Protein–RNA interactions for Protein: Q8VHY0

Cspg4, Chondroitin sulfate proteoglycan 4, mousemouse

Predictions only

Length 2,327 aa.

Download Table  
Protein RNA Prediction (catRAPID) Interaction (Experimental data)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
Cspg4Q8VHY0 Fam149b-201ENSMUST00000037698 924 ntTSL 1 (best) BASIC22■■□□□ 1.11
Cspg4Q8VHY0 4930577N17Rik-201ENSMUST00000139771 1625 ntBASIC22■■□□□ 1.11
Cspg4Q8VHY0 Frs3-201ENSMUST00000113296 2144 ntAPPRIS P1 TSL 1 (best) BASIC21.98■■□□□ 1.11
Cspg4Q8VHY0 Gm26508-201ENSMUST00000181285 1516 ntTSL 5 BASIC21.98■■□□□ 1.11
Cspg4Q8VHY0 Egr3-201ENSMUST00000035908 1509 ntAPPRIS ALT1 TSL 1 (best) BASIC21.98■■□□□ 1.11
Cspg4Q8VHY0 Gm5814-201ENSMUST00000177586 378 ntAPPRIS P1 BASIC21.98■■□□□ 1.11
Cspg4Q8VHY0 AC163623.1-201ENSMUST00000213738 727 ntAPPRIS P1 TSL 3 BASIC21.97■■□□□ 1.11
Cspg4Q8VHY0 Cops6-202ENSMUST00000110951 1098 ntAPPRIS ALT2 TSL 1 (best) BASIC21.97■■□□□ 1.11
Cspg4Q8VHY0 Gm20402-201ENSMUST00000174738 687 ntTSL 3 BASIC21.97■■□□□ 1.11
Cspg4Q8VHY0 Tlx1-201ENSMUST00000026236 2065 ntAPPRIS P1 TSL 1 (best) BASIC21.96■■□□□ 1.11
Cspg4Q8VHY0 Glrx2-205ENSMUST00000145571 758 ntTSL 2 BASIC21.96■■□□□ 1.11
Cspg4Q8VHY0 Dleu2-206ENSMUST00000182537 318 ntTSL 2 BASIC21.96■■□□□ 1.11
Cspg4Q8VHY0 Prelid3b-201ENSMUST00000016401 1553 ntAPPRIS P1 TSL 1 (best) BASIC21.96■■□□□ 1.11
Cspg4Q8VHY0 Bcl7b-202ENSMUST00000111187 564 ntTSL 1 (best) BASIC21.96■■□□□ 1.11
Cspg4Q8VHY0 Gm7334-201ENSMUST00000061681 1356 ntAPPRIS P1 BASIC21.95■■□□□ 1.1
Cspg4Q8VHY0 Krtap28-13-201ENSMUST00000188005 992 ntAPPRIS P1 BASIC21.94■■□□□ 1.1
Cspg4Q8VHY0 Rpsa-204ENSMUST00000217317 1599 ntAPPRIS P1 TSL 1 (best) BASIC21.94■■□□□ 1.1
Cspg4Q8VHY0 Pwwp2a-202ENSMUST00000094294 1814 ntTSL 5 BASIC21.93■■□□□ 1.1
Cspg4Q8VHY0 Akt1s1-202ENSMUST00000107880 1757 ntAPPRIS P3 TSL 1 (best) BASIC21.93■■□□□ 1.1
Cspg4Q8VHY0 E2f4-201ENSMUST00000015003 1993 ntAPPRIS P1 TSL 1 (best) BASIC21.92■■□□□ 1.1
Cspg4Q8VHY0 Smarcad1-211ENSMUST00000204696 734 ntTSL 1 (best) BASIC21.92■■□□□ 1.1
Cspg4Q8VHY0 Phlda3-201ENSMUST00000038945 1435 ntAPPRIS P1 TSL 1 (best) BASIC21.92■■□□□ 1.1
Cspg4Q8VHY0 Epcam-201ENSMUST00000053577 2040 ntAPPRIS P1 TSL 5 BASIC21.92■■□□□ 1.1
