Protein–RNA interactions for Protein: O76039

CDKL5, Cyclin-dependent kinase-like 5, humanhuman

Predictions only

Length 1,030 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
CDKL5O76039 ZFAND2B-204ENST00000409217 886 ntTSL 2 BASIC31.03■■■□□ 2.56
CDKL5O76039 FTCDNL1-201ENST00000416668 944 ntTSL 1 (best) BASIC31.03■■■□□ 2.56
CDKL5O76039 ARTN-204ENST00000438616 889 ntTSL 1 (best) BASIC31.03■■■□□ 2.56
CDKL5O76039 COL13A1-210ENST00000517713 2007 ntAPPRIS ALT2 TSL 5 BASIC31.03■■■□□ 2.56
CDKL5O76039 GUSB-202ENST00000421103 1742 ntTSL 2 BASIC31.02■■■□□ 2.56
CDKL5O76039 PI4KAP2-202ENST00000450651 2294 ntTSL 5 BASIC31.02■■■□□ 2.56
CDKL5O76039 UBALD2-203ENST00000589240 660 ntTSL 2 BASIC31.02■■■□□ 2.56
CDKL5O76039 FAM78B-202ENST00000354422 1475 ntAPPRIS P1 TSL 2 BASIC31.01■■■□□ 2.56
CDKL5O76039 ABCB10P1-201ENST00000614297 2181 ntBASIC31.01■■■□□ 2.55
CDKL5O76039 AGPAT2-202ENST00000371696 1512 ntAPPRIS P1 TSL 1 (best) BASIC31.01■■■□□ 2.55
CDKL5O76039 MARCH2-202ENST00000381035 1192 ntTSL 5 BASIC31■■■□□ 2.55
CDKL5O76039 NPTXR-202ENST00000640136 1503 ntAPPRIS P2 TSL 1 (best) BASIC30.98■■■□□ 2.55
CDKL5O76039 SSU72-201ENST00000291386 1290 ntAPPRIS P1 TSL 1 (best) BASIC30.98■■■□□ 2.55
CDKL5O76039 DUSP15-202ENST00000339738 1454 ntAPPRIS P1 TSL 1 (best) BASIC30.97■■■□□ 2.55
CDKL5O76039 MZT2B-202ENST00000409255 769 ntAPPRIS ALT2 TSL 5 BASIC30.97■■■□□ 2.55
CDKL5O76039 LDB1-202ENST00000425280 2089 ntTSL 5 BASIC30.97■■■□□ 2.55
CDKL5O76039 GLRB-203ENST00000509282 1757 ntAPPRIS P1 TSL 1 (best) BASIC30.97■■■□□ 2.55
CDKL5O76039 DENR-202ENST00000455982 1052 ntTSL 5 BASIC30.94■■■□□ 2.54
CDKL5O76039 TSPAN33-201ENST00000486685 1863 ntAPPRIS P1 TSL 1 (best) BASIC30.94■■■□□ 2.54
CDKL5O76039 AL135925.1-201ENST00000605920 1701 ntBASIC30.94■■■□□ 2.54
CDKL5O76039 ST7-AS1-201ENST00000456775 1889 ntBASIC30.93■■■□□ 2.54
CDKL5O76039 XKR6-201ENST00000297303 1550 ntTSL 1 (best) BASIC30.93■■■□□ 2.54
CDKL5O76039 ARL8A-201ENST00000272217 1793 ntAPPRIS P1 TSL 1 (best) BASIC30.92■■■□□ 2.54
CDKL5O76039 BCL3-201ENST00000164227 2038 ntAPPRIS P1 TSL 1 (best) BASIC30.91■■■□□ 2.54
CDKL5O76039 UBE2L6-201ENST00000287156 1354 ntAPPRIS P1 TSL 1 (best) BASIC30.91■■■□□ 2.54
CDKL5O76039 PHOX2A-201ENST00000298231 1699 ntAPPRIS P1 TSL 1 (best) BASIC30.9■■■□□ 2.54
CDKL5O76039 CRIP1-201ENST00000330233 1311 ntAPPRIS P1 TSL 1 (best) BASIC30.9■■■□□ 2.54
CDKL5O76039 ATRAID-201ENST00000380171 1240 ntTSL 1 (best) BASIC30.89■■■□□ 2.54
CDKL5O76039 GSTP1-202ENST00000398606 965 ntAPPRIS P1 TSL 1 (best) BASIC30.89■■■□□ 2.54
CDKL5O76039 GKAP1-203ENST00000376371 1778 ntAPPRIS P1 TSL 1 (best) BASIC30.88■■■□□ 2.53
CDKL5O76039 AC092755.2-201ENST00000560199 402 ntTSL 3 BASIC30.88■■■□□ 2.53
CDKL5O76039 DCBLD1-201ENST00000296955 1979 ntAPPRIS P2 TSL 1 (best) BASIC30.88■■■□□ 2.53
