Protein–RNA interactions for Protein: P06340

HLA-DOA, HLA class II histocompatibility antigen, DO alpha chain, humanhuman

Predictions only

Length 250 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
HLA-DOAP06340 STUB1-201ENST00000219548 1472 ntAPPRIS P1 TSL 1 (best) BASIC31.84■■■□□ 2.69
HLA-DOAP06340 HDAC11-206ENST00000405025 576 ntTSL 4 BASIC31.83■■■□□ 2.69
HLA-DOAP06340 CSPG5-205ENST00000610462 2073 ntTSL 5 BASIC31.82■■■□□ 2.68
HLA-DOAP06340 AL139393.1-201ENST00000417479 573 ntTSL 5 BASIC31.81■■■□□ 2.68
HLA-DOAP06340 CCM2-201ENST00000258781 1894 ntAPPRIS P3 TSL 1 (best) BASIC31.8■■■□□ 2.68
HLA-DOAP06340 ZBTB12-201ENST00000375527 1875 ntAPPRIS P1 TSL 1 (best) BASIC31.8■■■□□ 2.68
HLA-DOAP06340 MXD3-203ENST00000439742 1483 ntAPPRIS P1 TSL 1 (best) BASIC31.8■■■□□ 2.68
HLA-DOAP06340 NME2-202ENST00000393190 866 ntAPPRIS P1 TSL 1 (best) BASIC31.8■■■□□ 2.68
HLA-DOAP06340 AGPAT2-202ENST00000371696 1512 ntAPPRIS P1 TSL 1 (best) BASIC31.8■■■□□ 2.68
HLA-DOAP06340 MSRB2-201ENST00000376510 1803 ntAPPRIS P1 TSL 1 (best) BASIC31.79■■■□□ 2.68
HLA-DOAP06340 SCX-201ENST00000567180 999 ntAPPRIS P1 TSL 1 (best) BASIC31.79■■■□□ 2.68
HLA-DOAP06340 GALK1-205ENST00000588479 1866 ntAPPRIS P1 TSL 1 (best) BASIC31.79■■■□□ 2.68
HLA-DOAP06340 AP000547.3-202ENST00000592107 1019 ntTSL 1 (best) BASIC31.79■■■□□ 2.68
HLA-DOAP06340 CIB1-201ENST00000328649 1247 ntAPPRIS P1 TSL 1 (best) BASIC31.78■■■□□ 2.68
HLA-DOAP06340 CIB1-202ENST00000612800 1096 ntTSL 1 (best) BASIC31.78■■■□□ 2.68
HLA-DOAP06340 ARHGDIG-201ENST00000219409 949 ntAPPRIS P1 TSL 1 (best) BASIC31.76■■■□□ 2.67
HLA-DOAP06340 AC108673.1-201ENST00000510422 1159 ntBASIC31.76■■■□□ 2.67
HLA-DOAP06340 HGH1-207ENST00000628266 258 ntTSL 5 BASIC31.76■■■□□ 2.67
HLA-DOAP06340 HNRNPAB-206ENST00000506339 1747 ntAPPRIS ALT2 TSL 5 BASIC31.75■■■□□ 2.67
HLA-DOAP06340 DUX4L29-201ENST00000425409 679 ntBASIC31.75■■■□□ 2.67
HLA-DOAP06340 ZNRF2P2-203ENST00000454624 420 ntBASIC31.75■■■□□ 2.67
HLA-DOAP06340 TSPAN11-203ENST00000545802 1649 ntTSL 1 (best) BASIC31.75■■■□□ 2.67
HLA-DOAP06340 PDCD2-209ENST00000542896 1082 ntTSL 2 BASIC31.74■■■□□ 2.67