Cspg4Q8VHY0 Cacfd1-203ENSMUST00000114005 1286 ntTSL 1 (best) BASIC21.91■■□□□ 1.1
Cspg4Q8VHY0 Gltp-201ENSMUST00000012028 1762 ntAPPRIS P1 TSL 1 (best) BASIC21.91■■□□□ 1.1
Cspg4Q8VHY0 Gdf7-202ENSMUST00000220073 1399 ntAPPRIS ALT2 TSL 1 (best) BASIC21.9■■□□□ 1.1
Cspg4Q8VHY0 Ppa2-201ENSMUST00000029644 1226 ntAPPRIS P3 TSL 1 (best) BASIC21.89■■□□□ 1.09
Cspg4Q8VHY0 Iscu-203ENSMUST00000112312 1116 ntTSL 5 BASIC21.88■■□□□ 1.09
Cspg4Q8VHY0 Cpsf4-201ENSMUST00000070487 1606 ntTSL 1 (best) BASIC21.87■■□□□ 1.09
Cspg4Q8VHY0 Fam136a-201ENSMUST00000071492 1643 ntAPPRIS P1 TSL 1 (best) BASIC21.87■■□□□ 1.09
Cspg4Q8VHY0 Smagp-202ENSMUST00000172334 952 ntAPPRIS P1 TSL 2 BASIC21.87■■□□□ 1.09
Cspg4Q8VHY0 Reep6-203ENSMUST00000105355 2127 ntAPPRIS ALT2 TSL 1 (best) BASIC21.87■■□□□ 1.09
Cspg4Q8VHY0 Reep6-204ENSMUST00000105357 2127 ntTSL 1 (best) BASIC21.87■■□□□ 1.09
Cspg4Q8VHY0 Triobp-206ENSMUST00000130663 1660 ntAPPRIS ALT2 TSL 5 BASIC21.86■■□□□ 1.09
Cspg4Q8VHY0 Rbfox2-201ENSMUST00000048145 1720 ntTSL 1 (best) BASIC21.86■■□□□ 1.09
Cspg4Q8VHY0 Bckdhb-201ENSMUST00000034801 1472 ntAPPRIS P3 TSL 1 (best) BASIC21.86■■□□□ 1.09
Cspg4Q8VHY0 Ppp4c-211ENSMUST00000206570 1400 ntAPPRIS P1 TSL 1 (best) BASIC21.85■■□□□ 1.09
Cspg4Q8VHY0 Gm13889-202ENSMUST00000148314 1240 ntAPPRIS P1 BASIC21.85■■□□□ 1.09
Cspg4Q8VHY0 Fam241a-202ENSMUST00000199273 2234 ntAPPRIS P1 TSL 1 (best) BASIC21.85■■□□□ 1.09
Cspg4Q8VHY0 Ldb1-208ENSMUST00000185355 2088 ntTSL 1 (best) BASIC21.85■■□□□ 1.09
Cspg4Q8VHY0 Rpia-201ENSMUST00000066134 1829 ntAPPRIS P1 TSL 1 (best) BASIC21.85■■□□□ 1.09
Cspg4Q8VHY0 Rexo2-210ENSMUST00000217037 609 ntTSL 3 BASIC21.85■■□□□ 1.09
Cspg4Q8VHY0 Ccz1-201ENSMUST00000031621 1769 ntAPPRIS P1 TSL 1 (best) BASIC21.84■■□□□ 1.09
Cspg4Q8VHY0 Paip1-203ENSMUST00000126957 1731 ntTSL 5 BASIC21.83■■□□□ 1.09
Cspg4Q8VHY0 Osbpl1a-209ENSMUST00000122175 1203 ntTSL 1 (best) BASIC21.82■■□□□ 1.08
Cspg4Q8VHY0 6330420H09Rik-201ENSMUST00000211371 1316 ntTSL 1 (best) BASIC21.81■■□□□ 1.08
Cspg4Q8VHY0 Flt3l-211ENSMUST00000211429 1358 ntAPPRIS ALT2 TSL 1 (best) BASIC21.81■■□□□ 1.08
Cspg4Q8VHY0 Ldb1-207ENSMUST00000156585 2014 ntTSL 1 (best) BASIC21.81■■□□□ 1.08
Cspg4Q8VHY0 Nkain2-201ENSMUST00000092602 558 ntBASIC21.8■■□□□ 1.08
