Protein–RNA interactions for Protein: P28068

HLA-DMB, HLA class II histocompatibility antigen, DM beta chain, humanhuman

Predictions only

Length 263 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
HLA-DMBP28068 HES7-202ENST00000541682 1674 ntAPPRIS ALT1 TSL 1 (best) BASIC20.22■□□□□ 0.83
HLA-DMBP28068 KCTD17-202ENST00000403888 1763 ntAPPRIS ALT2 TSL 1 (best) BASIC20.21■□□□□ 0.83
HLA-DMBP28068 PDPK1-203ENST00000389224 2416 ntTSL 2 BASIC20.21■□□□□ 0.83
HLA-DMBP28068 CERS2-205ENST00000368954 2505 ntAPPRIS P1 TSL 1 (best) BASIC20.21■□□□□ 0.83
HLA-DMBP28068 GAL3ST1-205ENST00000406361 1819 ntAPPRIS P1 TSL 2 BASIC20.2■□□□□ 0.82
HLA-DMBP28068 TPRA1-202ENST00000355552 1933 ntAPPRIS P1 TSL 1 (best) BASIC20.2■□□□□ 0.82
HLA-DMBP28068 INAFM1-201ENST00000552360 1255 ntAPPRIS P1 BASIC20.2■□□□□ 0.82
HLA-DMBP28068 RAB26-201ENST00000210187 1675 ntAPPRIS P1 TSL 1 (best) BASIC20.19■□□□□ 0.82
HLA-DMBP28068 TPI1-201ENST00000229270 1763 ntTSL 1 (best) BASIC20.18■□□□□ 0.82
HLA-DMBP28068 VWA1-201ENST00000338660 2147 ntTSL 2 BASIC20.18■□□□□ 0.82
HLA-DMBP28068 LRRC61-202ENST00000359623 1877 ntAPPRIS P1 TSL 2 BASIC20.18■□□□□ 0.82
HLA-DMBP28068 AC025431.1-201ENST00000559684 874 ntTSL 3 BASIC20.18■□□□□ 0.82
HLA-DMBP28068 RARRES2P7-201ENST00000567349 469 ntBASIC20.18■□□□□ 0.82
HLA-DMBP28068 CCDC88C-205ENST00000553403 1651 ntTSL 1 (best) BASIC20.17■□□□□ 0.82
HLA-DMBP28068 LFNG-203ENST00000359574 1377 ntAPPRIS ALT1 TSL 1 (best) BASIC20.17■□□□□ 0.82
HLA-DMBP28068 RTN4R-201ENST00000043402 2157 ntAPPRIS P2 TSL 1 (best) BASIC20.17■□□□□ 0.82
HLA-DMBP28068 NEUROG2-201ENST00000313341 2287 ntAPPRIS P1 TSL 1 (best) BASIC20.16■□□□□ 0.82
HLA-DMBP28068 TSPAN11-203ENST00000545802 1649 ntTSL 1 (best) BASIC20.16■□□□□ 0.82
HLA-DMBP28068 KCNQ5-204ENST00000370392 1469 ntTSL 1 (best) BASIC20.15■□□□□ 0.82
HLA-DMBP28068 AGAP1-202ENST00000336665 5427 ntAPPRIS P3 TSL 1 (best) BASIC20.15■□□□□ 0.82
HLA-DMBP28068 SECTM1-201ENST00000269389 2235 ntAPPRIS P2 TSL 1 (best) BASIC20.15■□□□□ 0.82
HLA-DMBP28068 WDSUB1-205ENST00000409990 1920 ntAPPRIS P1 TSL 2 BASIC20.14■□□□□ 0.81
HLA-DMBP28068 YAP1-204ENST00000526343 2393 ntTSL 5 BASIC20.14■□□□□ 0.81
