Protein–RNA interactions for Protein: Q80TE0

Rpap1, RNA polymerase II-associated protein 1, mousemouse

Predictions only

Length 1,409 aa.

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Protein RNA Prediction (catRAPID) Interaction (Experimental data)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
Rpap1Q80TE0 A430072P03Rik-201ENSMUST00000161480 1510 ntTSL 1 (best) BASIC40.1■■■■■ 4.01
Rpap1Q80TE0 Triobp-206ENSMUST00000130663 1660 ntAPPRIS ALT2 TSL 5 BASIC40.07■■■■■ 4.01
Rpap1Q80TE0 Nelfe-204ENSMUST00000173357 1399 ntAPPRIS P1 TSL 1 (best) BASIC40.07■■■■■ 4.01
Rpap1Q80TE0 A530058N18Rik-208ENSMUST00000131299 1387 ntTSL 2 BASIC40.06■■■■■ 4
Rpap1Q80TE0 Ildr2-207ENSMUST00000195557 1947 ntAPPRIS ALT2 TSL 1 (best) BASIC40.06■■■■■ 4
Rpap1Q80TE0 1700003F12Rik-202ENSMUST00000109709 704 ntAPPRIS ALT2 TSL 3 BASIC40.05■■■■■ 4
Rpap1Q80TE0 1700003F12Rik-201ENSMUST00000045116 704 ntAPPRIS P2 TSL 1 (best) BASIC40.05■■■■■ 4
Rpap1Q80TE0 Nkain2-201ENSMUST00000092602 558 ntBASIC40.05■■■■■ 4
Rpap1Q80TE0 Pitpna-205ENSMUST00000179445 1665 ntAPPRIS ALT1 TSL 5 BASIC40.04■■■■■ 4
Rpap1Q80TE0 Gm30346-201ENSMUST00000218641 1699 ntBASIC40.04■■■■■ 4
Rpap1Q80TE0 Bckdhb-201ENSMUST00000034801 1472 ntAPPRIS P3 TSL 1 (best) BASIC40.04■■■■■ 4
Rpap1Q80TE0 Raly-202ENSMUST00000058089 1747 ntAPPRIS P3 TSL 1 (best) BASIC40.04■■■■■ 4
Rpap1Q80TE0 Phlda3-201ENSMUST00000038945 1435 ntAPPRIS P1 TSL 1 (best) BASIC40.04■■■■■ 4
Rpap1Q80TE0 Gfra4-203ENSMUST00000110234 600 ntTSL 1 (best) BASIC40.03■■■■■ 4
Rpap1Q80TE0 Gfra4-204ENSMUST00000110235 573 ntTSL 1 (best) BASIC40.03■■■■■ 4
Rpap1Q80TE0 Gm26508-201ENSMUST00000181285 1516 ntTSL 5 BASIC40.03■■■■■ 4
Rpap1Q80TE0 Snx3-201ENSMUST00000019939 1401 ntAPPRIS P1 TSL 1 (best) BASIC40■■■■□ 3.99
Rpap1Q80TE0 Rhobtb3-202ENSMUST00000109606 1676 ntTSL 1 (best) BASIC39.99■■■■□ 3.99
Rpap1Q80TE0 Rpsa-204ENSMUST00000217317 1599 ntAPPRIS P1 TSL 1 (best) BASIC39.98■■■■□ 3.99
Rpap1Q80TE0 Cpsf4-201ENSMUST00000070487 1606 ntTSL 1 (best) BASIC39.98■■■■□ 3.99
Rpap1Q80TE0 Dnajb2-202ENSMUST00000082158 1253 ntAPPRIS P1 TSL 5 BASIC39.97■■■■□ 3.99
Rpap1Q80TE0 Ctbp1-206ENSMUST00000201575 2091 ntTSL 1 (best) BASIC39.96■■■■□ 3.99
