Protein–RNA interactions for Protein: Q8C2S0

Usp44, Ubiquitin carboxyl-terminal hydrolase 44, mousemouse

Predictions only

Length 711 aa.

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Protein RNA Prediction (catRAPID) Interaction (Experimental data)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
Usp44Q8C2S0 Tbcel-204ENSMUST00000128959 1535 ntAPPRIS P1 TSL 5 BASIC29.58■■■□□ 2.33
Usp44Q8C2S0 Rundc3a-204ENSMUST00000107105 1861 ntTSL 1 (best) BASIC29.57■■■□□ 2.32
Usp44Q8C2S0 Fbxo6-201ENSMUST00000030858 1346 ntAPPRIS P1 TSL 1 (best) BASIC29.57■■■□□ 2.32
Usp44Q8C2S0 Hexdc-202ENSMUST00000106117 2149 ntAPPRIS P2 TSL 1 (best) BASIC29.57■■■□□ 2.32
Usp44Q8C2S0 Tbx1-201ENSMUST00000009241 1777 ntAPPRIS P1 TSL 1 (best) BASIC29.57■■■□□ 2.32
Usp44Q8C2S0 Kmt5a-202ENSMUST00000100709 1425 ntTSL 1 (best) BASIC29.56■■■□□ 2.32
Usp44Q8C2S0 Rbm17-201ENSMUST00000040314 1599 ntAPPRIS P1 TSL 1 (best) BASIC29.55■■■□□ 2.32
Usp44Q8C2S0 Dcaf15-202ENSMUST00000210279 2199 ntAPPRIS P1 TSL 1 (best) BASIC29.54■■■□□ 2.32
Usp44Q8C2S0 Dpf1-204ENSMUST00000108231 2040 ntTSL 5 BASIC29.54■■■□□ 2.32
Usp44Q8C2S0 Popdc3-201ENSMUST00000019994 1853 ntAPPRIS P1 TSL 1 (best) BASIC29.53■■■□□ 2.32
Usp44Q8C2S0 Adap1-201ENSMUST00000110865 2557 ntAPPRIS P1 TSL 5 BASIC29.52■■■□□ 2.32
Usp44Q8C2S0 Gltp-203ENSMUST00000112214 944 ntTSL 3 BASIC29.52■■■□□ 2.32
Usp44Q8C2S0 BC037032-205ENSMUST00000187080 508 ntTSL 5 BASIC29.51■■■□□ 2.31
Usp44Q8C2S0 A530058N18Rik-208ENSMUST00000131299 1387 ntTSL 2 BASIC29.5■■■□□ 2.31
Usp44Q8C2S0 Aspscr1-201ENSMUST00000026135 1820 ntAPPRIS P1 TSL 1 (best) BASIC29.48■■■□□ 2.31
Usp44Q8C2S0 March2-205ENSMUST00000173015 1418 ntTSL 3 BASIC29.47■■■□□ 2.31
Usp44Q8C2S0 A430072P03Rik-201ENSMUST00000161480 1510 ntTSL 1 (best) BASIC29.47■■■□□ 2.31
Usp44Q8C2S0 Tlx3-201ENSMUST00000037746 1533 ntAPPRIS P1 TSL 1 (best) BASIC29.46■■■□□ 2.31
Usp44Q8C2S0 Tdp2-203ENSMUST00000223804 1136 ntBASIC29.46■■■□□ 2.31
Usp44Q8C2S0 Cldnd1-201ENSMUST00000023426 2147 ntAPPRIS P1 TSL 1 (best) BASIC29.45■■■□□ 2.31
Usp44Q8C2S0 4921531C22Rik-201ENSMUST00000150145 1905 ntTSL 1 (best) BASIC29.44■■■□□ 2.3
Usp44Q8C2S0 Fam241a-201ENSMUST00000057198 1607 ntTSL 1 (best) BASIC29.44■■■□□ 2.3