HLA-DMBP28068 TPRA1-209ENST00000489960 1903 ntAPPRIS P1 TSL 5 BASIC20.14■□□□□ 0.81
HLA-DMBP28068 KLF16-203ENST00000592313 508 ntTSL 3 BASIC20.13■□□□□ 0.81
HLA-DMBP28068 AL135925.1-201ENST00000605920 1701 ntBASIC20.13■□□□□ 0.81
HLA-DMBP28068 RNF150-204ENST00000507500 1530 ntTSL 1 (best) BASIC20.12■□□□□ 0.81
HLA-DMBP28068 FZD2-201ENST00000315323 2112 ntAPPRIS P1 BASIC20.12■□□□□ 0.81
HLA-DMBP28068 AGFG1-205ENST00000409979 2089 ntAPPRIS ALT1 TSL 5 BASIC20.12■□□□□ 0.81
HLA-DMBP28068 SLC52A2-201ENST00000329994 1896 ntAPPRIS P1 TSL 1 (best) BASIC20.11■□□□□ 0.81
HLA-DMBP28068 TP53I13-201ENST00000301057 1530 ntAPPRIS P2 TSL 1 (best) BASIC20.11■□□□□ 0.81
HLA-DMBP28068 EFNA1-202ENST00000368407 1926 ntAPPRIS P1 TSL 1 (best) BASIC20.1■□□□□ 0.81
HLA-DMBP28068 AVEN-201ENST00000306730 1605 ntAPPRIS P1 TSL 1 (best) BASIC20.1■□□□□ 0.81
HLA-DMBP28068 ZIC2-201ENST00000376335 2983 ntAPPRIS P1 TSL 1 (best) BASIC20.1■□□□□ 0.81
HLA-DMBP28068 ARTN-204ENST00000438616 889 ntTSL 1 (best) BASIC20.1■□□□□ 0.81
HLA-DMBP28068 JMJD8-216ENST00000609261 1901 ntAPPRIS ALT2 TSL 1 (best) BASIC20.1■□□□□ 0.81
HLA-DMBP28068 GLRX5-201ENST00000331334 1564 ntAPPRIS P1 TSL 1 (best) BASIC20.09■□□□□ 0.81
HLA-DMBP28068 WASH5P-204ENST00000632292 975 ntBASIC20.09■□□□□ 0.81
HLA-DMBP28068 FOXQ1-201ENST00000296839 2309 ntAPPRIS P1 BASIC20.09■□□□□ 0.81
HLA-DMBP28068 AL133380.1-201ENST00000506013 324 ntBASIC20.08■□□□□ 0.81
HLA-DMBP28068 GUSB-202ENST00000421103 1742 ntTSL 2 BASIC20.07■□□□□ 0.8
HLA-DMBP28068 AC079305.1-201ENST00000428541 499 ntTSL 3 BASIC20.07■□□□□ 0.8
HLA-DMBP28068 AC009133.5-201ENST00000562594 473 ntTSL 4 BASIC20.07■□□□□ 0.8
HLA-DMBP28068 FAAP20-204ENST00000400919 1413 ntTSL 3 BASIC20.07■□□□□ 0.8
HLA-DMBP28068 PCYT2-206ENST00000571105 1628 ntTSL 5 BASIC20.06■□□□□ 0.8
HLA-DMBP28068 ARHGAP22-202ENST00000374170 2107 ntTSL 5 BASIC20.06■□□□□ 0.8
HLA-DMBP28068 FOXE3-201ENST00000335071 1981 ntAPPRIS P1 BASIC20.05■□□□□ 0.8
HLA-DMBP28068 LY6K-203ENST00000519387 963 ntAPPRIS ALT2 TSL 2 BASIC20.05■□□□□ 0.8
HLA-DMBP28068 HNRNPAB-202ENST00000358344 1796 ntAPPRIS P4 TSL 1 (best) BASIC20.04■□□□□ 0.8