Rpap1Q80TE0 Ywhaq-202ENSMUST00000103002 2110 ntAPPRIS P1 TSL 1 (best) BASIC39.96■■■■□ 3.99
Rpap1Q80TE0 Endog-201ENSMUST00000015481 1063 ntAPPRIS P1 TSL 1 (best) BASIC39.95■■■■□ 3.99
Rpap1Q80TE0 Iscu-203ENSMUST00000112312 1116 ntTSL 5 BASIC39.92■■■■□ 3.98
Rpap1Q80TE0 Tcfl5-201ENSMUST00000037877 2225 ntAPPRIS P1 TSL 1 (best) BASIC39.92■■■■□ 3.98
Rpap1Q80TE0 Amigo1-203ENSMUST00000106659 1360 ntTSL 1 (best) BASIC39.91■■■■□ 3.98
Rpap1Q80TE0 Rbm17-201ENSMUST00000040314 1599 ntAPPRIS P1 TSL 1 (best) BASIC39.89■■■■□ 3.98
Rpap1Q80TE0 AC163623.1-201ENSMUST00000213738 727 ntAPPRIS P1 TSL 3 BASIC39.89■■■■□ 3.98
Rpap1Q80TE0 Pm20d2-201ENSMUST00000098181 1445 ntAPPRIS P1 TSL 5 BASIC39.88■■■■□ 3.98
Rpap1Q80TE0 Gm28592-201ENSMUST00000186844 741 ntTSL 5 BASIC39.87■■■■□ 3.97
Rpap1Q80TE0 5730480H06Rik-201ENSMUST00000030968 1616 ntAPPRIS P1 TSL 1 (best) BASIC39.86■■■■□ 3.97
Rpap1Q80TE0 Stk24-201ENSMUST00000079817 2676 ntAPPRIS P1 TSL 1 (best) BASIC39.86■■■■□ 3.97
Rpap1Q80TE0 Tspan3-201ENSMUST00000034876 1716 ntAPPRIS P1 TSL 1 (best) BASIC39.85■■■■□ 3.97
Rpap1Q80TE0 Osbpl1a-209ENSMUST00000122175 1203 ntTSL 1 (best) BASIC39.83■■■■□ 3.97
Rpap1Q80TE0 Ccm2-201ENSMUST00000000388 1858 ntAPPRIS P1 TSL 1 (best) BASIC39.82■■■■□ 3.97
Rpap1Q80TE0 Gm7432-201ENSMUST00000210343 879 ntBASIC39.82■■■■□ 3.96
Rpap1Q80TE0 Smarcad1-211ENSMUST00000204696 734 ntTSL 1 (best) BASIC39.81■■■■□ 3.96
Rpap1Q80TE0 Sugct-202ENSMUST00000220514 1351 ntTSL 1 (best) BASIC39.78■■■■□ 3.96
Rpap1Q80TE0 Gm2415-204ENSMUST00000190235 2004 ntBASIC39.78■■■■□ 3.96
Rpap1Q80TE0 Msantd2-201ENSMUST00000048604 2291 ntAPPRIS P1 TSL 1 (best) BASIC39.76■■■■□ 3.96
Rpap1Q80TE0 Cacfd1-203ENSMUST00000114005 1286 ntTSL 1 (best) BASIC39.75■■■■□ 3.95
Rpap1Q80TE0 Raly-204ENSMUST00000116389 1759 ntAPPRIS ALT2 TSL 5 BASIC39.75■■■■□ 3.95
Rpap1Q80TE0 1110065P20Rik-201ENSMUST00000106190 968 ntAPPRIS P1 TSL 2 BASIC39.74■■■■□ 3.95
Rpap1Q80TE0 Fkbp8-202ENSMUST00000119353 1720 ntAPPRIS ALT2 TSL 1 (best) BASIC39.73■■■■□ 3.95
Rpap1Q80TE0 Zmynd12-201ENSMUST00000094819 1464 ntAPPRIS P1 TSL 1 (best) BASIC39.71■■■■□ 3.95
Rpap1Q80TE0 Fcnaos-201ENSMUST00000127642 1351 ntTSL 1 (best) BASIC39.71■■■■□ 3.95
Rpap1Q80TE0 Eif4e2-203ENSMUST00000113230 1569 ntTSL 1 (best) BASIC39.71■■■■□ 3.95