HLA-DOAP06340 PVT1-219ENST00000523427 938 ntTSL 3 BASIC31.73■■■□□ 2.67
HLA-DOAP06340 SLC35D2-202ENST00000375257 889 ntTSL 2 BASIC31.72■■■□□ 2.67
HLA-DOAP06340 CIB2-204ENST00000557846 934 ntTSL 3 BASIC31.72■■■□□ 2.67
HLA-DOAP06340 FTCD-202ENST00000397743 1834 ntTSL 1 (best) BASIC31.72■■■□□ 2.67
HLA-DOAP06340 BCL7B-201ENST00000223368 1975 ntAPPRIS P1 TSL 1 (best) BASIC31.71■■■□□ 2.67
HLA-DOAP06340 LSM14B-204ENST00000370915 1079 ntTSL 1 (best) BASIC31.71■■■□□ 2.67
HLA-DOAP06340 PCYT2-206ENST00000571105 1628 ntTSL 5 BASIC31.71■■■□□ 2.67
HLA-DOAP06340 REPIN1-204ENST00000466559 1022 ntTSL 1 (best) BASIC31.69■■■□□ 2.66
HLA-DOAP06340 U2AF2-206ENST00000590551 1104 ntTSL 3 BASIC31.69■■■□□ 2.66
HLA-DOAP06340 RCE1-201ENST00000309657 1485 ntAPPRIS P1 TSL 1 (best) BASIC31.69■■■□□ 2.66
HLA-DOAP06340 UBE2S-203ENST00000589978 496 ntTSL 5 BASIC31.68■■■□□ 2.66
HLA-DOAP06340 MIR6090-201ENST00000622481 60 ntBASIC31.68■■■□□ 2.66
HLA-DOAP06340 GRASP-201ENST00000293662 1933 ntAPPRIS P1 TSL 1 (best) BASIC31.68■■■□□ 2.66
HLA-DOAP06340 TMEM229A-201ENST00000455783 2108 ntAPPRIS P1 BASIC31.67■■■□□ 2.66
HLA-DOAP06340 PDXP-201ENST00000215904 2010 ntAPPRIS P1 TSL 1 (best) BASIC31.66■■■□□ 2.66
HLA-DOAP06340 UBE2A-207ENST00000628549 934 ntTSL 2 BASIC31.66■■■□□ 2.66
HLA-DOAP06340 GATA6-202ENST00000581694 2057 ntAPPRIS P1 TSL 1 (best) BASIC31.65■■■□□ 2.66
HLA-DOAP06340 AC021231.2-201ENST00000594613 730 ntBASIC31.64■■■□□ 2.66
HLA-DOAP06340 CNIH2-203ENST00000528852 1524 ntAPPRIS ALT1 TSL 1 (best) BASIC31.64■■■□□ 2.66
HLA-DOAP06340 BTBD19-203ENST00000450269 1572 ntAPPRIS P1 TSL 5 BASIC31.64■■■□□ 2.65
HLA-DOAP06340 AC096888.1-201ENST00000487097 565 ntTSL 4 BASIC31.63■■■□□ 2.65
HLA-DOAP06340 CISD3-204ENST00000613478 2074 ntAPPRIS P1 TSL 2 BASIC31.62■■■□□ 2.65
HLA-DOAP06340 MISP3-202ENST00000587086 1535 ntAPPRIS P2 TSL 1 (best) BASIC31.61■■■□□ 2.65
HLA-DOAP06340 GSC-201ENST00000238558 1264 ntAPPRIS P1 TSL 1 (best) BASIC31.61■■■□□ 2.65
HLA-DOAP06340 DOCK5-202ENST00000410074 786 ntTSL 2 BASIC31.6■■■□□ 2.65
HLA-DOAP06340 CCDC149-203ENST00000502801 1079 ntTSL 1 (best) BASIC31.6■■■□□ 2.65
HLA-DOAP06340 PIK3R2-208ENST00000617642 1446 ntTSL 5 BASIC31.59■■■□□ 2.65
