Protein–RNA interactions for Protein: Q5R1F6

Trav5d-4, T cell receptor alpha variable 5D-4 (Fragment), mousemouse

Predictions only

Length 114 aa.

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Protein RNA Prediction (catRAPID) Interaction (Experimental data)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
Trav5d-4Q5R1F6 Rab2a-201ENSMUST00000060232 2133 ntAPPRIS P1 TSL 1 (best) BASIC21.24■□□□□ 0.99
Trav5d-4Q5R1F6 Dcaf15-202ENSMUST00000210279 2199 ntAPPRIS P1 TSL 1 (best) BASIC21.24■□□□□ 0.99
Trav5d-4Q5R1F6 Hoxa13-201ENSMUST00000047993 1309 ntAPPRIS ALT2 TSL 5 BASIC21.23■□□□□ 0.99
Trav5d-4Q5R1F6 Gm17494-201ENSMUST00000072769 1800 ntTSL 1 (best) BASIC21.22■□□□□ 0.99
Trav5d-4Q5R1F6 Ssx2ip-202ENSMUST00000106149 2416 ntAPPRIS ALT2 TSL 1 (best) BASIC21.22■□□□□ 0.99
Trav5d-4Q5R1F6 Rbms1-202ENSMUST00000112509 1806 ntTSL 1 (best) BASIC21.22■□□□□ 0.99
Trav5d-4Q5R1F6 Triobp-206ENSMUST00000130663 1660 ntAPPRIS ALT2 TSL 5 BASIC21.21■□□□□ 0.99
Trav5d-4Q5R1F6 Aard-201ENSMUST00000090025 1348 ntAPPRIS P1 TSL 1 (best) BASIC21.21■□□□□ 0.99
Trav5d-4Q5R1F6 Cnnm3-202ENSMUST00000097776 5292 ntAPPRIS ALT2 TSL 1 (best) BASIC21.2■□□□□ 0.98
Trav5d-4Q5R1F6 Fam60a-203ENSMUST00000111562 906 ntAPPRIS P1 TSL 3 BASIC21.2■□□□□ 0.98
Trav5d-4Q5R1F6 1700028N14Rik-201ENSMUST00000139621 747 ntTSL 1 (best) BASIC21.2■□□□□ 0.98
Trav5d-4Q5R1F6 Macrod1-201ENSMUST00000040261 1274 ntAPPRIS P1 TSL 1 (best) BASIC21.2■□□□□ 0.98
Trav5d-4Q5R1F6 Phf23-205ENSMUST00000135814 2214 ntTSL 1 (best) BASIC21.2■□□□□ 0.98
Trav5d-4Q5R1F6 Cetn4-201ENSMUST00000071400 1808 ntTSL 5 BASIC21.2■□□□□ 0.98
Trav5d-4Q5R1F6 Znrf3-202ENSMUST00000143746 1022 ntTSL 1 (best) BASIC21.19■□□□□ 0.98
Trav5d-4Q5R1F6 Galnt12-202ENSMUST00000107744 2077 ntTSL 1 (best) BASIC21.19■□□□□ 0.98
Trav5d-4Q5R1F6 Aspscr1-201ENSMUST00000026135 1820 ntAPPRIS P1 TSL 1 (best) BASIC21.18■□□□□ 0.98
Trav5d-4Q5R1F6 Dda1-209ENSMUST00000147642 1865 ntTSL 2 BASIC21.18■□□□□ 0.98
Trav5d-4Q5R1F6 Pradc1-202ENSMUST00000113770 610 ntTSL 1 (best) BASIC21.17■□□□□ 0.98
Trav5d-4Q5R1F6 Tmeff1-202ENSMUST00000123476 1224 ntAPPRIS P1 TSL 1 (best) BASIC21.17■□□□□ 0.98
Trav5d-4Q5R1F6 Ccdc122-202ENSMUST00000095625 1195 ntAPPRIS ALT2 TSL 1 (best) BASIC21.17■□□□□ 0.98
Trav5d-4Q5R1F6 Crem-227ENSMUST00000149803 1422 ntTSL 1 (best) BASIC21.17■□□□□ 0.98
Trav5d-4Q5R1F6 Fam241a-201ENSMUST00000057198 1607 ntTSL 1 (best) BASIC21.16■□□□□ 0.98
