Protein–RNA interactions for Protein: O75346

ZNF253, Zinc finger protein 253, humanhuman

Predictions only

Length 499 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
ZNF253O75346 SH3GL3-202ENST00000427482 1806 ntAPPRIS P1 TSL 1 (best) BASIC20.46■□□□□ 0.87
ZNF253O75346 HOXB3-210ENST00000489475 1845 ntTSL 2 BASIC20.46■□□□□ 0.87
ZNF253O75346 CACNG6-201ENST00000252729 1853 ntAPPRIS P1 TSL 1 (best) BASIC20.46■□□□□ 0.87
ZNF253O75346 TSPAN33-201ENST00000486685 1863 ntAPPRIS P1 TSL 1 (best) BASIC20.46■□□□□ 0.87
ZNF253O75346 GALK1-205ENST00000588479 1866 ntAPPRIS P1 TSL 1 (best) BASIC20.46■□□□□ 0.87
ZNF253O75346 CATIP-201ENST00000289388 1323 ntAPPRIS P1 TSL 1 (best) BASIC20.46■□□□□ 0.87
ZNF253O75346 ITGA9-203ENST00000422441 2282 ntTSL 1 (best) BASIC20.46■□□□□ 0.87
ZNF253O75346 ABHD12-201ENST00000339157 2117 ntAPPRIS P1 TSL 2 BASIC20.45■□□□□ 0.86
ZNF253O75346 GIPC1-203ENST00000393033 1926 ntAPPRIS P1 TSL 1 (best) BASIC20.45■□□□□ 0.86
ZNF253O75346 FAAH-201ENST00000243167 2094 ntAPPRIS P1 TSL 1 (best) BASIC20.45■□□□□ 0.86
ZNF253O75346 EPB41L4B-202ENST00000374566 5800 ntAPPRIS P4 TSL 1 (best) BASIC20.44■□□□□ 0.86
ZNF253O75346 CLEC3B-201ENST00000296130 936 ntAPPRIS P1 TSL 1 (best) BASIC20.43■□□□□ 0.86
ZNF253O75346 AL031258.1-201ENST00000623562 325 ntBASIC20.43■□□□□ 0.86
ZNF253O75346 KCNMA1-283ENST00000640523 5425 ntAPPRIS ALT2 TSL 5 BASIC20.42■□□□□ 0.86
ZNF253O75346 AMN-201ENST00000299155 1907 ntAPPRIS P2 TSL 1 (best) BASIC20.42■□□□□ 0.86
ZNF253O75346 AP001107.7-201ENST00000533287 272 ntTSL 2 BASIC20.41■□□□□ 0.86
ZNF253O75346 TMEM9-201ENST00000367330 1959 ntAPPRIS P3 TSL 1 (best) BASIC20.41■□□□□ 0.86
ZNF253O75346 SECTM1-201ENST00000269389 2235 ntAPPRIS P2 TSL 1 (best) BASIC20.4■□□□□ 0.86
ZNF253O75346 LRRC61-202ENST00000359623 1877 ntAPPRIS P1 TSL 2 BASIC20.4■□□□□ 0.86
ZNF253O75346 HNRNPAB-206ENST00000506339 1747 ntAPPRIS ALT2 TSL 5 BASIC20.4■□□□□ 0.86
ZNF253O75346 ARL8A-201ENST00000272217 1793 ntAPPRIS P1 TSL 1 (best) BASIC20.39■□□□□ 0.85
ZNF253O75346 ARMC10-205ENST00000428183 2445 ntTSL 1 (best) BASIC20.38■□□□□ 0.85
ZNF253O75346 ACTR3B-202ENST00000377776 1566 ntTSL 1 (best) BASIC20.38■□□□□ 0.85
