Protein–RNA interactions for Protein: Q8TD31

CCHCR1, Coiled-coil alpha-helical rod protein 1, humanhuman

Predictions only

Length 782 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
CCHCR1Q8TD31 CCDC88C-205ENST00000553403 1651 ntTSL 1 (best) BASIC27.62■■■□□ 2.01
CCHCR1Q8TD31 AC139426.1-201ENST00000568218 2529 ntBASIC27.62■■■□□ 2.01
CCHCR1Q8TD31 EMC10-202ENST00000376918 2014 ntAPPRIS ALT2 TSL 1 (best) BASIC27.62■■■□□ 2.01
CCHCR1Q8TD31 MSX1-201ENST00000382723 1939 ntAPPRIS P1 TSL 1 (best) BASIC27.61■■■□□ 2.01
CCHCR1Q8TD31 CHPT1-205ENST00000549872 2001 ntAPPRIS ALT2 TSL 5 BASIC27.6■■■□□ 2.01
CCHCR1Q8TD31 PGM5-201ENST00000396392 1782 ntTSL 1 (best) BASIC27.6■■■□□ 2.01
CCHCR1Q8TD31 EXOC3L4-201ENST00000380069 2293 ntAPPRIS P1 TSL 1 (best) BASIC27.6■■■□□ 2.01
CCHCR1Q8TD31 SSBP4-202ENST00000348495 1721 ntAPPRIS ALT1 TSL 2 BASIC27.59■■■□□ 2.01
CCHCR1Q8TD31 SETD8P1-201ENST00000623146 1180 ntBASIC27.58■■■□□ 2.01
CCHCR1Q8TD31 CDKN2D-202ENST00000393599 1422 ntAPPRIS P1 TSL 1 (best) BASIC27.58■■■□□ 2
CCHCR1Q8TD31 TP53I13-201ENST00000301057 1530 ntAPPRIS P2 TSL 1 (best) BASIC27.57■■■□□ 2
CCHCR1Q8TD31 RRAGC-201ENST00000373001 2732 ntAPPRIS P1 TSL 1 (best) BASIC27.57■■■□□ 2
CCHCR1Q8TD31 ABHD17A-201ENST00000250974 1630 ntTSL 1 (best) BASIC27.56■■■□□ 2
CCHCR1Q8TD31 RAB26-201ENST00000210187 1675 ntAPPRIS P1 TSL 1 (best) BASIC27.56■■■□□ 2
CCHCR1Q8TD31 AGFG1-205ENST00000409979 2089 ntAPPRIS ALT1 TSL 5 BASIC27.55■■■□□ 2
CCHCR1Q8TD31 SIRT3-201ENST00000382743 2543 ntAPPRIS P2 TSL 1 (best) BASIC27.55■■■□□ 2
CCHCR1Q8TD31 ATPAF1-201ENST00000329231 1241 ntTSL 2 BASIC27.55■■■□□ 2
CCHCR1Q8TD31 TXN-202ENST00000374517 869 ntAPPRIS P1 TSL 1 (best) BASIC27.55■■■□□ 2
CCHCR1Q8TD31 HOXB3-211ENST00000490677 1109 ntTSL 1 (best) BASIC27.55■■■□□ 2
CCHCR1Q8TD31 INAFM1-201ENST00000552360 1255 ntAPPRIS P1 BASIC27.55■■■□□ 2
CCHCR1Q8TD31 HES7-202ENST00000541682 1674 ntAPPRIS ALT1 TSL 1 (best) BASIC27.54■■■□□ 2
CCHCR1Q8TD31 WDSUB1-205ENST00000409990 1920 ntAPPRIS P1 TSL 2 BASIC27.53■■■□□ 2
CCHCR1Q8TD31 IL13RA1-201ENST00000371642 1096 ntTSL 1 (best) BASIC27.53■■■□□ 2