CDKL5O76039 ZNF513-201ENST00000323703 2139 ntAPPRIS P1 TSL 1 (best) BASIC30.88■■■□□ 2.53
CDKL5O76039 ANKRD13D-211ENST00000511455 2139 ntAPPRIS P1 TSL 1 (best) BASIC30.88■■■□□ 2.53
CDKL5O76039 FOXA2-202ENST00000419308 2422 ntAPPRIS ALT2 TSL 1 (best) BASIC30.87■■■□□ 2.53
CDKL5O76039 PSMG4-205ENST00000419065 629 ntTSL 2 BASIC30.86■■■□□ 2.53
CDKL5O76039 AL133346.1-201ENST00000435287 495 ntTSL 2 BASIC30.86■■■□□ 2.53
CDKL5O76039 GSC2-201ENST00000086933 1033 ntAPPRIS P1 TSL 5 BASIC30.86■■■□□ 2.53
CDKL5O76039 AMN-201ENST00000299155 1907 ntAPPRIS P2 TSL 1 (best) BASIC30.85■■■□□ 2.53
CDKL5O76039 GAL3ST1-205ENST00000406361 1819 ntAPPRIS P1 TSL 2 BASIC30.85■■■□□ 2.53
CDKL5O76039 CGREF1-203ENST00000402394 1906 ntAPPRIS P2 TSL 2 BASIC30.85■■■□□ 2.53
CDKL5O76039 NOP53-201ENST00000246802 1528 ntAPPRIS P1 TSL 1 (best) BASIC30.83■■■□□ 2.53
CDKL5O76039 SLC52A2-201ENST00000329994 1896 ntAPPRIS P1 TSL 1 (best) BASIC30.83■■■□□ 2.53
CDKL5O76039 TPGS1-201ENST00000359315 1114 ntAPPRIS P1 TSL 1 (best) BASIC30.83■■■□□ 2.53
CDKL5O76039 HAUS7-201ENST00000370210 1593 ntAPPRIS ALT2 TSL 2 BASIC30.83■■■□□ 2.53
CDKL5O76039 CCDC88C-205ENST00000553403 1651 ntTSL 1 (best) BASIC30.81■■■□□ 2.52
CDKL5O76039 SEC61G-204ENST00000450622 512 ntAPPRIS P1 TSL 2 BASIC30.81■■■□□ 2.52
CDKL5O76039 DUSP14-206ENST00000617516 1537 ntAPPRIS P1 TSL 1 (best) BASIC30.81■■■□□ 2.52
CDKL5O76039 KCTD17-202ENST00000403888 1763 ntAPPRIS ALT2 TSL 1 (best) BASIC30.81■■■□□ 2.52
CDKL5O76039 BTBD19-203ENST00000450269 1572 ntAPPRIS P1 TSL 5 BASIC30.8■■■□□ 2.52
CDKL5O76039 HSD11B1L-209ENST00000577917 1553 ntTSL 1 (best) BASIC30.8■■■□□ 2.52
CDKL5O76039 PDCD2-215ENST00000614056 1287 ntTSL 2 BASIC30.8■■■□□ 2.52
CDKL5O76039 STUB1-201ENST00000219548 1472 ntAPPRIS P1 TSL 1 (best) BASIC30.79■■■□□ 2.52
CDKL5O76039 ESRRA-201ENST00000000442 2215 ntAPPRIS P3 TSL 1 (best) BASIC30.78■■■□□ 2.52
CDKL5O76039 HNRNPAB-202ENST00000358344 1796 ntAPPRIS P4 TSL 1 (best) BASIC30.78■■■□□ 2.52
CDKL5O76039 PIK3R2-208ENST00000617642 1446 ntTSL 5 BASIC30.78■■■□□ 2.52
CDKL5O76039 NGB-201ENST00000298352 1884 ntAPPRIS P1 TSL 1 (best) BASIC30.76■■■□□ 2.52
CDKL5O76039 TM6SF1-202ENST00000322019 2074 ntAPPRIS P1 TSL 1 (best) BASIC30.76■■■□□ 2.51
CDKL5O76039 CARS2-201ENST00000257347 1879 ntAPPRIS P1 TSL 1 (best) BASIC30.76■■■□□ 2.51
CDKL5O76039 ATPAF1-202ENST00000371937 1827 ntAPPRIS P1 TSL 1 (best) BASIC30.75■■■□□ 2.51
CDKL5O76039 GIPC1-203ENST00000393033 1926 ntAPPRIS P1 TSL 1 (best) BASIC30.75■■■□□ 2.51
CDKL5O76039 SUZ12P1-203ENST00000578195 985 ntBASIC30.75■■■□□ 2.51
CDKL5O76039 NOG-201ENST00000332822 1892 ntAPPRIS P1 BASIC30.75■■■□□ 2.51
CDKL5O76039 CUEDC1-201ENST00000360238 2193 ntAPPRIS P1 TSL 2 BASIC30.74■■■□□ 2.51
CDKL5O76039 AL139393.1-201ENST00000417479 573 ntTSL 5 BASIC30.74■■■□□ 2.51
CDKL5O76039 LMO1-202ENST00000428101 1038 ntAPPRIS ALT1 TSL 1 (best) BASIC30.73■■■□□ 2.51