ZNF253O75346 C9orf40-201ENST00000376854 2327 ntAPPRIS P1 TSL 1 (best) BASIC20.38■□□□□ 0.85
ZNF253O75346 PLSCR3-202ENST00000535512 2067 ntAPPRIS P1 TSL 1 (best) BASIC20.38■□□□□ 0.85
ZNF253O75346 PLSCR3-214ENST00000619711 2066 ntTSL 5 BASIC20.38■□□□□ 0.85
ZNF253O75346 AC135731.1-201ENST00000569415 2548 ntBASIC20.37■□□□□ 0.85
ZNF253O75346 ST7-AS1-201ENST00000456775 1889 ntBASIC20.37■□□□□ 0.85
ZNF253O75346 GABRA5-203ENST00000400081 2761 ntAPPRIS P1 TSL 5 BASIC20.37■□□□□ 0.85
ZNF253O75346 HOOK2-201ENST00000264827 2603 ntAPPRIS P1 TSL 1 (best) BASIC20.37■□□□□ 0.85
ZNF253O75346 SSBP4-202ENST00000348495 1721 ntAPPRIS ALT1 TSL 2 BASIC20.37■□□□□ 0.85
ZNF253O75346 HMGB1-205ENST00000399494 1282 ntAPPRIS P1 TSL 2 BASIC20.37■□□□□ 0.85
ZNF253O75346 CCDC88C-205ENST00000553403 1651 ntTSL 1 (best) BASIC20.37■□□□□ 0.85
ZNF253O75346 CGREF1-202ENST00000312734 1610 ntAPPRIS P2 TSL 5 BASIC20.37■□□□□ 0.85
ZNF253O75346 HOXB3-201ENST00000311626 2642 ntAPPRIS P1 TSL 1 (best) BASIC20.36■□□□□ 0.85
ZNF253O75346 LDB1-202ENST00000425280 2089 ntTSL 5 BASIC20.36■□□□□ 0.85
ZNF253O75346 SSBP4-206ENST00000599699 793 ntTSL 2 BASIC20.35■□□□□ 0.85
ZNF253O75346 ABHD17A-201ENST00000250974 1630 ntTSL 1 (best) BASIC20.35■□□□□ 0.85
ZNF253O75346 RTN2-202ENST00000344680 2063 ntAPPRIS P1 TSL 1 (best) BASIC20.34■□□□□ 0.85
ZNF253O75346 PGM5-201ENST00000396392 1782 ntTSL 1 (best) BASIC20.34■□□□□ 0.85
ZNF253O75346 PACS2-201ENST00000325438 3708 ntAPPRIS P1 TSL 1 (best) BASIC20.34■□□□□ 0.85
ZNF253O75346 ZCCHC2-201ENST00000269499 5959 ntAPPRIS P2 TSL 5 BASIC20.34■□□□□ 0.85
ZNF253O75346 ANKS1B-202ENST00000333732 1675 ntTSL 2 BASIC20.34■□□□□ 0.85
ZNF253O75346 PICK1-201ENST00000356976 2055 ntAPPRIS P1 TSL 1 (best) BASIC20.34■□□□□ 0.85
ZNF253O75346 EMC10-202ENST00000376918 2014 ntAPPRIS ALT2 TSL 1 (best) BASIC20.34■□□□□ 0.85
ZNF253O75346 MSX1-201ENST00000382723 1939 ntAPPRIS P1 TSL 1 (best) BASIC20.33■□□□□ 0.85
ZNF253O75346 FAM220A-206ENST00000616824 2211 ntTSL 1 (best) BASIC20.33■□□□□ 0.85
ZNF253O75346 DLG3-203ENST00000374360 5905 ntAPPRIS P2 TSL 1 (best) BASIC20.33■□□□□ 0.84
ZNF253O75346 CUL4A-202ENST00000375440 2364 ntAPPRIS P1 TSL 1 (best) BASIC20.32■□□□□ 0.84
