Protein–RNA interactions for Protein: P02708

CHRNA1, Acetylcholine receptor subunit alpha, humanhuman

Predictions only

Length 482 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
CHRNA1P02708 REPIN1-204ENST00000466559 1022 ntTSL 1 (best) BASIC29.6■■■□□ 2.33
CHRNA1P02708 AC012615.2-201ENST00000586259 447 ntTSL 4 BASIC29.6■■■□□ 2.33
CHRNA1P02708 RCE1-201ENST00000309657 1485 ntAPPRIS P1 TSL 1 (best) BASIC29.59■■■□□ 2.33
CHRNA1P02708 ANGPTL6-204ENST00000592641 1781 ntAPPRIS P1 TSL 1 (best) BASIC29.59■■■□□ 2.33
CHRNA1P02708 GSC-201ENST00000238558 1264 ntAPPRIS P1 TSL 1 (best) BASIC29.58■■■□□ 2.33
CHRNA1P02708 SLC9A3R2-202ENST00000432365 1564 ntTSL 1 (best) BASIC29.58■■■□□ 2.33
CHRNA1P02708 AC021231.2-201ENST00000594613 730 ntBASIC29.58■■■□□ 2.33
CHRNA1P02708 RDX-206ENST00000528900 1814 ntTSL 1 (best) BASIC29.57■■■□□ 2.32
CHRNA1P02708 WNT5A-AS1-201ENST00000469484 500 ntTSL 3 BASIC29.56■■■□□ 2.32
CHRNA1P02708 MIR6090-201ENST00000622481 60 ntBASIC29.56■■■□□ 2.32
CHRNA1P02708 STUB1-201ENST00000219548 1472 ntAPPRIS P1 TSL 1 (best) BASIC29.55■■■□□ 2.32
CHRNA1P02708 CCDC149-203ENST00000502801 1079 ntTSL 1 (best) BASIC29.54■■■□□ 2.32
CHRNA1P02708 CIB2-204ENST00000557846 934 ntTSL 3 BASIC29.54■■■□□ 2.32
CHRNA1P02708 CAPNS1-211ENST00000590874 926 ntTSL 5 BASIC29.54■■■□□ 2.32
CHRNA1P02708 AC116407.1-201ENST00000398832 1599 ntTSL 2 BASIC29.54■■■□□ 2.32
CHRNA1P02708 AC108673.1-201ENST00000510422 1159 ntBASIC29.52■■■□□ 2.32
CHRNA1P02708 AC105285.1-201ENST00000500914 2036 ntTSL 1 (best) BASIC29.51■■■□□ 2.31
CHRNA1P02708 AC187653.1-201ENST00000506382 702 ntAPPRIS P1 TSL 5 BASIC29.51■■■□□ 2.31
CHRNA1P02708 LAPTM4B-203ENST00000521545 915 ntAPPRIS P1 TSL 1 (best) BASIC29.51■■■□□ 2.31
CHRNA1P02708 AC013394.1-201ENST00000629685 808 ntAPPRIS P1 TSL 5 BASIC29.51■■■□□ 2.31
CHRNA1P02708 GALK1-205ENST00000588479 1866 ntAPPRIS P1 TSL 1 (best) BASIC29.51■■■□□ 2.31
CHRNA1P02708 UBE2S-203ENST00000589978 496 ntTSL 5 BASIC29.5■■■□□ 2.31
CHRNA1P02708 AP000547.3-202ENST00000592107 1019 ntTSL 1 (best) BASIC29.5■■■□□ 2.31
CHRNA1P02708 KCNQ5-204ENST00000370392 1469 ntTSL 1 (best) BASIC29.49■■■□□ 2.31
CHRNA1P02708 FMR1-219ENST00000621453 1864 ntTSL 1 (best) BASIC29.49■■■□□ 2.31
CHRNA1P02708 AL139393.1-201ENST00000417479 573 ntTSL 5 BASIC29.49■■■□□ 2.31
CHRNA1P02708 AL451007.3-201ENST00000640271 588 ntAPPRIS P1 BASIC29.49■■■□□ 2.31
CHRNA1P02708 CIB1-201ENST00000328649 1247 ntAPPRIS P1 TSL 1 (best) BASIC29.48■■■□□ 2.31
CHRNA1P02708 CIB1-202ENST00000612800 1096 ntTSL 1 (best) BASIC29.48■■■□□ 2.31
CHRNA1P02708 MISP3-202ENST00000587086 1535 ntAPPRIS P2 TSL 1 (best) BASIC29.48■■■□□ 2.31
CHRNA1P02708 RP9P-201ENST00000381639 1303 ntTSL 1 (best) BASIC29.46■■■□□ 2.31
CHRNA1P02708 HINT2-201ENST00000259667 628 ntAPPRIS P1 TSL 1 (best) BASIC29.46■■■□□ 2.31