HLA-DMBP28068 MZT2B-202ENST00000409255 769 ntAPPRIS ALT2 TSL 5 BASIC20.04■□□□□ 0.8
HLA-DMBP28068 HOXB3-211ENST00000490677 1109 ntTSL 1 (best) BASIC20.04■□□□□ 0.8
HLA-DMBP28068 MARCH2-202ENST00000381035 1192 ntTSL 5 BASIC20.02■□□□□ 0.8
HLA-DMBP28068 RCC1L-201ENST00000610322 2300 ntAPPRIS P1 TSL 1 (best) BASIC20.02■□□□□ 0.79
HLA-DMBP28068 SIGMAR1-203ENST00000378892 1743 ntTSL 2 BASIC20.02■□□□□ 0.79
HLA-DMBP28068 ITGA9-203ENST00000422441 2282 ntTSL 1 (best) BASIC20.01■□□□□ 0.79
HLA-DMBP28068 EFNA3-201ENST00000368408 1782 ntAPPRIS P1 TSL 1 (best) BASIC20.01■□□□□ 0.79
HLA-DMBP28068 GKAP1-203ENST00000376371 1778 ntAPPRIS P1 TSL 1 (best) BASIC20.01■□□□□ 0.79
HLA-DMBP28068 SETD8P1-201ENST00000623146 1180 ntBASIC20.01■□□□□ 0.79
HLA-DMBP28068 RAB40C-201ENST00000248139 2699 ntAPPRIS P1 TSL 1 (best) BASIC20.01■□□□□ 0.79
HLA-DMBP28068 SLC9A3R2-202ENST00000432365 1564 ntTSL 1 (best) BASIC20■□□□□ 0.79
HLA-DMBP28068 TXN-202ENST00000374517 869 ntAPPRIS P1 TSL 1 (best) BASIC20■□□□□ 0.79
HLA-DMBP28068 UBALD2-203ENST00000589240 660 ntTSL 2 BASIC20■□□□□ 0.79
HLA-DMBP28068 PGM5P2-201ENST00000613141 1980 ntTSL 1 (best) BASIC19.99■□□□□ 0.79
HLA-DMBP28068 PIP4K2B-204ENST00000619039 5734 ntAPPRIS P1 TSL 1 (best) BASIC19.99■□□□□ 0.79
HLA-DMBP28068 EXOC3-209ENST00000512944 2825 ntAPPRIS P1 TSL 1 (best) BASIC19.98■□□□□ 0.79
HLA-DMBP28068 AC097358.2-201ENST00000607541 1159 ntBASIC19.98■□□□□ 0.79
HLA-DMBP28068 CGREF1-204ENST00000402550 1575 ntTSL 2 BASIC19.98■□□□□ 0.79
HLA-DMBP28068 XKR6-201ENST00000297303 1550 ntTSL 1 (best) BASIC19.97■□□□□ 0.79
HLA-DMBP28068 HDGF-210ENST00000537739 2073 ntAPPRIS P1 TSL 1 (best) BASIC19.97■□□□□ 0.79
HLA-DMBP28068 MXD3-203ENST00000439742 1483 ntAPPRIS P1 TSL 1 (best) BASIC19.97■□□□□ 0.79
HLA-DMBP28068 GLRB-203ENST00000509282 1757 ntAPPRIS P1 TSL 1 (best) BASIC19.96■□□□□ 0.79
HLA-DMBP28068 FAM89B-201ENST00000316409 1409 ntTSL 1 (best) BASIC19.96■□□□□ 0.79
HLA-DMBP28068 AL133346.1-201ENST00000435287 495 ntTSL 2 BASIC19.96■□□□□ 0.79
HLA-DMBP28068 HAUS7-201ENST00000370210 1593 ntAPPRIS ALT2 TSL 2 BASIC19.95■□□□□ 0.78
HLA-DMBP28068 ATPAF1-202ENST00000371937 1827 ntAPPRIS P1 TSL 1 (best) BASIC19.95■□□□□ 0.78