Trav5d-4Q5R1F6 A530058N18Rik-207ENSMUST00000152254 1211 ntTSL 1 (best) BASIC21.16■□□□□ 0.98
Trav5d-4Q5R1F6 Srsf9-201ENSMUST00000031513 1162 ntAPPRIS P1 TSL 1 (best) BASIC21.16■□□□□ 0.98
Trav5d-4Q5R1F6 Irx4-201ENSMUST00000022095 2589 ntAPPRIS P1 TSL 1 (best) BASIC21.16■□□□□ 0.98
Trav5d-4Q5R1F6 Rras2-201ENSMUST00000069449 2275 ntAPPRIS P1 TSL 1 (best) BASIC21.15■□□□□ 0.98
Trav5d-4Q5R1F6 Stau2-210ENSMUST00000149320 2214 ntTSL 5 BASIC21.14■□□□□ 0.98
Trav5d-4Q5R1F6 Hdgf-201ENSMUST00000005017 2245 ntAPPRIS P1 TSL 1 (best) BASIC21.14■□□□□ 0.98
Trav5d-4Q5R1F6 Popdc3-201ENSMUST00000019994 1853 ntAPPRIS P1 TSL 1 (best) BASIC21.14■□□□□ 0.97
Trav5d-4Q5R1F6 Tbcel-204ENSMUST00000128959 1535 ntAPPRIS P1 TSL 5 BASIC21.14■□□□□ 0.97
Trav5d-4Q5R1F6 Fkbp8-202ENSMUST00000119353 1720 ntAPPRIS ALT2 TSL 1 (best) BASIC21.13■□□□□ 0.97
Trav5d-4Q5R1F6 Egr3-201ENSMUST00000035908 1509 ntAPPRIS ALT1 TSL 1 (best) BASIC21.13■□□□□ 0.97
Trav5d-4Q5R1F6 Gm527-201ENSMUST00000058135 1468 ntAPPRIS P1 TSL 1 (best) BASIC21.13■□□□□ 0.97
Trav5d-4Q5R1F6 A730013G03Rik-202ENSMUST00000195012 2097 ntBASIC21.13■□□□□ 0.97
Trav5d-4Q5R1F6 CT030161.2-201ENSMUST00000218666 735 ntTSL 3 BASIC21.12■□□□□ 0.97
Trav5d-4Q5R1F6 Mypop-203ENSMUST00000131087 1951 ntAPPRIS P1 TSL 5 BASIC21.11■□□□□ 0.97
Trav5d-4Q5R1F6 Smad2-202ENSMUST00000091831 1645 ntAPPRIS ALT1 TSL 5 BASIC21.11■□□□□ 0.97
Trav5d-4Q5R1F6 Caap1-201ENSMUST00000030313 2107 ntAPPRIS P1 TSL 1 (best) BASIC21.1■□□□□ 0.97
Trav5d-4Q5R1F6 Gm960-202ENSMUST00000177696 2262 ntAPPRIS P2 TSL 5 BASIC21.1■□□□□ 0.97
Trav5d-4Q5R1F6 Dazap1-201ENSMUST00000092305 1994 ntAPPRIS ALT1 TSL 1 (best) BASIC21.1■□□□□ 0.97
Trav5d-4Q5R1F6 Zfp358-201ENSMUST00000061508 1999 ntAPPRIS P1 TSL 1 (best) BASIC21.09■□□□□ 0.97
Trav5d-4Q5R1F6 Kmt5a-202ENSMUST00000100709 1425 ntTSL 1 (best) BASIC21.09■□□□□ 0.97
Trav5d-4Q5R1F6 Eif2ak3-204ENSMUST00000162950 927 ntTSL 1 (best) BASIC21.08■□□□□ 0.97
Trav5d-4Q5R1F6 Ppp1r14c-202ENSMUST00000217573 2013 ntTSL 1 (best) BASIC21.08■□□□□ 0.97
Trav5d-4Q5R1F6 Rbm17-201ENSMUST00000040314 1599 ntAPPRIS P1 TSL 1 (best) BASIC21.08■□□□□ 0.97
Trav5d-4Q5R1F6 Gm10762-201ENSMUST00000099385 1133 ntAPPRIS P1 BASIC21.08■□□□□ 0.97
Trav5d-4Q5R1F6 Gm15672-201ENSMUST00000151512 1354 ntTSL 1 (best) BASIC21.08■□□□□ 0.96
Trav5d-4Q5R1F6 Gsk3a-202ENSMUST00000108411 2248 ntAPPRIS ALT2 TSL 5 BASIC21.07■□□□□ 0.96