Rpap1Q80TE0 Pcbd2-201ENSMUST00000021958 544 ntTSL 1 (best) BASIC39.7■■■■□ 3.95
Rpap1Q80TE0 Fgf20-201ENSMUST00000034014 1476 ntAPPRIS P1 TSL 1 (best) BASIC39.69■■■■□ 3.94
Rpap1Q80TE0 Tmco6-201ENSMUST00000007046 1817 ntAPPRIS P1 TSL 1 (best) BASIC39.68■■■■□ 3.94
Rpap1Q80TE0 Tmbim4-204ENSMUST00000134797 486 ntTSL 1 (best) BASIC39.65■■■■□ 3.94
Rpap1Q80TE0 Snrpe-202ENSMUST00000164574 597 ntTSL 3 BASIC39.65■■■■□ 3.94
Rpap1Q80TE0 Gnas-207ENSMUST00000109085 1789 ntAPPRIS ALT1 TSL 1 (best) BASIC39.64■■■■□ 3.94
Rpap1Q80TE0 Ppa2-201ENSMUST00000029644 1226 ntAPPRIS P3 TSL 1 (best) BASIC39.64■■■■□ 3.94
Rpap1Q80TE0 Asf1a-205ENSMUST00000219282 1150 ntTSL 5 BASIC39.63■■■■□ 3.93
Rpap1Q80TE0 A530058N18Rik-203ENSMUST00000135729 1405 ntTSL 1 (best) BASIC39.63■■■■□ 3.93
Rpap1Q80TE0 Suds3-202ENSMUST00000166397 1694 ntAPPRIS ALT2 TSL 1 (best) BASIC39.61■■■■□ 3.93
Rpap1Q80TE0 Flt3l-211ENSMUST00000211429 1358 ntAPPRIS ALT2 TSL 1 (best) BASIC39.61■■■■□ 3.93
Rpap1Q80TE0 Hmgn3-202ENSMUST00000162246 983 ntAPPRIS P4 TSL 1 (best) BASIC39.59■■■■□ 3.93
Rpap1Q80TE0 Gm11599-201ENSMUST00000118720 878 ntBASIC39.57■■■■□ 3.93
Rpap1Q80TE0 Cabp1-204ENSMUST00000112113 1621 ntTSL 1 (best) BASIC39.57■■■■□ 3.93
Rpap1Q80TE0 Hspd1-201ENSMUST00000027123 2423 ntAPPRIS P1 TSL 1 (best) BASIC39.57■■■■□ 3.92
Rpap1Q80TE0 Bcl7b-202ENSMUST00000111187 564 ntTSL 1 (best) BASIC39.57■■■■□ 3.92
Rpap1Q80TE0 Gpr137c-205ENSMUST00000227009 771 ntAPPRIS ALT2 BASIC39.57■■■■□ 3.92
Rpap1Q80TE0 Cebpb-201ENSMUST00000070642 1504 ntAPPRIS P1 BASIC39.56■■■■□ 3.92
Rpap1Q80TE0 A030003K21Rik-201ENSMUST00000222600 830 ntAPPRIS P1 BASIC39.56■■■■□ 3.92
Rpap1Q80TE0 Pard6a-203ENSMUST00000211888 1179 ntTSL 1 (best) BASIC39.55■■■■□ 3.92
Rpap1Q80TE0 Gm28052-201ENSMUST00000150388 380 ntTSL 3 BASIC39.53■■■■□ 3.92
Rpap1Q80TE0 Tlx3-201ENSMUST00000037746 1533 ntAPPRIS P1 TSL 1 (best) BASIC39.52■■■■□ 3.92
Rpap1Q80TE0 Rheb-201ENSMUST00000030787 1784 ntAPPRIS P1 TSL 1 (best) BASIC39.52■■■■□ 3.92
Rpap1Q80TE0 Dlx4-201ENSMUST00000021241 2282 ntAPPRIS P1 TSL 1 (best) BASIC39.52■■■■□ 3.92
Rpap1Q80TE0 Rab43-202ENSMUST00000032135 1262 ntTSL 1 (best) BASIC39.51■■■■□ 3.92
Rpap1Q80TE0 Ccdc50-202ENSMUST00000096127 1096 ntTSL 1 (best) BASIC39.51■■■■□ 3.92