Usp44Q8C2S0 Srp9-201ENSMUST00000027792 1367 ntAPPRIS P1 TSL 1 (best) BASIC29.43■■■□□ 2.3
Usp44Q8C2S0 Stau2-210ENSMUST00000149320 2214 ntTSL 5 BASIC29.43■■■□□ 2.3
Usp44Q8C2S0 Zfp787-201ENSMUST00000094870 1897 ntAPPRIS P1 TSL 1 (best) BASIC29.43■■■□□ 2.3
Usp44Q8C2S0 Snx3-201ENSMUST00000019939 1401 ntAPPRIS P1 TSL 1 (best) BASIC29.43■■■□□ 2.3
Usp44Q8C2S0 5730480H06Rik-201ENSMUST00000030968 1616 ntAPPRIS P1 TSL 1 (best) BASIC29.42■■■□□ 2.3
Usp44Q8C2S0 Clk2-201ENSMUST00000090927 2128 ntAPPRIS ALT1 TSL 1 (best) BASIC29.41■■■□□ 2.3
Usp44Q8C2S0 Ildr2-205ENSMUST00000193860 2320 ntTSL 1 (best) BASIC29.4■■■□□ 2.3
Usp44Q8C2S0 Gm9397-201ENSMUST00000200125 605 ntBASIC29.4■■■□□ 2.3
Usp44Q8C2S0 Twist1-201ENSMUST00000049089 1628 ntAPPRIS P1 TSL 1 (best) BASIC29.39■■■□□ 2.3
Usp44Q8C2S0 Dtnb-211ENSMUST00000173240 2218 ntTSL 5 BASIC29.39■■■□□ 2.3
Usp44Q8C2S0 Smad2-202ENSMUST00000091831 1645 ntAPPRIS ALT1 TSL 5 BASIC29.38■■■□□ 2.29
Usp44Q8C2S0 Suds3-202ENSMUST00000166397 1694 ntAPPRIS ALT2 TSL 1 (best) BASIC29.38■■■□□ 2.29
Usp44Q8C2S0 Dda1-209ENSMUST00000147642 1865 ntTSL 2 BASIC29.38■■■□□ 2.29
Usp44Q8C2S0 Zfp131-206ENSMUST00000223813 2561 ntAPPRIS P3 BASIC29.36■■■□□ 2.29
Usp44Q8C2S0 Nelfe-204ENSMUST00000173357 1399 ntAPPRIS P1 TSL 1 (best) BASIC29.34■■■□□ 2.29
Usp44Q8C2S0 Capns1-201ENSMUST00000001845 1600 ntAPPRIS P2 TSL 5 BASIC29.34■■■□□ 2.29
Usp44Q8C2S0 Cetn4-201ENSMUST00000071400 1808 ntTSL 5 BASIC29.33■■■□□ 2.29
Usp44Q8C2S0 Mpp6-203ENSMUST00000166318 2222 ntTSL 1 (best) BASIC29.33■■■□□ 2.29
Usp44Q8C2S0 Galnt12-202ENSMUST00000107744 2077 ntTSL 1 (best) BASIC29.32■■■□□ 2.28
Usp44Q8C2S0 A730013G03Rik-202ENSMUST00000195012 2097 ntBASIC29.32■■■□□ 2.28
Usp44Q8C2S0 Gm17494-201ENSMUST00000072769 1800 ntTSL 1 (best) BASIC29.32■■■□□ 2.28
Usp44Q8C2S0 Cabp1-204ENSMUST00000112113 1621 ntTSL 1 (best) BASIC29.31■■■□□ 2.28
Usp44Q8C2S0 1190005I06Rik-201ENSMUST00000123927 844 ntAPPRIS P2 TSL 1 (best) BASIC29.3■■■□□ 2.28
Usp44Q8C2S0 Qrich1-209ENSMUST00000194385 975 ntTSL 2 BASIC29.3■■■□□ 2.28
Usp44Q8C2S0 Clk2-203ENSMUST00000121931 2112 ntAPPRIS ALT1 TSL 5 BASIC29.3■■■□□ 2.28
Usp44Q8C2S0 Arl2bp-201ENSMUST00000034228 2063 ntAPPRIS P1 TSL 1 (best) BASIC29.29■■■□□ 2.28
Usp44Q8C2S0 1810026B05Rik-206ENSMUST00000187421 519 ntTSL 3 BASIC29.29■■■□□ 2.28