HLA-DOAP06340 HS3ST6-201ENST00000454677 1273 ntAPPRIS P1 TSL 1 (best) BASIC31.58■■■□□ 2.65
HLA-DOAP06340 AL451007.3-201ENST00000640271 588 ntAPPRIS P1 BASIC31.58■■■□□ 2.65
HLA-DOAP06340 ECI1-207ENST00000570258 1512 ntAPPRIS ALT2 TSL 5 BASIC31.58■■■□□ 2.65
HLA-DOAP06340 RP9P-201ENST00000381639 1303 ntTSL 1 (best) BASIC31.56■■■□□ 2.64
HLA-DOAP06340 HINT2-201ENST00000259667 628 ntAPPRIS P1 TSL 1 (best) BASIC31.56■■■□□ 2.64
HLA-DOAP06340 DNLZ-201ENST00000371738 724 ntAPPRIS P1 TSL 1 (best) BASIC31.56■■■□□ 2.64
HLA-DOAP06340 POLR1D-201ENST00000302979 1166 ntAPPRIS P2 TSL 1 (best) BASIC31.55■■■□□ 2.64
HLA-DOAP06340 LAPTM4B-203ENST00000521545 915 ntAPPRIS P1 TSL 1 (best) BASIC31.55■■■□□ 2.64
HLA-DOAP06340 MTMR1-214ENST00000542156 1227 ntTSL 1 (best) BASIC31.55■■■□□ 2.64
HLA-DOAP06340 KHDRBS3-201ENST00000355849 1977 ntAPPRIS P1 TSL 1 (best) BASIC31.55■■■□□ 2.64
HLA-DOAP06340 AC116407.1-201ENST00000398832 1599 ntTSL 2 BASIC31.54■■■□□ 2.64
HLA-DOAP06340 HLA-V-202ENST00000446817 847 ntBASIC31.53■■■□□ 2.64
HLA-DOAP06340 ATP6V1E2-204ENST00000522587 1559 ntAPPRIS P1 TSL 3 BASIC31.52■■■□□ 2.64
HLA-DOAP06340 ATRNL1-209ENST00000609571 1818 ntTSL 1 (best) BASIC31.52■■■□□ 2.64
HLA-DOAP06340 NPTXR-202ENST00000640136 1503 ntAPPRIS P2 TSL 1 (best) BASIC31.52■■■□□ 2.64
HLA-DOAP06340 ABHD12-201ENST00000339157 2117 ntAPPRIS P1 TSL 2 BASIC31.52■■■□□ 2.64
HLA-DOAP06340 KLC2-205ENST00000394078 1557 ntTSL 5 BASIC31.51■■■□□ 2.63
HLA-DOAP06340 GLRX5-201ENST00000331334 1564 ntAPPRIS P1 TSL 1 (best) BASIC31.5■■■□□ 2.63
HLA-DOAP06340 NOXA1-201ENST00000341349 1678 ntAPPRIS P1 TSL 1 (best) BASIC31.5■■■□□ 2.63
HLA-DOAP06340 AL161658.1-201ENST00000623641 1967 ntBASIC31.5■■■□□ 2.63
HLA-DOAP06340 TNK2-201ENST00000333602 5270 ntAPPRIS P1 TSL 1 (best) BASIC31.5■■■□□ 2.63
HLA-DOAP06340 DTNBP1-202ENST00000344537 1403 ntAPPRIS P1 TSL 1 (best) BASIC31.49■■■□□ 2.63
HLA-DOAP06340 MBP-237ENST00000579129 1052 ntTSL 5 BASIC31.49■■■□□ 2.63
HLA-DOAP06340 GLRB-203ENST00000509282 1757 ntAPPRIS P1 TSL 1 (best) BASIC31.48■■■□□ 2.63
HLA-DOAP06340 MLST8-203ENST00000397124 1691 ntAPPRIS P3 TSL 5 BASIC31.48■■■□□ 2.63