ZNF253O75346 CHPT1-205ENST00000549872 2001 ntAPPRIS ALT2 TSL 5 BASIC20.32■□□□□ 0.84
ZNF253O75346 HES7-202ENST00000541682 1674 ntAPPRIS ALT1 TSL 1 (best) BASIC20.32■□□□□ 0.84
ZNF253O75346 RAB26-201ENST00000210187 1675 ntAPPRIS P1 TSL 1 (best) BASIC20.32■□□□□ 0.84
ZNF253O75346 C11orf80-204ENST00000525908 2135 ntAPPRIS P3 TSL 2 BASIC20.32■□□□□ 0.84
ZNF253O75346 CCNG2-201ENST00000316355 5526 ntAPPRIS P1 TSL 1 (best) BASIC20.31■□□□□ 0.84
ZNF253O75346 ST6GALNAC6-205ENST00000373146 2460 ntAPPRIS P3 TSL 1 (best) BASIC20.31■□□□□ 0.84
ZNF253O75346 ZNF276-202ENST00000443381 2267 ntAPPRIS P1 TSL 1 (best) BASIC20.31■□□□□ 0.84
ZNF253O75346 ZNF513-201ENST00000323703 2139 ntAPPRIS P1 TSL 1 (best) BASIC20.31■□□□□ 0.84
ZNF253O75346 AP002365.1-201ENST00000603448 772 ntBASIC20.31■□□□□ 0.84
ZNF253O75346 AGFG1-205ENST00000409979 2089 ntAPPRIS ALT1 TSL 5 BASIC20.3■□□□□ 0.84
ZNF253O75346 WDSUB1-205ENST00000409990 1920 ntAPPRIS P1 TSL 2 BASIC20.3■□□□□ 0.84
ZNF253O75346 PQLC1-211ENST00000590381 1247 ntTSL 2 BASIC20.3■□□□□ 0.84
ZNF253O75346 TSPAN11-203ENST00000545802 1649 ntTSL 1 (best) BASIC20.3■□□□□ 0.84
ZNF253O75346 RHOQ-201ENST00000238738 2975 ntAPPRIS P1 TSL 1 (best) BASIC20.3■□□□□ 0.84
ZNF253O75346 CCM2L-201ENST00000262659 2523 ntAPPRIS P1 TSL 1 (best) BASIC20.29■□□□□ 0.84
ZNF253O75346 FEV-201ENST00000295727 1879 ntAPPRIS P1 TSL 1 (best) BASIC20.29■□□□□ 0.84
ZNF253O75346 CHMP4B-201ENST00000217402 1646 ntAPPRIS P1 TSL 1 (best) BASIC20.29■□□□□ 0.84
ZNF253O75346 KCNQ5-204ENST00000370392 1469 ntTSL 1 (best) BASIC20.29■□□□□ 0.84
ZNF253O75346 ZNF787-203ENST00000610935 1925 ntAPPRIS P1 TSL 1 (best) BASIC20.28■□□□□ 0.84
ZNF253O75346 RUNDC3A-206ENST00000590941 1675 ntTSL 1 (best) BASIC20.28■□□□□ 0.84
ZNF253O75346 AFDN-201ENST00000344191 5249 ntTSL 5 BASIC20.28■□□□□ 0.84
ZNF253O75346 SP8-201ENST00000361443 1714 ntAPPRIS P3 TSL 1 (best) BASIC20.27■□□□□ 0.84
ZNF253O75346 TSPOAP1-AS1-203ENST00000579527 2042 ntTSL 2 BASIC20.27■□□□□ 0.84
ZNF253O75346 SIRT3-201ENST00000382743 2543 ntAPPRIS P2 TSL 1 (best) BASIC20.27■□□□□ 0.84
ZNF253O75346 H2AFV-202ENST00000308153 752 ntAPPRIS P4 TSL 1 (best) BASIC20.27■□□□□ 0.84
ZNF253O75346 MSX2-202ENST00000507785 1188 ntTSL 2 BASIC20.27■□□□□ 0.84
