Protein–RNA interactions for Protein: Q96M19

LINC00477, Putative transmembrane protein encoded by LINC00477, humanhuman

Predictions only

Length 166 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
LINC00477Q96M19 TPRA1-209ENST00000489960 1903 ntAPPRIS P1 TSL 5 BASIC19.92■□□□□ 0.78
LINC00477Q96M19 AC025431.1-201ENST00000559684 874 ntTSL 3 BASIC19.91■□□□□ 0.78
LINC00477Q96M19 CUL4A-202ENST00000375440 2364 ntAPPRIS P1 TSL 1 (best) BASIC19.91■□□□□ 0.78
LINC00477Q96M19 AVEN-201ENST00000306730 1605 ntAPPRIS P1 TSL 1 (best) BASIC19.91■□□□□ 0.78
LINC00477Q96M19 EFNA1-202ENST00000368407 1926 ntAPPRIS P1 TSL 1 (best) BASIC19.9■□□□□ 0.78
LINC00477Q96M19 RCC1L-202ENST00000614461 2419 ntTSL 1 (best) BASIC19.9■□□□□ 0.78
LINC00477Q96M19 FAAP20-204ENST00000400919 1413 ntTSL 3 BASIC19.9■□□□□ 0.78
LINC00477Q96M19 TPRA1-202ENST00000355552 1933 ntAPPRIS P1 TSL 1 (best) BASIC19.9■□□□□ 0.78
LINC00477Q96M19 MAGI2-211ENST00000535697 6146 ntTSL 5 BASIC19.89■□□□□ 0.78
LINC00477Q96M19 NRTN-201ENST00000303212 1109 ntAPPRIS P1 TSL 1 (best) BASIC19.89■□□□□ 0.77
LINC00477Q96M19 CDKN2D-202ENST00000393599 1422 ntAPPRIS P1 TSL 1 (best) BASIC19.89■□□□□ 0.77
LINC00477Q96M19 SPIRE1-203ENST00000410092 5533 ntAPPRIS P3 TSL 1 (best) BASIC19.88■□□□□ 0.77
LINC00477Q96M19 RNF150-204ENST00000507500 1530 ntTSL 1 (best) BASIC19.88■□□□□ 0.77
LINC00477Q96M19 JMJD8-216ENST00000609261 1901 ntAPPRIS ALT2 TSL 1 (best) BASIC19.88■□□□□ 0.77
LINC00477Q96M19 TCEA2-204ENST00000395053 1733 ntTSL 1 (best) BASIC19.88■□□□□ 0.77
LINC00477Q96M19 AL135925.1-201ENST00000605920 1701 ntBASIC19.88■□□□□ 0.77
LINC00477Q96M19 TESK1-206ENST00000620767 2438 ntAPPRIS P1 TSL 5 BASIC19.87■□□□□ 0.77
LINC00477Q96M19 SLC52A2-201ENST00000329994 1896 ntAPPRIS P1 TSL 1 (best) BASIC19.87■□□□□ 0.77
LINC00477Q96M19 GAL3ST1-205ENST00000406361 1819 ntAPPRIS P1 TSL 2 BASIC19.87■□□□□ 0.77
LINC00477Q96M19 TP53I13-201ENST00000301057 1530 ntAPPRIS P2 TSL 1 (best) BASIC19.86■□□□□ 0.77
LINC00477Q96M19 PQLC1-202ENST00000357575 2475 ntAPPRIS ALT1 TSL 5 BASIC19.86■□□□□ 0.77
LINC00477Q96M19 SIRT3-201ENST00000382743 2543 ntAPPRIS P2 TSL 1 (best) BASIC19.86■□□□□ 0.77
LINC00477Q96M19 AGFG1-205ENST00000409979 2089 ntAPPRIS ALT1 TSL 5 BASIC19.86■□□□□ 0.77