Usp44Q8C2S0 Phf23-205ENSMUST00000135814 2214 ntTSL 1 (best) BASIC29.27■■■□□ 2.28
Usp44Q8C2S0 Dazap1-201ENSMUST00000092305 1994 ntAPPRIS ALT1 TSL 1 (best) BASIC29.27■■■□□ 2.28
Usp44Q8C2S0 Il3ra-201ENSMUST00000090591 1614 ntAPPRIS P2 TSL 1 (best) BASIC29.27■■■□□ 2.28
Usp44Q8C2S0 Mcat-201ENSMUST00000061882 1893 ntAPPRIS P1 TSL 1 (best) BASIC29.26■■■□□ 2.27
Usp44Q8C2S0 Stard3nl-210ENSMUST00000222869 1030 ntTSL 5 BASIC29.26■■■□□ 2.27
Usp44Q8C2S0 Amigo1-203ENSMUST00000106659 1360 ntTSL 1 (best) BASIC29.26■■■□□ 2.27
Usp44Q8C2S0 Gm43863-201ENSMUST00000203822 1192 ntBASIC29.24■■■□□ 2.27
Usp44Q8C2S0 2310050C09Rik-201ENSMUST00000163439 1078 ntAPPRIS P1 TSL 2 BASIC29.23■■■□□ 2.27
Usp44Q8C2S0 1810026B05Rik-202ENSMUST00000184554 782 ntTSL 3 BASIC29.23■■■□□ 2.27
Usp44Q8C2S0 Eid2-201ENSMUST00000059596 1392 ntAPPRIS P1 BASIC29.23■■■□□ 2.27
Usp44Q8C2S0 Gm24970-201ENSMUST00000175582 82 ntBASIC29.22■■■□□ 2.27
Usp44Q8C2S0 Gm45855-201ENSMUST00000212546 880 ntBASIC29.21■■■□□ 2.27
Usp44Q8C2S0 Pcgf5-201ENSMUST00000062389 1566 ntTSL 5 BASIC29.19■■■□□ 2.26
Usp44Q8C2S0 Dlx6os2-201ENSMUST00000178206 1354 ntBASIC29.19■■■□□ 2.26
Usp44Q8C2S0 Sugct-202ENSMUST00000220514 1351 ntTSL 1 (best) BASIC29.19■■■□□ 2.26
Usp44Q8C2S0 Dleu2-206ENSMUST00000182537 318 ntTSL 2 BASIC29.19■■■□□ 2.26
Usp44Q8C2S0 Rras2-201ENSMUST00000069449 2275 ntAPPRIS P1 TSL 1 (best) BASIC29.19■■■□□ 2.26
Usp44Q8C2S0 Caap1-201ENSMUST00000030313 2107 ntAPPRIS P1 TSL 1 (best) BASIC29.18■■■□□ 2.26
Usp44Q8C2S0 Zfp358-201ENSMUST00000061508 1999 ntAPPRIS P1 TSL 1 (best) BASIC29.17■■■□□ 2.26
Usp44Q8C2S0 Gsk3a-201ENSMUST00000071739 2260 ntAPPRIS P2 TSL 2 BASIC29.17■■■□□ 2.26
Usp44Q8C2S0 Tmem189-201ENSMUST00000006587 2329 ntAPPRIS P1 TSL 1 (best) BASIC29.16■■■□□ 2.26
Usp44Q8C2S0 Tmem243-201ENSMUST00000115365 1040 ntAPPRIS P1 TSL 2 BASIC29.15■■■□□ 2.26
Usp44Q8C2S0 C1ql1-201ENSMUST00000057849 1473 ntAPPRIS P1 TSL 1 (best) BASIC29.15■■■□□ 2.26
Usp44Q8C2S0 Slc16a8-201ENSMUST00000039752 1806 ntAPPRIS P1 TSL 1 (best) BASIC29.15■■■□□ 2.26
Usp44Q8C2S0 Odc1-201ENSMUST00000171737 2208 ntAPPRIS P1 TSL 1 (best) BASIC29.14■■■□□ 2.26
Usp44Q8C2S0 Amer2-203ENSMUST00000225247 2662 ntBASIC29.14■■■□□ 2.26
Usp44Q8C2S0 Cpsf4-201ENSMUST00000070487 1606 ntTSL 1 (best) BASIC29.14■■■□□ 2.26