CCHCR1Q8TD31 CHMP4B-201ENST00000217402 1646 ntAPPRIS P1 TSL 1 (best) BASIC27.52■■■□□ 2
CCHCR1Q8TD31 VWA1-201ENST00000338660 2147 ntTSL 2 BASIC27.52■■■□□ 2
CCHCR1Q8TD31 GAL3ST1-205ENST00000406361 1819 ntAPPRIS P1 TSL 2 BASIC27.51■■□□□ 1.99
CCHCR1Q8TD31 TSPAN11-203ENST00000545802 1649 ntTSL 1 (best) BASIC27.5■■□□□ 1.99
CCHCR1Q8TD31 SHF-206ENST00000560471 2499 ntTSL 5 BASIC27.48■■□□□ 1.99
CCHCR1Q8TD31 SP8-201ENST00000361443 1714 ntAPPRIS P3 TSL 1 (best) BASIC27.48■■□□□ 1.99
CCHCR1Q8TD31 KCNQ5-204ENST00000370392 1469 ntTSL 1 (best) BASIC27.48■■□□□ 1.99
CCHCR1Q8TD31 SLC52A2-201ENST00000329994 1896 ntAPPRIS P1 TSL 1 (best) BASIC27.48■■□□□ 1.99
CCHCR1Q8TD31 FAAP20-204ENST00000400919 1413 ntTSL 3 BASIC27.48■■□□□ 1.99
CCHCR1Q8TD31 AL133380.1-201ENST00000506013 324 ntBASIC27.46■■□□□ 1.99
CCHCR1Q8TD31 RUNDC3A-206ENST00000590941 1675 ntTSL 1 (best) BASIC27.46■■□□□ 1.99
CCHCR1Q8TD31 PURG-201ENST00000339382 2693 ntTSL 1 (best) BASIC27.45■■□□□ 1.99
CCHCR1Q8TD31 SECTM1-201ENST00000269389 2235 ntAPPRIS P2 TSL 1 (best) BASIC27.45■■□□□ 1.99
CCHCR1Q8TD31 FEV-201ENST00000295727 1879 ntAPPRIS P1 TSL 1 (best) BASIC27.44■■□□□ 1.98
CCHCR1Q8TD31 AVEN-201ENST00000306730 1605 ntAPPRIS P1 TSL 1 (best) BASIC27.44■■□□□ 1.98
CCHCR1Q8TD31 AL135925.1-201ENST00000605920 1701 ntBASIC27.44■■□□□ 1.98
CCHCR1Q8TD31 LGALS3-201ENST00000254301 1146 ntAPPRIS P1 TSL 1 (best) BASIC27.43■■□□□ 1.98
CCHCR1Q8TD31 EFNA3-201ENST00000368408 1782 ntAPPRIS P1 TSL 1 (best) BASIC27.43■■□□□ 1.98
CCHCR1Q8TD31 HDAC3-201ENST00000305264 1959 ntAPPRIS P1 TSL 1 (best) BASIC27.42■■□□□ 1.98
CCHCR1Q8TD31 FOXE3-201ENST00000335071 1981 ntAPPRIS P1 BASIC27.42■■□□□ 1.98
CCHCR1Q8TD31 TCEA2-204ENST00000395053 1733 ntTSL 1 (best) BASIC27.42■■□□□ 1.98
CCHCR1Q8TD31 CADPS-215ENST00000490353 2669 ntTSL 5 BASIC27.42■■□□□ 1.98
CCHCR1Q8TD31 ARTN-204ENST00000438616 889 ntTSL 1 (best) BASIC27.42■■□□□ 1.98
CCHCR1Q8TD31 AC097358.2-201ENST00000607541 1159 ntBASIC27.42■■□□□ 1.98
CCHCR1Q8TD31 LY6K-203ENST00000519387 963 ntAPPRIS ALT2 TSL 2 BASIC27.41■■□□□ 1.98
CCHCR1Q8TD31 SLC12A2-202ENST00000343225 5509 ntAPPRIS ALT2 TSL 1 (best) BASIC27.41■■□□□ 1.98