HLA-DOAP06340 JMJD8-216ENST00000609261 1901 ntAPPRIS ALT2 TSL 1 (best) BASIC31.47■■■□□ 2.63
HLA-DOAP06340 AC187653.1-201ENST00000506382 702 ntAPPRIS P1 TSL 5 BASIC31.47■■■□□ 2.63
HLA-DOAP06340 AC013394.1-201ENST00000629685 808 ntAPPRIS P1 TSL 5 BASIC31.47■■■□□ 2.63
HLA-DOAP06340 MSX1-201ENST00000382723 1939 ntAPPRIS P1 TSL 1 (best) BASIC31.47■■■□□ 2.63
HLA-DOAP06340 EMID1-201ENST00000334018 2173 ntAPPRIS P1 TSL 1 (best) BASIC31.46■■■□□ 2.63
HLA-DOAP06340 AVEN-201ENST00000306730 1605 ntAPPRIS P1 TSL 1 (best) BASIC31.46■■■□□ 2.63
HLA-DOAP06340 CHPT1-201ENST00000229266 1585 ntAPPRIS P2 TSL 1 (best) BASIC31.45■■■□□ 2.63
HLA-DOAP06340 NOG-201ENST00000332822 1892 ntAPPRIS P1 BASIC31.45■■■□□ 2.63
HLA-DOAP06340 HES7-202ENST00000541682 1674 ntAPPRIS ALT1 TSL 1 (best) BASIC31.44■■■□□ 2.62
HLA-DOAP06340 TCEA2-204ENST00000395053 1733 ntTSL 1 (best) BASIC31.44■■■□□ 2.62
HLA-DOAP06340 MRPL9-201ENST00000368829 882 ntAPPRIS ALT2 TSL 2 BASIC31.44■■■□□ 2.62
HLA-DOAP06340 AL589765.4-201ENST00000512280 382 ntTSL 3 BASIC31.44■■■□□ 2.62
HLA-DOAP06340 MYLIP-202ENST00000356840 1666 ntAPPRIS P1 TSL 1 (best) BASIC31.44■■■□□ 2.62
HLA-DOAP06340 PRSS41-201ENST00000399677 1127 ntAPPRIS P1 TSL 5 BASIC31.43■■■□□ 2.62
HLA-DOAP06340 XKR6-201ENST00000297303 1550 ntTSL 1 (best) BASIC31.43■■■□□ 2.62
HLA-DOAP06340 PLEKHG6-206ENST00000536531 1683 ntTSL 1 (best) BASIC31.42■■■□□ 2.62
HLA-DOAP06340 GUSB-202ENST00000421103 1742 ntTSL 2 BASIC31.42■■■□□ 2.62
HLA-DOAP06340 BATF3-201ENST00000243440 980 ntAPPRIS P1 TSL 1 (best) BASIC31.42■■■□□ 2.62
HLA-DOAP06340 WNT5A-AS1-201ENST00000469484 500 ntTSL 3 BASIC31.42■■■□□ 2.62
HLA-DOAP06340 DDN-AS1-203ENST00000552284 934 ntTSL 3 BASIC31.42■■■□□ 2.62
HLA-DOAP06340 UCK1-201ENST00000372208 2063 ntTSL 1 (best) BASIC31.42■■■□□ 2.62
HLA-DOAP06340 VEGFA-226ENST00000611736 1239 ntTSL 1 (best) BASIC31.4■■■□□ 2.62
HLA-DOAP06340 U2AF1L5-201ENST00000610664 897 ntAPPRIS P5 TSL 1 (best) BASIC31.39■■■□□ 2.62
HLA-DOAP06340 PLEKHJ1-201ENST00000326631 1206 ntAPPRIS P1 TSL 1 (best) BASIC31.38■■■□□ 2.61
HLA-DOAP06340 NOP53-201ENST00000246802 1528 ntAPPRIS P1 TSL 1 (best) BASIC31.37■■■□□ 2.61
Retrieved 100 of 98,524 protein–RNA pairs in 35.7 ms