Usp44Q8C2S0 1110008F13Rik-201ENSMUST00000029165 1045 ntAPPRIS P1 TSL 1 (best) BASIC29.14■■■□□ 2.26
Usp44Q8C2S0 Nrtn-201ENSMUST00000044752 1023 ntAPPRIS P1 TSL 1 (best) BASIC29.14■■■□□ 2.26
Usp44Q8C2S0 Kdm2a-203ENSMUST00000116571 2413 ntTSL 1 (best) BASIC29.14■■■□□ 2.26
Usp44Q8C2S0 Cldn10-203ENSMUST00000100314 2128 ntAPPRIS P1 TSL 1 (best) BASIC29.14■■■□□ 2.25
Usp44Q8C2S0 Mogs-201ENSMUST00000032114 2780 ntAPPRIS P1 TSL 1 (best) BASIC29.13■■■□□ 2.25
Usp44Q8C2S0 Dazap1-202ENSMUST00000105361 1537 ntAPPRIS ALT1 TSL 1 (best) BASIC29.12■■■□□ 2.25
Usp44Q8C2S0 A530058N18Rik-204ENSMUST00000141209 709 ntTSL 5 BASIC29.12■■■□□ 2.25
Usp44Q8C2S0 Eif4ebp1-201ENSMUST00000033880 1997 ntAPPRIS P1 TSL 1 (best) BASIC29.12■■■□□ 2.25
Usp44Q8C2S0 Tor1a-201ENSMUST00000028200 1401 ntAPPRIS P1 TSL 1 (best) BASIC29.11■■■□□ 2.25
Usp44Q8C2S0 Ssx2ip-202ENSMUST00000106149 2416 ntAPPRIS ALT2 TSL 1 (best) BASIC29.11■■■□□ 2.25
Usp44Q8C2S0 Kansl2-202ENSMUST00000116400 2110 ntAPPRIS P2 TSL 1 (best) BASIC29.11■■■□□ 2.25
Usp44Q8C2S0 Dapk3-201ENSMUST00000047665 1676 ntAPPRIS P1 TSL 5 BASIC29.11■■■□□ 2.25
Usp44Q8C2S0 Tspan33-201ENSMUST00000046750 1994 ntAPPRIS P3 TSL 1 (best) BASIC29.1■■■□□ 2.25
Usp44Q8C2S0 Fam120aos-201ENSMUST00000180775 1780 ntTSL 1 (best) BASIC29.09■■■□□ 2.25
Usp44Q8C2S0 Rab2a-201ENSMUST00000060232 2133 ntAPPRIS P1 TSL 1 (best) BASIC29.08■■■□□ 2.25
Usp44Q8C2S0 Stard10-202ENSMUST00000163799 1723 ntTSL 1 (best) BASIC29.08■■■□□ 2.25
Usp44Q8C2S0 Yrdc-201ENSMUST00000102628 1634 ntAPPRIS P1 TSL 1 (best) BASIC29.07■■■□□ 2.24
Usp44Q8C2S0 E030037K01Rik-201ENSMUST00000180928 1756 ntBASIC29.07■■■□□ 2.24
Usp44Q8C2S0 AC157572.2-201ENSMUST00000226970 908 ntBASIC29.07■■■□□ 2.24
Usp44Q8C2S0 Cdk2ap1-201ENSMUST00000031341 1315 ntAPPRIS P2 TSL 1 (best) BASIC29.07■■■□□ 2.24
Usp44Q8C2S0 Mthfd2l-203ENSMUST00000202781 688 ntTSL 1 (best) BASIC29.06■■■□□ 2.24
Usp44Q8C2S0 Fgf20-201ENSMUST00000034014 1476 ntAPPRIS P1 TSL 1 (best) BASIC29.05■■■□□ 2.24
Usp44Q8C2S0 Rtn4r-201ENSMUST00000059589 1938 ntAPPRIS P1 TSL 1 (best) BASIC29.05■■■□□ 2.24
Usp44Q8C2S0 Hdgf-201ENSMUST00000005017 2245 ntAPPRIS P1 TSL 1 (best) BASIC29.04■■■□□ 2.24
Retrieved 100 of 76,532 protein–RNA pairs in 53.4 ms