CCHCR1Q8TD31 FZD2-201ENST00000315323 2112 ntAPPRIS P1 BASIC27.4■■□□□ 1.98
CCHCR1Q8TD31 FAM117A-201ENST00000240364 2365 ntAPPRIS P2 TSL 1 (best) BASIC27.4■■□□□ 1.98
CCHCR1Q8TD31 AUTS2-202ENST00000403018 957 ntTSL 1 (best) BASIC27.39■■□□□ 1.98
CCHCR1Q8TD31 JMJD8-216ENST00000609261 1901 ntAPPRIS ALT2 TSL 1 (best) BASIC27.39■■□□□ 1.97
CCHCR1Q8TD31 RTN4R-201ENST00000043402 2157 ntAPPRIS P2 TSL 1 (best) BASIC27.39■■□□□ 1.97
CCHCR1Q8TD31 PIP4K2B-204ENST00000619039 5734 ntAPPRIS P1 TSL 1 (best) BASIC27.38■■□□□ 1.97
CCHCR1Q8TD31 HNRNPAB-202ENST00000358344 1796 ntAPPRIS P4 TSL 1 (best) BASIC27.38■■□□□ 1.97
CCHCR1Q8TD31 SIGMAR1-203ENST00000378892 1743 ntTSL 2 BASIC27.38■■□□□ 1.97
CCHCR1Q8TD31 FOXQ1-201ENST00000296839 2309 ntAPPRIS P1 BASIC27.38■■□□□ 1.97
CCHCR1Q8TD31 PAPD7-201ENST00000230859 5459 ntTSL 1 (best) BASIC27.37■■□□□ 1.97
CCHCR1Q8TD31 SHOX2-204ENST00000483851 1866 ntAPPRIS ALT2 TSL 2 BASIC27.37■■□□□ 1.97
CCHCR1Q8TD31 TM6SF1-202ENST00000322019 2074 ntAPPRIS P1 TSL 1 (best) BASIC27.37■■□□□ 1.97
CCHCR1Q8TD31 MARCH2-202ENST00000381035 1192 ntTSL 5 BASIC27.36■■□□□ 1.97
CCHCR1Q8TD31 MZT2B-202ENST00000409255 769 ntAPPRIS ALT2 TSL 5 BASIC27.35■■□□□ 1.97
CCHCR1Q8TD31 SIGMAR1-205ENST00000477726 840 ntTSL 1 (best) BASIC27.35■■□□□ 1.97
CCHCR1Q8TD31 AC068152.1-210ENST00000574741 836 ntTSL 3 BASIC27.35■■□□□ 1.97
CCHCR1Q8TD31 UBALD2-203ENST00000589240 660 ntTSL 2 BASIC27.35■■□□□ 1.97
CCHCR1Q8TD31 AC136428.2-201ENST00000563187 214 ntBASIC27.34■■□□□ 1.97
CCHCR1Q8TD31 ARPC5L-202ENST00000353214 2507 ntAPPRIS P1 TSL 2 BASIC27.34■■□□□ 1.97
CCHCR1Q8TD31 GLRX5-201ENST00000331334 1564 ntAPPRIS P1 TSL 1 (best) BASIC27.34■■□□□ 1.97
CCHCR1Q8TD31 PCBD2-201ENST00000254908 1223 ntAPPRIS P1 TSL 1 (best) BASIC27.33■■□□□ 1.97
CCHCR1Q8TD31 C1orf122-204ENST00000468084 1234 ntAPPRIS ALT2 TSL 2 BASIC27.33■■□□□ 1.97
CCHCR1Q8TD31 PGM5P2-201ENST00000613141 1980 ntTSL 1 (best) BASIC27.33■■□□□ 1.97
CCHCR1Q8TD31 AL109917.1-201ENST00000412228 906 ntTSL 2 BASIC27.32■■□□□ 1.96
CCHCR1Q8TD31 RNF150-204ENST00000507500 1530 ntTSL 1 (best) BASIC27.3■■□□□ 1.96
CCHCR1Q8TD31 HAUS7-201ENST00000370210 1593 ntAPPRIS ALT2 TSL 2 BASIC27.3■■□□□ 1.96