Cspg4Q8VHY0 Ywhaq-202ENSMUST00000103002 2110 ntAPPRIS P1 TSL 1 (best) BASIC21.8■■□□□ 1.08
Cspg4Q8VHY0 Ybx2-205ENSMUST00000149194 1235 ntTSL 5 BASIC21.79■■□□□ 1.08
Cspg4Q8VHY0 Ccm2-201ENSMUST00000000388 1858 ntAPPRIS P1 TSL 1 (best) BASIC21.79■■□□□ 1.08
Cspg4Q8VHY0 Tgfbr1-205ENSMUST00000126171 1829 ntTSL 5 BASIC21.79■■□□□ 1.08
Cspg4Q8VHY0 A430072P03Rik-201ENSMUST00000161480 1510 ntTSL 1 (best) BASIC21.78■■□□□ 1.08
Cspg4Q8VHY0 Amigo1-203ENSMUST00000106659 1360 ntTSL 1 (best) BASIC21.78■■□□□ 1.08
Cspg4Q8VHY0 Raly-203ENSMUST00000109701 1709 ntAPPRIS P3 TSL 1 (best) BASIC21.78■■□□□ 1.08
Cspg4Q8VHY0 Hmx1-201ENSMUST00000087674 1526 ntAPPRIS P1 TSL 1 (best) BASIC21.77■■□□□ 1.08
Cspg4Q8VHY0 A530058N18Rik-208ENSMUST00000131299 1387 ntTSL 2 BASIC21.75■■□□□ 1.07
Cspg4Q8VHY0 Gm30346-201ENSMUST00000218641 1699 ntBASIC21.75■■□□□ 1.07
Cspg4Q8VHY0 Chtf8-205ENSMUST00000176515 694 ntTSL 2 BASIC21.75■■□□□ 1.07
Cspg4Q8VHY0 Sugct-202ENSMUST00000220514 1351 ntTSL 1 (best) BASIC21.72■■□□□ 1.07
Cspg4Q8VHY0 Endog-201ENSMUST00000015481 1063 ntAPPRIS P1 TSL 1 (best) BASIC21.72■■□□□ 1.07
Cspg4Q8VHY0 Pm20d2-201ENSMUST00000098181 1445 ntAPPRIS P1 TSL 5 BASIC21.71■■□□□ 1.07
Cspg4Q8VHY0 E130218I03Rik-204ENSMUST00000131447 888 ntAPPRIS P1 TSL 5 BASIC21.71■■□□□ 1.07
Cspg4Q8VHY0 Ankrd60-202ENSMUST00000119453 1084 ntAPPRIS P2 TSL 2 BASIC21.71■■□□□ 1.07
Cspg4Q8VHY0 Vegfa-211ENSMUST00000167860 975 ntTSL 1 (best) BASIC21.71■■□□□ 1.07
Cspg4Q8VHY0 Vegfa-212ENSMUST00000214739 1107 ntAPPRIS ALT2 TSL 1 (best) BASIC21.71■■□□□ 1.07
Cspg4Q8VHY0 Vegfa-213ENSMUST00000217017 1179 ntAPPRIS P4 TSL 1 (best) BASIC21.71■■□□□ 1.07
Cspg4Q8VHY0 A530058N18Rik-203ENSMUST00000135729 1405 ntTSL 1 (best) BASIC21.7■■□□□ 1.06
Cspg4Q8VHY0 Pard6a-201ENSMUST00000093195 1265 ntAPPRIS P3 TSL 1 (best) BASIC21.69■■□□□ 1.06
Cspg4Q8VHY0 Pitpna-205ENSMUST00000179445 1665 ntAPPRIS ALT1 TSL 5 BASIC21.69■■□□□ 1.06
Cspg4Q8VHY0 Gm44957-202ENSMUST00000205137 448 ntTSL 3 BASIC21.68■■□□□ 1.06
Cspg4Q8VHY0 Gm28052-201ENSMUST00000150388 380 ntTSL 3 BASIC21.67■■□□□ 1.06
Cspg4Q8VHY0 Ppp2r2d-201ENSMUST00000041097 2081 ntAPPRIS P1 TSL 1 (best) BASIC21.67■■□□□ 1.06
Cspg4Q8VHY0 Fgf20-201ENSMUST00000034014 1476 ntAPPRIS P1 TSL 1 (best) BASIC21.66■■□□□ 1.06