HLA-DMBP28068 SP8-201ENST00000361443 1714 ntAPPRIS P3 TSL 1 (best) BASIC19.95■□□□□ 0.78
HLA-DMBP28068 FGF18-201ENST00000274625 1986 ntAPPRIS P1 TSL 1 (best) BASIC19.95■□□□□ 0.78
HLA-DMBP28068 COL13A1-213ENST00000520267 2276 ntAPPRIS ALT2 TSL 5 BASIC19.95■□□□□ 0.78
HLA-DMBP28068 WSB2-201ENST00000315436 2646 ntAPPRIS P1 TSL 1 (best) BASIC19.94■□□□□ 0.78
HLA-DMBP28068 C1orf122-204ENST00000468084 1234 ntAPPRIS ALT2 TSL 2 BASIC19.94■□□□□ 0.78
HLA-DMBP28068 DPF1-202ENST00000412732 2303 ntTSL 1 (best) BASIC19.93■□□□□ 0.78
HLA-DMBP28068 IL13RA1-201ENST00000371642 1096 ntTSL 1 (best) BASIC19.93■□□□□ 0.78
HLA-DMBP28068 PDCD2-215ENST00000614056 1287 ntTSL 2 BASIC19.93■□□□□ 0.78
HLA-DMBP28068 CAPNS1-217ENST00000629983 799 ntTSL 5 BASIC19.93■□□□□ 0.78
HLA-DMBP28068 RUNDC3A-206ENST00000590941 1675 ntTSL 1 (best) BASIC19.93■□□□□ 0.78
HLA-DMBP28068 SHOX2-204ENST00000483851 1866 ntAPPRIS ALT2 TSL 2 BASIC19.92■□□□□ 0.78
HLA-DMBP28068 SLC30A10-202ENST00000366926 1915 ntAPPRIS P1 TSL 1 (best) BASIC19.92■□□□□ 0.78
HLA-DMBP28068 ARPC5L-202ENST00000353214 2507 ntAPPRIS P1 TSL 2 BASIC19.92■□□□□ 0.78
HLA-DMBP28068 CARS2-201ENST00000257347 1879 ntAPPRIS P1 TSL 1 (best) BASIC19.92■□□□□ 0.78
HLA-DMBP28068 NPTXR-202ENST00000640136 1503 ntAPPRIS P2 TSL 1 (best) BASIC19.91■□□□□ 0.78
HLA-DMBP28068 ADAP1-201ENST00000265846 2363 ntAPPRIS P1 TSL 1 (best) BASIC19.9■□□□□ 0.78
HLA-DMBP28068 ATPAF1-201ENST00000329231 1241 ntTSL 2 BASIC19.9■□□□□ 0.78
HLA-DMBP28068 SIGMAR1-205ENST00000477726 840 ntTSL 1 (best) BASIC19.9■□□□□ 0.78
HLA-DMBP28068 GABRA5-203ENST00000400081 2761 ntAPPRIS P1 TSL 5 BASIC19.9■□□□□ 0.78
HLA-DMBP28068 FEV-201ENST00000295727 1879 ntAPPRIS P1 TSL 1 (best) BASIC19.9■□□□□ 0.78
HLA-DMBP28068 COL13A1-214ENST00000522165 2061 ntAPPRIS ALT2 TSL 5 BASIC19.9■□□□□ 0.78
HLA-DMBP28068 INPP5A-202ENST00000368593 1432 ntTSL 1 (best) BASIC19.89■□□□□ 0.77
HLA-DMBP28068 SPATA5L1-208ENST00000638607 1863 ntTSL 2 BASIC19.89■□□□□ 0.77
HLA-DMBP28068 THAP11-201ENST00000303596 2114 ntAPPRIS P1 BASIC19.88■□□□□ 0.77
HLA-DMBP28068 NOP53-201ENST00000246802 1528 ntAPPRIS P1 TSL 1 (best) BASIC19.88■□□□□ 0.77
Retrieved 100 of 98,524 protein–RNA pairs in 54.5 ms