Trav5d-4Q5R1F6 Nucks1-203ENSMUST00000189946 2375 ntAPPRIS ALT2 TSL 1 (best) BASIC21.07■□□□□ 0.96
Trav5d-4Q5R1F6 A430072P03Rik-201ENSMUST00000161480 1510 ntTSL 1 (best) BASIC21.04■□□□□ 0.96
Trav5d-4Q5R1F6 Hrh3-208ENSMUST00000171736 906 ntTSL 5 BASIC21.04■□□□□ 0.96
Trav5d-4Q5R1F6 Mef2a-201ENSMUST00000032776 2476 ntAPPRIS P1 TSL 1 (best) BASIC21.03■□□□□ 0.96
Trav5d-4Q5R1F6 Junos-204ENSMUST00000128094 830 ntTSL 1 (best) BASIC21.03■□□□□ 0.96
Trav5d-4Q5R1F6 Grb2-202ENSMUST00000106495 2041 ntTSL 5 BASIC21.03■□□□□ 0.96
Trav5d-4Q5R1F6 A530058N18Rik-208ENSMUST00000131299 1387 ntTSL 2 BASIC21.02■□□□□ 0.96
Trav5d-4Q5R1F6 5730480H06Rik-201ENSMUST00000030968 1616 ntAPPRIS P1 TSL 1 (best) BASIC21.02■□□□□ 0.96
Trav5d-4Q5R1F6 Tlx3-201ENSMUST00000037746 1533 ntAPPRIS P1 TSL 1 (best) BASIC21.02■□□□□ 0.96
Trav5d-4Q5R1F6 Plekha3-201ENSMUST00000111920 2534 ntAPPRIS P1 TSL 1 (best) BASIC21.02■□□□□ 0.95
Trav5d-4Q5R1F6 Fbxo6-201ENSMUST00000030858 1346 ntAPPRIS P1 TSL 1 (best) BASIC21.02■□□□□ 0.95
Trav5d-4Q5R1F6 Terf2-201ENSMUST00000068388 1915 ntAPPRIS ALT2 TSL 1 (best) BASIC21.01■□□□□ 0.95
Trav5d-4Q5R1F6 Cbln1-201ENSMUST00000034076 2800 ntAPPRIS P1 TSL 1 (best) BASIC21■□□□□ 0.95
Trav5d-4Q5R1F6 Sec63-201ENSMUST00000019937 6032 ntAPPRIS P1 TSL 1 (best) BASIC21■□□□□ 0.95
Trav5d-4Q5R1F6 Rtn2-201ENSMUST00000032559 1990 ntAPPRIS P3 TSL 1 (best) BASIC21■□□□□ 0.95
Trav5d-4Q5R1F6 Kansl2-202ENSMUST00000116400 2110 ntAPPRIS P2 TSL 1 (best) BASIC20.99■□□□□ 0.95
Trav5d-4Q5R1F6 Mcat-201ENSMUST00000061882 1893 ntAPPRIS P1 TSL 1 (best) BASIC20.99■□□□□ 0.95
Trav5d-4Q5R1F6 Odc1-201ENSMUST00000171737 2208 ntAPPRIS P1 TSL 1 (best) BASIC20.99■□□□□ 0.95
Trav5d-4Q5R1F6 Suds3-202ENSMUST00000166397 1694 ntAPPRIS ALT2 TSL 1 (best) BASIC20.99■□□□□ 0.95
Trav5d-4Q5R1F6 Snx3-201ENSMUST00000019939 1401 ntAPPRIS P1 TSL 1 (best) BASIC20.98■□□□□ 0.95
Trav5d-4Q5R1F6 Klhl25-205ENSMUST00000206019 2299 ntAPPRIS P1 TSL 1 (best) BASIC20.97■□□□□ 0.95
Trav5d-4Q5R1F6 Eif4ebp1-201ENSMUST00000033880 1997 ntAPPRIS P1 TSL 1 (best) BASIC20.97■□□□□ 0.95
Trav5d-4Q5R1F6 Cldn10-203ENSMUST00000100314 2128 ntAPPRIS P1 TSL 1 (best) BASIC20.96■□□□□ 0.95
Trav5d-4Q5R1F6 Arhgap22-201ENSMUST00000111955 2148 ntTSL 1 (best) BASIC20.96■□□□□ 0.95
Trav5d-4Q5R1F6 Dapk3-201ENSMUST00000047665 1676 ntAPPRIS P1 TSL 5 BASIC20.96■□□□□ 0.95