CHRNA1P02708 MXD3-203ENST00000439742 1483 ntAPPRIS P1 TSL 1 (best) BASIC29.46■■■□□ 2.31
CHRNA1P02708 AC120057.4-201ENST00000624722 1615 ntBASIC29.43■■■□□ 2.3
CHRNA1P02708 DNLZ-201ENST00000371738 724 ntAPPRIS P1 TSL 1 (best) BASIC29.43■■■□□ 2.3
CHRNA1P02708 DOCK5-202ENST00000410074 786 ntTSL 2 BASIC29.43■■■□□ 2.3
CHRNA1P02708 SCX-201ENST00000567180 999 ntAPPRIS P1 TSL 1 (best) BASIC29.43■■■□□ 2.3
CHRNA1P02708 AGPAT2-202ENST00000371696 1512 ntAPPRIS P1 TSL 1 (best) BASIC29.43■■■□□ 2.3
CHRNA1P02708 ECI1-207ENST00000570258 1512 ntAPPRIS ALT2 TSL 5 BASIC29.43■■■□□ 2.3
CHRNA1P02708 MTCP1-202ENST00000369476 2274 ntAPPRIS P1 TSL 3 BASIC29.43■■■□□ 2.3
CHRNA1P02708 RPS2-202ENST00000526522 924 ntTSL 2 BASIC29.42■■■□□ 2.3
CHRNA1P02708 RASSF7-202ENST00000397583 1928 ntAPPRIS P3 TSL 1 (best) BASIC29.41■■■□□ 2.3
CHRNA1P02708 UBE2A-207ENST00000628549 934 ntTSL 2 BASIC29.41■■■□□ 2.3
CHRNA1P02708 ACOT12-204ENST00000513751 612 ntTSL 1 (best) BASIC29.4■■■□□ 2.3
CHRNA1P02708 DDN-AS1-203ENST00000552284 934 ntTSL 3 BASIC29.39■■■□□ 2.3
CHRNA1P02708 SIAH1-203ENST00000394725 2147 ntAPPRIS P3 TSL 1 (best) BASIC29.38■■■□□ 2.29
CHRNA1P02708 POLR1D-201ENST00000302979 1166 ntAPPRIS P2 TSL 1 (best) BASIC29.38■■■□□ 2.29
CHRNA1P02708 PCYT2-206ENST00000571105 1628 ntTSL 5 BASIC29.38■■■□□ 2.29
CHRNA1P02708 TRNP1-201ENST00000522111 1958 ntAPPRIS P2 TSL 1 (best) BASIC29.37■■■□□ 2.29
CHRNA1P02708 HNRNPAB-206ENST00000506339 1747 ntAPPRIS ALT2 TSL 5 BASIC29.34■■■□□ 2.29
CHRNA1P02708 ARL8A-204ENST00000614750 1727 ntTSL 3 BASIC29.34■■■□□ 2.29
CHRNA1P02708 DTNBP1-202ENST00000344537 1403 ntAPPRIS P1 TSL 1 (best) BASIC29.34■■■□□ 2.29
CHRNA1P02708 KLC2-205ENST00000394078 1557 ntTSL 5 BASIC29.34■■■□□ 2.29
CHRNA1P02708 ZBTB12-201ENST00000375527 1875 ntAPPRIS P1 TSL 1 (best) BASIC29.34■■■□□ 2.29
CHRNA1P02708 MRPL9-201ENST00000368829 882 ntAPPRIS ALT2 TSL 2 BASIC29.33■■■□□ 2.29
CHRNA1P02708 AL589765.4-201ENST00000512280 382 ntTSL 3 BASIC29.33■■■□□ 2.29
CHRNA1P02708 TSPAN11-203ENST00000545802 1649 ntTSL 1 (best) BASIC29.32■■■□□ 2.28
CHRNA1P02708 MACF1-219ENST00000484793 834 ntTSL 2 BASIC29.32■■■□□ 2.28
CHRNA1P02708 OLFM2-201ENST00000264833 2019 ntAPPRIS P1 TSL 1 (best) BASIC29.32■■■□□ 2.28
CHRNA1P02708 ATP6V1E2-204ENST00000522587 1559 ntAPPRIS P1 TSL 3 BASIC29.31■■■□□ 2.28
CHRNA1P02708 CCM2-201ENST00000258781 1894 ntAPPRIS P3 TSL 1 (best) BASIC29.3■■■□□ 2.28
CHRNA1P02708 BTBD19-203ENST00000450269 1572 ntAPPRIS P1 TSL 5 BASIC29.3■■■□□ 2.28
CHRNA1P02708 NIT1-201ENST00000368007 1749 ntTSL 2 BASIC29.29■■■□□ 2.28
CHRNA1P02708 PLEKHJ1-201ENST00000326631 1206 ntAPPRIS P1 TSL 1 (best) BASIC29.29■■■□□ 2.28
CHRNA1P02708 RNF166-209ENST00000567844 633 ntTSL 5 BASIC29.28■■■□□ 2.28
CHRNA1P02708 MIR639-201ENST00000384974 98 ntBASIC29.27■■■□□ 2.28