LINC00477Q96M19 ST6GALNAC6-203ENST00000373142 2448 ntTSL 1 (best) BASIC19.85■□□□□ 0.77
LINC00477Q96M19 SP8-201ENST00000361443 1714 ntAPPRIS P3 TSL 1 (best) BASIC19.85■□□□□ 0.77
LINC00477Q96M19 KLF16-203ENST00000592313 508 ntTSL 3 BASIC19.85■□□□□ 0.77
LINC00477Q96M19 GLRX5-201ENST00000331334 1564 ntAPPRIS P1 TSL 1 (best) BASIC19.85■□□□□ 0.77
LINC00477Q96M19 LINC01089-207ENST00000538335 630 ntTSL 3 BASIC19.84■□□□□ 0.77
LINC00477Q96M19 WASH5P-204ENST00000632292 975 ntBASIC19.84■□□□□ 0.77
LINC00477Q96M19 EXOC3L4-201ENST00000380069 2293 ntAPPRIS P1 TSL 1 (best) BASIC19.84■□□□□ 0.77
LINC00477Q96M19 WDSUB1-205ENST00000409990 1920 ntAPPRIS P1 TSL 2 BASIC19.84■□□□□ 0.77
LINC00477Q96M19 NRGN-202ENST00000412681 1106 ntAPPRIS P1 TSL 1 (best) BASIC19.83■□□□□ 0.77
LINC00477Q96M19 RUNDC3A-206ENST00000590941 1675 ntTSL 1 (best) BASIC19.83■□□□□ 0.76
LINC00477Q96M19 CGREF1-204ENST00000402550 1575 ntTSL 2 BASIC19.82■□□□□ 0.76
LINC00477Q96M19 FOXE3-201ENST00000335071 1981 ntAPPRIS P1 BASIC19.81■□□□□ 0.76
LINC00477Q96M19 VWA1-201ENST00000338660 2147 ntTSL 2 BASIC19.81■□□□□ 0.76
LINC00477Q96M19 HNRNPAB-202ENST00000358344 1796 ntAPPRIS P4 TSL 1 (best) BASIC19.81■□□□□ 0.76
LINC00477Q96M19 RRAGC-201ENST00000373001 2732 ntAPPRIS P1 TSL 1 (best) BASIC19.81■□□□□ 0.76
LINC00477Q96M19 FAM89B-201ENST00000316409 1409 ntTSL 1 (best) BASIC19.81■□□□□ 0.76
LINC00477Q96M19 SHOX2-204ENST00000483851 1866 ntAPPRIS ALT2 TSL 2 BASIC19.81■□□□□ 0.76
LINC00477Q96M19 EFNA3-201ENST00000368408 1782 ntAPPRIS P1 TSL 1 (best) BASIC19.8■□□□□ 0.76
LINC00477Q96M19 GUSB-202ENST00000421103 1742 ntTSL 2 BASIC19.8■□□□□ 0.76
LINC00477Q96M19 CDK2AP1-203ENST00000535979 1281 ntTSL 3 BASIC19.8■□□□□ 0.76
LINC00477Q96M19 SIGMAR1-203ENST00000378892 1743 ntTSL 2 BASIC19.79■□□□□ 0.76
LINC00477Q96M19 HAUS7-201ENST00000370210 1593 ntAPPRIS ALT2 TSL 2 BASIC19.78■□□□□ 0.76
LINC00477Q96M19 AC079305.1-201ENST00000428541 499 ntTSL 3 BASIC19.78■□□□□ 0.76
LINC00477Q96M19 AC139426.1-201ENST00000568218 2529 ntBASIC19.78■□□□□ 0.76
LINC00477Q96M19 ATPAF1-202ENST00000371937 1827 ntAPPRIS P1 TSL 1 (best) BASIC19.78■□□□□ 0.76
LINC00477Q96M19 TM6SF1-202ENST00000322019 2074 ntAPPRIS P1 TSL 1 (best) BASIC19.77■□□□□ 0.76