CDKL5O76039 GAL3ST1-204ENST00000402369 1712 ntAPPRIS P1 TSL 3 BASIC30.73■■■□□ 2.51
CDKL5O76039 PELI3-203ENST00000524466 1671 ntTSL 1 (best) BASIC30.71■■■□□ 2.51
CDKL5O76039 PPP3CC-204ENST00000518852 1598 ntTSL 2 BASIC30.71■■■□□ 2.51
CDKL5O76039 SHOX2-204ENST00000483851 1866 ntAPPRIS ALT2 TSL 2 BASIC30.71■■■□□ 2.51
CDKL5O76039 MATK-201ENST00000310132 2133 ntAPPRIS ALT2 TSL 1 (best) BASIC30.71■■■□□ 2.51
CDKL5O76039 FGFRL1-205ENST00000510644 2304 ntAPPRIS P1 TSL 1 (best) BASIC30.7■■■□□ 2.5
CDKL5O76039 RNF130-205ENST00000521389 2263 ntAPPRIS P1 TSL 1 (best) BASIC30.7■■■□□ 2.5
CDKL5O76039 EMC10-202ENST00000376918 2014 ntAPPRIS ALT2 TSL 1 (best) BASIC30.69■■■□□ 2.5
CDKL5O76039 AC010864.1-201ENST00000609407 1511 ntBASIC30.69■■■□□ 2.5
CDKL5O76039 HOXD13-201ENST00000392539 2240 ntAPPRIS P1 TSL 1 (best) BASIC30.69■■■□□ 2.5
CDKL5O76039 HOPX-206ENST00000503639 1248 ntAPPRIS P1 TSL 1 (best) BASIC30.68■■■□□ 2.5
CDKL5O76039 PLPPR3-204ENST00000520876 2328 ntAPPRIS ALT2 TSL 1 (best) BASIC30.68■■■□□ 2.5
CDKL5O76039 MIR762-201ENST00000390236 83 ntBASIC30.67■■■□□ 2.5
CDKL5O76039 CUL4A-202ENST00000375440 2364 ntAPPRIS P1 TSL 1 (best) BASIC30.66■■■□□ 2.5
CDKL5O76039 AC012615.2-201ENST00000586259 447 ntTSL 4 BASIC30.66■■■□□ 2.5
CDKL5O76039 SIRT3-201ENST00000382743 2543 ntAPPRIS P2 TSL 1 (best) BASIC30.65■■■□□ 2.5
CDKL5O76039 NMB-202ENST00000394588 1017 ntTSL 1 (best) BASIC30.65■■■□□ 2.5
CDKL5O76039 RASSF8-202ENST00000381352 2320 ntTSL 1 (best) BASIC30.65■■■□□ 2.5
CDKL5O76039 TMEM268-201ENST00000288502 2314 ntAPPRIS P3 TSL 1 (best) BASIC30.64■■■□□ 2.5
CDKL5O76039 CCZ1B-215ENST00000626257 2211 ntTSL 2 BASIC30.64■■■□□ 2.5
CDKL5O76039 CIB1-201ENST00000328649 1247 ntAPPRIS P1 TSL 1 (best) BASIC30.64■■■□□ 2.5
CDKL5O76039 AC012629.2-201ENST00000606513 377 ntTSL 5 BASIC30.64■■■□□ 2.5
CDKL5O76039 CIB1-202ENST00000612800 1096 ntTSL 1 (best) BASIC30.64■■■□□ 2.5
CDKL5O76039 CHML-205ENST00000638160 705 ntTSL 3 BASIC30.64■■■□□ 2.5
CDKL5O76039 RTN2-201ENST00000245923 2293 ntTSL 1 (best) BASIC30.64■■■□□ 2.5
CDKL5O76039 MISP3-201ENST00000269720 1424 ntAPPRIS ALT2 TSL 5 BASIC30.64■■■□□ 2.49
CDKL5O76039 FOXE3-201ENST00000335071 1981 ntAPPRIS P1 BASIC30.63■■■□□ 2.49
CDKL5O76039 RCC1L-202ENST00000614461 2419 ntTSL 1 (best) BASIC30.63■■■□□ 2.49
CDKL5O76039 ABCB10P3-201ENST00000561950 2166 ntBASIC30.63■■■□□ 2.49
CDKL5O76039 PLEKHG6-206ENST00000536531 1683 ntTSL 1 (best) BASIC30.62■■■□□ 2.49
CDKL5O76039 NEUROG2-201ENST00000313341 2287 ntAPPRIS P1 TSL 1 (best) BASIC30.62■■■□□ 2.49
CDKL5O76039 MYLIP-202ENST00000356840 1666 ntAPPRIS P1 TSL 1 (best) BASIC30.62■■■□□ 2.49
CDKL5O76039 RDX-210ENST00000530301 1549 ntTSL 1 (best) BASIC30.6■■■□□ 2.49
CDKL5O76039 HNRNPLP2-201ENST00000568980 1570 ntBASIC30.6■■■□□ 2.49
Retrieved 100 of 98,524 protein–RNA pairs in 72 ms