Trav5d-4Q5R1F6 1700016A09Rik-201ENSMUST00000192004 835 ntBASIC20.95■□□□□ 0.94
Trav5d-4Q5R1F6 Dtnb-203ENSMUST00000164578 2355 ntTSL 1 (best) BASIC20.95■□□□□ 0.94
Trav5d-4Q5R1F6 St7-202ENSMUST00000052113 2046 ntAPPRIS P1 TSL 1 (best) BASIC20.94■□□□□ 0.94
Trav5d-4Q5R1F6 Dedd-201ENSMUST00000064950 1618 ntAPPRIS P1 TSL 1 (best) BASIC20.94■□□□□ 0.94
Trav5d-4Q5R1F6 Zfp131-205ENSMUST00000223812 663 ntBASIC20.93■□□□□ 0.94
Trav5d-4Q5R1F6 Srp9-201ENSMUST00000027792 1367 ntAPPRIS P1 TSL 1 (best) BASIC20.93■□□□□ 0.94
Trav5d-4Q5R1F6 Cabp1-204ENSMUST00000112113 1621 ntTSL 1 (best) BASIC20.93■□□□□ 0.94
Trav5d-4Q5R1F6 E030037K01Rik-201ENSMUST00000180928 1756 ntBASIC20.92■□□□□ 0.94
Trav5d-4Q5R1F6 Slc16a8-201ENSMUST00000039752 1806 ntAPPRIS P1 TSL 1 (best) BASIC20.92■□□□□ 0.94
Trav5d-4Q5R1F6 2410017I17Rik-202ENSMUST00000090537 2053 ntTSL 2 BASIC20.92■□□□□ 0.94
Trav5d-4Q5R1F6 Acvr2b-202ENSMUST00000165044 2093 ntTSL 2 BASIC20.92■□□□□ 0.94
Trav5d-4Q5R1F6 Mpp6-202ENSMUST00000036236 2161 ntAPPRIS P1 TSL 1 (best) BASIC20.92■□□□□ 0.94
Trav5d-4Q5R1F6 Nelfe-204ENSMUST00000173357 1399 ntAPPRIS P1 TSL 1 (best) BASIC20.91■□□□□ 0.94
Trav5d-4Q5R1F6 Nr2f6-201ENSMUST00000002466 2218 ntAPPRIS P1 TSL 1 (best) BASIC20.91■□□□□ 0.94
Trav5d-4Q5R1F6 Twist1-201ENSMUST00000049089 1628 ntAPPRIS P1 TSL 1 (best) BASIC20.91■□□□□ 0.94
Trav5d-4Q5R1F6 Rtn4r-201ENSMUST00000059589 1938 ntAPPRIS P1 TSL 1 (best) BASIC20.91■□□□□ 0.94
Trav5d-4Q5R1F6 Stard10-202ENSMUST00000163799 1723 ntTSL 1 (best) BASIC20.9■□□□□ 0.94
Trav5d-4Q5R1F6 Mat2b-201ENSMUST00000040167 1949 ntAPPRIS P1 TSL 1 (best) BASIC20.9■□□□□ 0.94
Trav5d-4Q5R1F6 Sugct-202ENSMUST00000220514 1351 ntTSL 1 (best) BASIC20.89■□□□□ 0.93
Trav5d-4Q5R1F6 En1-201ENSMUST00000079721 2624 ntAPPRIS P1 TSL 1 (best) BASIC20.89■□□□□ 0.93
Trav5d-4Q5R1F6 Rcor2-201ENSMUST00000066646 2801 ntAPPRIS P1 TSL 1 (best) BASIC20.88■□□□□ 0.93
Trav5d-4Q5R1F6 Tspan33-201ENSMUST00000046750 1994 ntAPPRIS P3 TSL 1 (best) BASIC20.88■□□□□ 0.93
Trav5d-4Q5R1F6 March2-205ENSMUST00000173015 1418 ntTSL 3 BASIC20.87■□□□□ 0.93
Trav5d-4Q5R1F6 Fam120aos-201ENSMUST00000180775 1780 ntTSL 1 (best) BASIC20.87■□□□□ 0.93
Trav5d-4Q5R1F6 Lemd2-201ENSMUST00000055117 2595 ntAPPRIS P1 TSL 1 (best) BASIC20.87■□□□□ 0.93
Trav5d-4Q5R1F6 Fezf2-202ENSMUST00000224023 1917 ntBASIC20.87■□□□□ 0.93
Retrieved 100 of 76,532 protein–RNA pairs in 20.5 ms