LINC00477Q96M19 FOXQ1-201ENST00000296839 2309 ntAPPRIS P1 BASIC19.77■□□□□ 0.76
LINC00477Q96M19 SLC9A3R2-202ENST00000432365 1564 ntTSL 1 (best) BASIC19.77■□□□□ 0.76
LINC00477Q96M19 NEUROG2-201ENST00000313341 2287 ntAPPRIS P1 TSL 1 (best) BASIC19.76■□□□□ 0.75
LINC00477Q96M19 FEV-201ENST00000295727 1879 ntAPPRIS P1 TSL 1 (best) BASIC19.76■□□□□ 0.75
LINC00477Q96M19 AL133380.1-201ENST00000506013 324 ntBASIC19.76■□□□□ 0.75
LINC00477Q96M19 SECTM1-201ENST00000269389 2235 ntAPPRIS P2 TSL 1 (best) BASIC19.76■□□□□ 0.75
LINC00477Q96M19 SIGMAR1-205ENST00000477726 840 ntTSL 1 (best) BASIC19.75■□□□□ 0.75
LINC00477Q96M19 RDX-210ENST00000530301 1549 ntTSL 1 (best) BASIC19.75■□□□□ 0.75
LINC00477Q96M19 SHF-206ENST00000560471 2499 ntTSL 5 BASIC19.75■□□□□ 0.75
LINC00477Q96M19 PCYT2-206ENST00000571105 1628 ntTSL 5 BASIC19.74■□□□□ 0.75
LINC00477Q96M19 NPTXR-202ENST00000640136 1503 ntAPPRIS P2 TSL 1 (best) BASIC19.74■□□□□ 0.75
LINC00477Q96M19 GLRB-203ENST00000509282 1757 ntAPPRIS P1 TSL 1 (best) BASIC19.74■□□□□ 0.75
LINC00477Q96M19 PGM5P2-201ENST00000613141 1980 ntTSL 1 (best) BASIC19.74■□□□□ 0.75
LINC00477Q96M19 RTN4R-201ENST00000043402 2157 ntAPPRIS P2 TSL 1 (best) BASIC19.73■□□□□ 0.75
LINC00477Q96M19 MXD3-203ENST00000439742 1483 ntAPPRIS P1 TSL 1 (best) BASIC19.73■□□□□ 0.75
LINC00477Q96M19 GKAP1-203ENST00000376371 1778 ntAPPRIS P1 TSL 1 (best) BASIC19.72■□□□□ 0.75
LINC00477Q96M19 LMTK3-202ENST00000600059 5113 ntAPPRIS ALT2 TSL 2 BASIC19.71■□□□□ 0.75
LINC00477Q96M19 AGPAT2-202ENST00000371696 1512 ntAPPRIS P1 TSL 1 (best) BASIC19.71■□□□□ 0.75
LINC00477Q96M19 GNPTAB-201ENST00000299314 5701 ntAPPRIS P1 TSL 1 (best) BASIC19.7■□□□□ 0.74
LINC00477Q96M19 XKR6-201ENST00000297303 1550 ntTSL 1 (best) BASIC19.7■□□□□ 0.74
LINC00477Q96M19 FZD2-201ENST00000315323 2112 ntAPPRIS P1 BASIC19.69■□□□□ 0.74
LINC00477Q96M19 C1orf122-204ENST00000468084 1234 ntAPPRIS ALT2 TSL 2 BASIC19.68■□□□□ 0.74
LINC00477Q96M19 CAPNS1-201ENST00000246533 1918 ntAPPRIS P2 TSL 1 (best) BASIC19.68■□□□□ 0.74
LINC00477Q96M19 SLC30A10-202ENST00000366926 1915 ntAPPRIS P1 TSL 1 (best) BASIC19.68■□□□□ 0.74
LINC00477Q96M19 CARS2-201ENST00000257347 1879 ntAPPRIS P1 TSL 1 (best) BASIC19.67■□□□□ 0.74
LINC00477Q96M19 RASSF8-202ENST00000381352 2320 ntTSL 1 (best) BASIC19.66■□□□□ 0.74