CCHCR1Q8TD31 ZIC2-201ENST00000376335 2983 ntAPPRIS P1 TSL 1 (best) BASIC27.3■■□□□ 1.96
CCHCR1Q8TD31 ATPAF1-202ENST00000371937 1827 ntAPPRIS P1 TSL 1 (best) BASIC27.3■■□□□ 1.96
CCHCR1Q8TD31 FTCDNL1-201ENST00000416668 944 ntTSL 1 (best) BASIC27.29■■□□□ 1.96
CCHCR1Q8TD31 GKAP1-203ENST00000376371 1778 ntAPPRIS P1 TSL 1 (best) BASIC27.29■■□□□ 1.96
CCHCR1Q8TD31 CERS2-205ENST00000368954 2505 ntAPPRIS P1 TSL 1 (best) BASIC27.29■■□□□ 1.96
CCHCR1Q8TD31 MXI1-201ENST00000239007 2424 ntAPPRIS ALT1 TSL 1 (best) BASIC27.28■■□□□ 1.96
CCHCR1Q8TD31 AL133346.1-201ENST00000435287 495 ntTSL 2 BASIC27.27■■□□□ 1.96
CCHCR1Q8TD31 NADK2-210ENST00000514504 1233 ntTSL 5 BASIC27.27■■□□□ 1.96
CCHCR1Q8TD31 AC006486.1-201ENST00000594664 634 ntAPPRIS P1 TSL 3 BASIC27.27■■□□□ 1.96
CCHCR1Q8TD31 GUSB-202ENST00000421103 1742 ntTSL 2 BASIC27.26■■□□□ 1.95
CCHCR1Q8TD31 SLC30A10-202ENST00000366926 1915 ntAPPRIS P1 TSL 1 (best) BASIC27.26■■□□□ 1.95
CCHCR1Q8TD31 LRRC75B-201ENST00000318753 1238 ntAPPRIS P1 TSL 1 (best) BASIC27.25■■□□□ 1.95
CCHCR1Q8TD31 RDX-210ENST00000530301 1549 ntTSL 1 (best) BASIC27.25■■□□□ 1.95
CCHCR1Q8TD31 ITGA9-203ENST00000422441 2282 ntTSL 1 (best) BASIC27.24■■□□□ 1.95
CCHCR1Q8TD31 CGREF1-204ENST00000402550 1575 ntTSL 2 BASIC27.24■■□□□ 1.95
CCHCR1Q8TD31 ZFAND2B-204ENST00000409217 886 ntTSL 2 BASIC27.24■■□□□ 1.95
CCHCR1Q8TD31 CCNYL1-205ENST00000420822 952 ntTSL 1 (best) BASIC27.24■■□□□ 1.95
CCHCR1Q8TD31 FAM89B-201ENST00000316409 1409 ntTSL 1 (best) BASIC27.24■■□□□ 1.95
CCHCR1Q8TD31 ARHGAP22-202ENST00000374170 2107 ntTSL 5 BASIC27.23■■□□□ 1.95
CCHCR1Q8TD31 TMEM9-201ENST00000367330 1959 ntAPPRIS P3 TSL 1 (best) BASIC27.23■■□□□ 1.95
CCHCR1Q8TD31 WASH5P-204ENST00000632292 975 ntBASIC27.23■■□□□ 1.95
CCHCR1Q8TD31 IL17D-201ENST00000304920 1861 ntAPPRIS P1 TSL 1 (best) BASIC27.22■■□□□ 1.95
CCHCR1Q8TD31 PDCD2-215ENST00000614056 1287 ntTSL 2 BASIC27.21■■□□□ 1.95
CCHCR1Q8TD31 ARHGEF7-206ENST00000375741 5525 ntTSL 1 (best) BASIC27.2■■□□□ 1.95
CCHCR1Q8TD31 PQLC1-203ENST00000397778 2555 ntAPPRIS P3 TSL 1 (best) BASIC27.19■■□□□ 1.94
Retrieved 100 of 98,524 protein–RNA pairs in 80.5 ms