Rpap1Q80TE0 Ankrd60-202ENSMUST00000119453 1084 ntAPPRIS P2 TSL 2 BASIC39.5■■■■□ 3.91
Rpap1Q80TE0 Msi2-202ENSMUST00000107908 695 ntTSL 5 BASIC39.48■■■■□ 3.91
Rpap1Q80TE0 P2rx2-205ENSMUST00000200037 1569 ntAPPRIS ALT2 TSL 1 (best) BASIC39.46■■■■□ 3.91
Rpap1Q80TE0 1110008P14Rik-201ENSMUST00000048792 680 ntAPPRIS P1 TSL 1 (best) BASIC39.46■■■■□ 3.91
Rpap1Q80TE0 Gm6658-202ENSMUST00000209493 1885 ntBASIC39.44■■■■□ 3.9
Rpap1Q80TE0 Dbp-204ENSMUST00000211513 1156 ntTSL 5 BASIC39.43■■■■□ 3.9
Rpap1Q80TE0 Rexo2-210ENSMUST00000217037 609 ntTSL 3 BASIC39.43■■■■□ 3.9
Rpap1Q80TE0 Gm26588-201ENSMUST00000181064 2098 ntTSL 1 (best) BASIC39.43■■■■□ 3.9
Rpap1Q80TE0 Popdc3-201ENSMUST00000019994 1853 ntAPPRIS P1 TSL 1 (best) BASIC39.42■■■■□ 3.9
Rpap1Q80TE0 Gas1-202ENSMUST00000223933 1155 ntAPPRIS P2 BASIC39.41■■■■□ 3.9
Rpap1Q80TE0 Mapkapk5-201ENSMUST00000031410 2234 ntAPPRIS P2 TSL 1 (best) BASIC39.41■■■■□ 3.9
Rpap1Q80TE0 6330420H09Rik-201ENSMUST00000211371 1316 ntTSL 1 (best) BASIC39.41■■■■□ 3.9
Rpap1Q80TE0 Gm11175-201ENSMUST00000116172 543 ntBASIC39.4■■■■□ 3.9
Rpap1Q80TE0 Serpinb6a-201ENSMUST00000017188 1504 ntTSL 1 (best) BASIC39.39■■■■□ 3.9
Rpap1Q80TE0 Mrps7-201ENSMUST00000058109 1962 ntAPPRIS P1 TSL 1 (best) BASIC39.36■■■■□ 3.89
Rpap1Q80TE0 Mapkap1-201ENSMUST00000113123 1530 ntTSL 5 BASIC39.36■■■■□ 3.89
Rpap1Q80TE0 Sntb1-202ENSMUST00000110200 1225 ntTSL 1 (best) BASIC39.35■■■■□ 3.89
Rpap1Q80TE0 C2cd4b-201ENSMUST00000171652 1327 ntAPPRIS P1 TSL 1 (best) BASIC39.34■■■■□ 3.89
Rpap1Q80TE0 Pcgf5-201ENSMUST00000062389 1566 ntTSL 5 BASIC39.34■■■■□ 3.89
Rpap1Q80TE0 Ell2-205ENSMUST00000222194 434 ntTSL 3 BASIC39.33■■■■□ 3.89
Rpap1Q80TE0 Tpm1-216ENSMUST00000113707 1898 ntTSL 1 (best) BASIC39.32■■■■□ 3.89
Rpap1Q80TE0 Dapk3-202ENSMUST00000178422 1730 ntAPPRIS P1 TSL 1 (best) BASIC39.32■■■■□ 3.88
Rpap1Q80TE0 Pfn2-202ENSMUST00000119344 1879 ntTSL 1 (best) BASIC39.3■■■■□ 3.88
Rpap1Q80TE0 Rpl31-203ENSMUST00000179954 630 ntAPPRIS P1 TSL 1 (best) BASIC39.3■■■■□ 3.88
Rpap1Q80TE0 Gm9887-201ENSMUST00000053451 624 ntAPPRIS P1 BASIC39.3■■■■□ 3.88
Rpap1Q80TE0 Dennd1b-209ENSMUST00000200533 1853 ntTSL 1 (best) BASIC39.29■■■■□ 3.88
Retrieved 100 of 76,532 protein–RNA pairs in 17.8 ms