CHRNA1P02708 VEGFA-226ENST00000611736 1239 ntTSL 1 (best) BASIC29.27■■■□□ 2.28
CHRNA1P02708 RPS2-201ENST00000343262 985 ntAPPRIS P1 TSL 1 (best) BASIC29.26■■■□□ 2.27
CHRNA1P02708 PRSS41-201ENST00000399677 1127 ntAPPRIS P1 TSL 5 BASIC29.26■■■□□ 2.27
CHRNA1P02708 AL118558.1-203ENST00000553701 447 ntTSL 3 BASIC29.26■■■□□ 2.27
CHRNA1P02708 MIR4449-201ENST00000578365 66 ntBASIC29.26■■■□□ 2.27
CHRNA1P02708 MIR3648-2-201ENST00000581792 180 ntBASIC29.26■■■□□ 2.27
CHRNA1P02708 MIR3648-1-201ENST00000615959 180 ntBASIC29.26■■■□□ 2.27
CHRNA1P02708 NOXA1-201ENST00000341349 1678 ntAPPRIS P1 TSL 1 (best) BASIC29.25■■■□□ 2.27
CHRNA1P02708 CHPT1-201ENST00000229266 1585 ntAPPRIS P2 TSL 1 (best) BASIC29.24■■■□□ 2.27
CHRNA1P02708 NREP-216ENST00000508870 540 ntAPPRIS P1 TSL 4 BASIC29.24■■■□□ 2.27
CHRNA1P02708 FTCD-202ENST00000397743 1834 ntTSL 1 (best) BASIC29.24■■■□□ 2.27
CHRNA1P02708 PIK3R2-208ENST00000617642 1446 ntTSL 5 BASIC29.23■■■□□ 2.27
CHRNA1P02708 AC016575.1-201ENST00000607026 382 ntBASIC29.23■■■□□ 2.27
CHRNA1P02708 DUX4L11-201ENST00000611504 1267 ntBASIC29.23■■■□□ 2.27
CHRNA1P02708 DUX4L12-201ENST00000614593 1267 ntBASIC29.23■■■□□ 2.27
CHRNA1P02708 LINC01971-201ENST00000617888 1048 ntBASIC29.23■■■□□ 2.27
CHRNA1P02708 DUX4L14-201ENST00000621227 1267 ntBASIC29.23■■■□□ 2.27
CHRNA1P02708 GDI1-215ENST00000630693 786 ntTSL 4 BASIC29.23■■■□□ 2.27
CHRNA1P02708 SULT4A1-201ENST00000330884 2468 ntAPPRIS P1 TSL 1 (best) BASIC29.23■■■□□ 2.27
CHRNA1P02708 CLEC3B-202ENST00000428034 752 ntTSL 2 BASIC29.21■■■□□ 2.27
CHRNA1P02708 MSRB2-201ENST00000376510 1803 ntAPPRIS P1 TSL 1 (best) BASIC29.2■■■□□ 2.26
CHRNA1P02708 KRT18-201ENST00000388835 1562 ntAPPRIS P1 TSL 1 (best) BASIC29.19■■■□□ 2.26
CHRNA1P02708 U2AF1L5-201ENST00000610664 897 ntAPPRIS P5 TSL 1 (best) BASIC29.19■■■□□ 2.26
CHRNA1P02708 CR559946.2-201ENST00000623684 991 ntBASIC29.17■■■□□ 2.26
CHRNA1P02708 BCL7B-201ENST00000223368 1975 ntAPPRIS P1 TSL 1 (best) BASIC29.17■■■□□ 2.26
CHRNA1P02708 NOG-201ENST00000332822 1892 ntAPPRIS P1 BASIC29.17■■■□□ 2.26
CHRNA1P02708 CSPG5-205ENST00000610462 2073 ntTSL 5 BASIC29.16■■■□□ 2.26
CHRNA1P02708 ABHD12-201ENST00000339157 2117 ntAPPRIS P1 TSL 2 BASIC29.15■■■□□ 2.26
CHRNA1P02708 PLEKHG6-206ENST00000536531 1683 ntTSL 1 (best) BASIC29.14■■■□□ 2.26
CHRNA1P02708 CISD3-204ENST00000613478 2074 ntAPPRIS P1 TSL 2 BASIC29.14■■■□□ 2.25
CHRNA1P02708 MAD2L2-207ENST00000376692 1118 ntAPPRIS P1 TSL 1 (best) BASIC29.13■■■□□ 2.25
CHRNA1P02708 TMEM229A-201ENST00000455783 2108 ntAPPRIS P1 BASIC29.13■■■□□ 2.25
CHRNA1P02708 MYLIP-202ENST00000356840 1666 ntAPPRIS P1 TSL 1 (best) BASIC29.12■■■□□ 2.25
CHRNA1P02708 NPTXR-202ENST00000640136 1503 ntAPPRIS P2 TSL 1 (best) BASIC29.12■■■□□ 2.25
Retrieved 100 of 98,524 protein–RNA pairs in 47.1 ms