ZNF253O75346 GAL3ST1-205ENST00000406361 1819 ntAPPRIS P1 TSL 2 BASIC20.27■□□□□ 0.84
ZNF253O75346 SLC52A2-201ENST00000329994 1896 ntAPPRIS P1 TSL 1 (best) BASIC20.26■□□□□ 0.83
ZNF253O75346 PCSK6-216ENST00000615296 2921 ntTSL 5 BASIC20.26■□□□□ 0.83
ZNF253O75346 FAM58A-202ENST00000440428 1164 ntAPPRIS P2 TSL 2 BASIC20.26■□□□□ 0.83
ZNF253O75346 AVEN-201ENST00000306730 1605 ntAPPRIS P1 TSL 1 (best) BASIC20.26■□□□□ 0.83
ZNF253O75346 NPB-202ENST00000573081 2154 ntAPPRIS ALT2 BASIC20.25■□□□□ 0.83
ZNF253O75346 TMEM185A-207ENST00000600449 2840 ntAPPRIS P1 TSL 1 (best) BASIC20.25■□□□□ 0.83
ZNF253O75346 TGFBRAP1-202ENST00000393359 5979 ntAPPRIS P1 TSL 1 (best) BASIC20.25■□□□□ 0.83
ZNF253O75346 EFNA3-201ENST00000368408 1782 ntAPPRIS P1 TSL 1 (best) BASIC20.24■□□□□ 0.83
ZNF253O75346 MNX1-201ENST00000252971 2174 ntAPPRIS P3 TSL 1 (best) BASIC20.24■□□□□ 0.83
ZNF253O75346 NREP-202ENST00000379671 2581 ntAPPRIS P1 TSL 1 (best) BASIC20.24■□□□□ 0.83
ZNF253O75346 MAF-203ENST00000569649 1217 ntAPPRIS ALT2 TSL 5 BASIC20.24■□□□□ 0.83
ZNF253O75346 CERS2-205ENST00000368954 2505 ntAPPRIS P1 TSL 1 (best) BASIC20.24■□□□□ 0.83
ZNF253O75346 RTN4R-201ENST00000043402 2157 ntAPPRIS P2 TSL 1 (best) BASIC20.24■□□□□ 0.83
ZNF253O75346 HDAC3-201ENST00000305264 1959 ntAPPRIS P1 TSL 1 (best) BASIC20.23■□□□□ 0.83
ZNF253O75346 AL135925.1-201ENST00000605920 1701 ntBASIC20.23■□□□□ 0.83
ZNF253O75346 KIAA1456-206ENST00000528753 2392 ntTSL 2 BASIC20.23■□□□□ 0.83
ZNF253O75346 SHOX2-204ENST00000483851 1866 ntAPPRIS ALT2 TSL 2 BASIC20.22■□□□□ 0.83
ZNF253O75346 PDPK1-203ENST00000389224 2416 ntTSL 2 BASIC20.22■□□□□ 0.83
ZNF253O75346 JMJD8-216ENST00000609261 1901 ntAPPRIS ALT2 TSL 1 (best) BASIC20.21■□□□□ 0.83
ZNF253O75346 PLPPR3-201ENST00000359894 2387 ntAPPRIS P3 TSL 1 (best) BASIC20.21■□□□□ 0.83
ZNF253O75346 WSB2-201ENST00000315436 2646 ntAPPRIS P1 TSL 1 (best) BASIC20.21■□□□□ 0.83
ZNF253O75346 TCEA2-204ENST00000395053 1733 ntTSL 1 (best) BASIC20.21■□□□□ 0.83
ZNF253O75346 FOXE3-201ENST00000335071 1981 ntAPPRIS P1 BASIC20.21■□□□□ 0.83
ZNF253O75346 HNRNPAB-202ENST00000358344 1796 ntAPPRIS P4 TSL 1 (best) BASIC20.21■□□□□ 0.83
Retrieved 100 of 98,524 protein–RNA pairs in 139.1 ms