQ96RL7 DUX4L24-201ENST00000617576 1269 ntBASIC26.93■■□□□ 1.9
VPS13AQ96RL7 DUX4L22-201ENST00000618238 1269 ntBASIC26.93■■□□□ 1.9
VPS13AQ96RL7 DUX4L20-201ENST00000619712 1269 ntBASIC26.93■■□□□ 1.9
VPS13AQ96RL7 DUX4L21-201ENST00000622058 1269 ntBASIC26.93■■□□□ 1.9
VPS13AQ96RL7 DUX4L10-201ENST00000622460 1267 ntBASIC26.93■■□□□ 1.9
VPS13AQ96RL7 DUX4L25-201ENST00000624915 1269 ntBASIC26.93■■□□□ 1.9
VPS13AQ96RL7 POLR1D-201ENST00000302979 1166 ntAPPRIS P2 TSL 1 (best) BASIC26.93■■□□□ 1.9
VPS13AQ96RL7 AC009041.3-201ENST00000564390 879 ntTSL 5 BASIC26.91■■□□□ 1.9
VPS13AQ96RL7 RANBP1-202ENST00000402752 1132 ntAPPRIS ALT1 TSL 1 (best) BASIC26.91■■□□□ 1.9
VPS13AQ96RL7 HNRNPUL1-221ENST00000617305 1018 ntTSL 1 (best) BASIC26.91■■□□□ 1.9
VPS13AQ96RL7 FKBP1A-210ENST00000614856 562 ntTSL 2 BASIC26.9■■□□□ 1.9
VPS13AQ96RL7 QDPR-201ENST00000281243 1648 ntAPPRIS P1 TSL 1 (best) BASIC26.9■■□□□ 1.9
VPS13AQ96RL7 ENHO-201ENST00000399775 1082 ntAPPRIS P1 TSL 2 BASIC26.9■■□□□ 1.9
VPS13AQ96RL7 AGAP1-204ENST00000409457 2165 ntTSL 1 (best) BASIC26.88■■□□□ 1.89
VPS13AQ96RL7 MXD3-208ENST00000513063 861 ntAPPRIS P1 TSL 5 BASIC26.87■■□□□ 1.89
VPS13AQ96RL7 AC108673.1-201ENST00000510422 1159 ntBASIC26.87■■□□□ 1.89
VPS13AQ96RL7 PABPN1-201ENST00000216727 2001 ntAPPRIS P2 TSL 1 (best) BASIC26.86■■□□□ 1.89
VPS13AQ96RL7 DTNBP1-202ENST00000344537 1403 ntAPPRIS P1 TSL 1 (best) BASIC26.86■■□□□ 1.89
VPS13AQ96RL7 GALK1-205ENST00000588479 1866 ntAPPRIS P1 TSL 1 (best) BASIC26.86■■□□□ 1.89
VPS13AQ96RL7 KLC2-205ENST00000394078 1557 ntTSL 5 BASIC26.86■■□□□ 1.89
VPS13AQ96RL7 GPX1-201ENST00000419349 1106 ntBASIC26.84■■□□□ 1.89
VPS13AQ96RL7 MMP28-203ENST00000612672 1092 ntTSL 1 (best) BASIC26.84■■□□□ 1.89
VPS13AQ96RL7 ARL6IP4-211ENST00000454885 1318 ntAPPRIS ALT2 TSL 1 (best) BASIC26.84■■□□□ 1.89
VPS13AQ96RL7 METTL24-201ENST00000338882 1119 ntAPPRIS P1 TSL 5 BASIC26.83■■□□□ 1.89
VPS13AQ96RL7 KMT2E-AS1-201ENST00000453677 736 ntTSL 3 BASIC26.83■■□□□ 1.89
VPS13AQ96RL7 PRSS41-201ENST00000399677 1127 ntAPPRIS P1 TSL 5 BASIC26.83■■□□□ 1.89
VPS13AQ96RL7 NTF6A-201ENST00000591175 560 ntBASIC26.83■■□□□ 1.88
VPS13AQ96RL7 BLOC1S3-202ENST00000587722 732 ntAPPRIS P1 BASIC26.82■■□□□ 1.88
VPS13AQ96RL7 U2AF1L5-201ENST00000610664 897 ntAPPRIS P5 TSL 1 (best) BASIC26.82■■□□□ 1.88
VPS13AQ96RL7 HES6-205ENST00000409356 528 ntTSL 2 BASIC26.82■■□□□ 1.88
VPS13AQ96RL7 PTCH1-210ENST00000468211 1254 ntTSL 1 (best) BASIC26.82■■□□□ 1.88
VPS13AQ96RL7 AP000547.3-202ENST00000592107 1019 ntTSL 1 (best) BASIC26.81■■□□□ 1.88
VPS13AQ96RL7 KCNK1-202ENST00000366621 2161 ntAPPRIS P1 TSL 1 (best) BASIC26.81■■□□□ 1.88
VPS13AQ96RL7 AC068134.2-201ENST00000437095 576 ntTSL 3 BASIC26.81■■□□□ 1.88
Retrieved 100 of 98,524 protein–RNA pairs in 13.2 ms