Cspg4Q8VHY0 Gm45051-201ENSMUST00000206838 963 ntTSL 1 (best) BASIC21.66■■□□□ 1.06
Cspg4Q8VHY0 Dctpp1-201ENSMUST00000035276 676 ntAPPRIS P1 TSL 1 (best) BASIC21.65■■□□□ 1.06
Cspg4Q8VHY0 Snx3-201ENSMUST00000019939 1401 ntAPPRIS P1 TSL 1 (best) BASIC21.64■■□□□ 1.05
Cspg4Q8VHY0 Rbm17-201ENSMUST00000040314 1599 ntAPPRIS P1 TSL 1 (best) BASIC21.63■■□□□ 1.05
Cspg4Q8VHY0 Mon2-207ENSMUST00000219203 1844 ntTSL 1 (best) BASIC21.63■■□□□ 1.05
Cspg4Q8VHY0 Tlx2-202ENSMUST00000174674 1514 ntTSL 1 (best) BASIC21.63■■□□□ 1.05
Cspg4Q8VHY0 Serpinb6a-201ENSMUST00000017188 1504 ntTSL 1 (best) BASIC21.62■■□□□ 1.05
Cspg4Q8VHY0 Rhobtb3-202ENSMUST00000109606 1676 ntTSL 1 (best) BASIC21.61■■□□□ 1.05
Cspg4Q8VHY0 Plpp2-201ENSMUST00000063879 1654 ntAPPRIS P3 TSL 1 (best) BASIC21.61■■□□□ 1.05
Cspg4Q8VHY0 A030005K14Rik-201ENSMUST00000193762 1093 ntAPPRIS P1 BASIC21.61■■□□□ 1.05
Cspg4Q8VHY0 Ccdc50-202ENSMUST00000096127 1096 ntTSL 1 (best) BASIC21.61■■□□□ 1.05
Cspg4Q8VHY0 AC117232.3-201ENSMUST00000217817 338 ntTSL 2 BASIC21.6■■□□□ 1.05
Cspg4Q8VHY0 A030003K21Rik-201ENSMUST00000222600 830 ntAPPRIS P1 BASIC21.6■■□□□ 1.05
Cspg4Q8VHY0 5730480H06Rik-201ENSMUST00000030968 1616 ntAPPRIS P1 TSL 1 (best) BASIC21.6■■□□□ 1.05
Cspg4Q8VHY0 Zmynd12-201ENSMUST00000094819 1464 ntAPPRIS P1 TSL 1 (best) BASIC21.59■■□□□ 1.05
Cspg4Q8VHY0 Ildr2-207ENSMUST00000195557 1947 ntAPPRIS ALT2 TSL 1 (best) BASIC21.59■■□□□ 1.05
Cspg4Q8VHY0 Nectin3-203ENSMUST00000096052 1746 ntAPPRIS ALT2 TSL 1 (best) BASIC21.58■■□□□ 1.05
Cspg4Q8VHY0 Slc39a13-203ENSMUST00000111436 1291 ntTSL 1 (best) BASIC21.58■■□□□ 1.04
Cspg4Q8VHY0 C2cd4b-201ENSMUST00000171652 1327 ntAPPRIS P1 TSL 1 (best) BASIC21.58■■□□□ 1.04
Cspg4Q8VHY0 AC125444.1-201ENSMUST00000223536 639 ntAPPRIS P1 BASIC21.57■■□□□ 1.04
Cspg4Q8VHY0 Gpr137c-205ENSMUST00000227009 771 ntAPPRIS ALT2 BASIC21.57■■□□□ 1.04
Cspg4Q8VHY0 P2rx2-205ENSMUST00000200037 1569 ntAPPRIS ALT2 TSL 1 (best) BASIC21.57■■□□□ 1.04
Cspg4Q8VHY0 Gm28529-202ENSMUST00000189675 670 ntTSL 2 BASIC21.56■■□□□ 1.04
Cspg4Q8VHY0 Cabp1-204ENSMUST00000112113 1621 ntTSL 1 (best) BASIC21.56■■□□□ 1.04
Cspg4Q8VHY0 Rbmxl2-201ENSMUST00000098135 1472 ntAPPRIS P1 BASIC21.55■■□□□ 1.04
Retrieved 100 of 76,532 protein–RNA pairs in 72.2 ms