LINC00477Q96M19 YAP1-204ENST00000526343 2393 ntTSL 5 BASIC19.64■□□□□ 0.74
LINC00477Q96M19 ATPAF1-201ENST00000329231 1241 ntTSL 2 BASIC19.64■□□□□ 0.73
LINC00477Q96M19 IRX1-201ENST00000302006 1858 ntAPPRIS P1 TSL 1 (best) BASIC19.64■□□□□ 0.73
LINC00477Q96M19 CERS2-205ENST00000368954 2505 ntAPPRIS P1 TSL 1 (best) BASIC19.64■□□□□ 0.73
LINC00477Q96M19 NOP53-201ENST00000246802 1528 ntAPPRIS P1 TSL 1 (best) BASIC19.63■□□□□ 0.73
LINC00477Q96M19 FAM78B-202ENST00000354422 1475 ntAPPRIS P1 TSL 2 BASIC19.63■□□□□ 0.73
LINC00477Q96M19 ADNP-AS1-201ENST00000558899 927 ntTSL 3 BASIC19.63■□□□□ 0.73
LINC00477Q96M19 DPY19L1-209ENST00000638088 5075 ntAPPRIS ALT2 TSL 5 BASIC19.62■□□□□ 0.73
LINC00477Q96M19 FGF18-201ENST00000274625 1986 ntAPPRIS P1 TSL 1 (best) BASIC19.62■□□□□ 0.73
LINC00477Q96M19 BCL7C-201ENST00000215115 1740 ntAPPRIS P1 TSL 1 (best) BASIC19.61■□□□□ 0.73
LINC00477Q96M19 ARHGAP22-202ENST00000374170 2107 ntTSL 5 BASIC19.61■□□□□ 0.73
LINC00477Q96M19 IL17D-201ENST00000304920 1861 ntAPPRIS P1 TSL 1 (best) BASIC19.6■□□□□ 0.73
LINC00477Q96M19 COMMD3-201ENST00000376836 1342 ntAPPRIS P1 TSL 1 (best) BASIC19.6■□□□□ 0.73
LINC00477Q96M19 LGALS3-201ENST00000254301 1146 ntAPPRIS P1 TSL 1 (best) BASIC19.6■□□□□ 0.73
LINC00477Q96M19 AC009133.5-201ENST00000562594 473 ntTSL 4 BASIC19.6■□□□□ 0.73
LINC00477Q96M19 ITGA9-203ENST00000422441 2282 ntTSL 1 (best) BASIC19.6■□□□□ 0.73
LINC00477Q96M19 TESK1-201ENST00000336395 2421 ntAPPRIS P1 TSL 1 (best) BASIC19.6■□□□□ 0.73
LINC00477Q96M19 CCNYL1-205ENST00000420822 952 ntTSL 1 (best) BASIC19.59■□□□□ 0.73
LINC00477Q96M19 RCC1L-201ENST00000610322 2300 ntAPPRIS P1 TSL 1 (best) BASIC19.59■□□□□ 0.73
LINC00477Q96M19 COL13A1-214ENST00000522165 2061 ntAPPRIS ALT2 TSL 5 BASIC19.58■□□□□ 0.73
LINC00477Q96M19 HOXB3-212ENST00000498678 2196 ntAPPRIS P1 TSL 2 BASIC19.57■□□□□ 0.72
LINC00477Q96M19 GAL3ST1-204ENST00000402369 1712 ntAPPRIS P1 TSL 3 BASIC19.57■□□□□ 0.72
LINC00477Q96M19 GNPTAB-202ENST00000392919 760 ntTSL 1 (best) BASIC19.57■□□□□ 0.72
LINC00477Q96M19 RARRES2P7-201ENST00000567349 469 ntBASIC19.57■□□□□ 0.72
LINC00477Q96M19 TMEM9-201ENST00000367330 1959 ntAPPRIS P3 TSL 1 (best) BASIC19.57■□□□□ 0.72
Retrieved 100 of 98,524 protein–RNA pairs in 31.5 ms